Wall clock time and date at job start Fri Apr 10 2020 14:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99334 * 2 1 4 4 C 1.53009 * 109.46770 * 180.02562 * 3 2 1 5 5 S 1.81397 * 109.47235 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54275 * 68.37271 * 5 4 3 7 7 O 1.42101 * 110.54298 * 291.62373 * 5 4 3 8 8 C 1.76193 * 104.44909 * 179.97438 * 5 4 3 9 9 C 1.38378 * 119.85027 * 269.72700 * 8 5 4 10 10 C 1.37933 * 120.15577 * 179.72606 * 9 8 5 11 11 C 1.39647 * 119.84243 * 0.56958 * 10 9 8 12 12 C 1.47724 * 120.15089 * 179.68600 * 11 10 9 13 13 O 1.21593 * 120.00487 * 180.02562 * 12 11 10 14 14 N 1.34785 * 119.99865 * 0.02562 * 12 11 10 15 15 C 1.36873 * 119.99762 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00288 * 359.97438 * 15 14 12 17 17 C 1.39051 * 119.99552 * 180.02562 * 15 14 12 18 18 N 1.31360 * 120.00288 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99706 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47097 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47343 * 119.99753 * 19 17 15 22 22 H 1.48497 * 109.46868 * 239.99810 * 19 17 15 23 23 C 1.39648 * 119.69891 * 359.70327 * 11 10 9 24 24 C 1.37929 * 119.84594 * 0.02562 * 23 11 10 25 25 H 1.08993 * 109.46853 * 299.99884 * 1 2 3 26 26 H 1.08997 * 109.47248 * 60.00446 * 1 2 3 27 27 H 1.09003 * 109.46551 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47373 * 60.00099 * 3 2 1 29 29 H 1.09000 * 109.47242 * 299.99623 * 3 2 1 30 30 H 1.09004 * 109.47149 * 59.99885 * 4 3 2 31 31 H 1.09000 * 109.46805 * 299.99737 * 4 3 2 32 32 H 1.08005 * 119.92019 * 0.02562 * 9 8 5 33 33 H 1.07997 * 120.07957 * 180.25475 * 10 9 8 34 34 H 0.96996 * 120.00264 * 359.97438 * 14 12 11 35 35 H 0.96994 * 120.00066 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.07300 * 179.97438 * 23 11 10 37 37 H 1.08001 * 119.92507 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 16 4.2732 2.8420 -0.0014 6 8 4.0285 3.4973 1.2355 7 8 4.0275 3.4966 -1.2385 8 6 6.0107 2.5497 -0.0013 9 6 6.6909 2.4416 1.1989 10 6 8.0502 2.2072 1.2063 11 6 8.7419 2.0908 -0.0012 12 6 10.1988 1.8467 -0.0012 13 8 10.7985 1.7463 -1.0542 14 7 10.8634 1.7353 1.1661 15 6 12.2134 1.5096 1.1661 16 1 12.7461 1.4204 0.2308 17 6 12.8989 1.3942 2.3704 18 7 12.2510 1.5021 3.5080 19 14 14.7415 1.0869 2.3704 20 1 15.2299 1.0061 0.9703 21 1 15.4291 2.2008 3.0716 22 1 15.0301 -0.1911 3.0694 23 6 8.0501 2.2066 -1.2088 24 6 6.6900 2.4354 -1.2015 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8568 0.6440 -0.8909 31 1 3.8574 0.6438 0.8892 32 1 6.1554 2.5362 2.1320 33 1 8.5791 2.1190 2.1437 34 1 10.3852 1.8158 2.0061 35 1 12.7293 1.4220 4.3480 36 1 8.5791 2.1180 -2.1462 37 1 6.1536 2.5248 -2.1346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126702195.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:29 Heat of formation + Delta-G solvation = -124.382382 kcal Electronic energy + Delta-G solvation = -22808.090855 eV Core-core repulsion = 19064.178229 eV Total energy + Delta-G solvation = -3743.912626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.43293 -38.37939 -37.53503 -37.23073 -36.07016 -34.31279 -32.33156 -31.92796 -30.94940 -30.67603 -26.96966 -25.72359 -24.04871 -23.25213 -22.45060 -19.89240 -19.05360 -18.51385 -17.92932 -17.11290 -16.83078 -16.51820 -16.02810 -15.79786 -15.25446 -15.08149 -14.70643 -14.50373 -14.00115 -13.83626 -13.83519 -13.54084 -13.33234 -12.72483 -12.46622 -12.38998 -12.23533 -12.16079 -12.08830 -11.84773 -11.80923 -11.31196 -11.17065 -11.05242 -10.70587 -10.52670 -10.46984 -10.19282 -9.84695 -9.03705 -8.88035 -8.68524 -8.30004 -6.79297 -4.06985 -0.16551 0.72172 1.52600 2.71048 2.96135 3.11017 3.16442 3.18119 3.39123 3.83938 3.91829 3.96305 4.21449 4.27464 4.40682 4.63995 4.71458 4.88548 4.90898 4.94659 5.01899 5.08384 5.10614 5.25813 5.32797 5.48629 5.57000 5.79094 5.85489 6.09113 6.24320 6.42063 6.59938 6.67185 7.00437 7.21512 7.74265 8.27367 8.83974 9.17662 9.76121 10.36379 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.026457 B = 0.002644 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.083430 B =10587.393263 C =10868.779908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.381 6.381 3 C 0.072 3.928 4 C -0.618 4.618 5 S 2.510 3.490 6 O -0.935 6.935 7 O -0.936 6.936 8 C -0.670 4.670 9 C -0.024 4.024 10 C -0.131 4.131 11 C -0.032 4.032 12 C 0.446 3.554 13 O -0.595 6.595 14 N -0.531 5.531 15 C -0.288 4.288 16 H 0.113 0.887 17 C 0.024 3.976 18 N -0.877 5.877 19 Si 0.939 3.061 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.103 4.103 24 C -0.029 4.029 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.395 0.605 35 H 0.280 0.720 36 H 0.141 0.859 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.074 -1.456 -2.561 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C -0.006 4.006 4 C -0.745 4.745 5 S 2.690 3.310 6 O -0.932 6.932 7 O -0.933 6.933 8 C -0.760 4.760 9 C -0.043 4.043 10 C -0.152 4.152 11 C -0.036 4.036 12 C 0.235 3.765 13 O -0.482 6.482 14 N -0.163 5.163 15 C -0.418 4.418 16 H 0.131 0.869 17 C -0.181 4.181 18 N -0.515 5.515 19 Si 0.764 3.236 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.124 4.124 24 C -0.049 4.049 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.231 0.769 35 H 0.090 0.910 36 H 0.159 0.841 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.857 -0.930 -3.009 20.105 hybrid contribution 1.008 -0.694 0.720 1.420 sum -18.849 -1.624 -2.289 19.057 Atomic orbital electron populations 1.22850 0.80410 1.03314 1.00488 1.87946 1.20153 1.26412 1.95495 1.22096 0.89828 0.86759 1.01906 1.30558 1.04904 1.25525 1.13531 1.04887 0.75020 0.76390 0.74701 1.93573 1.84737 1.70382 1.44544 1.93569 1.84735 1.70420 1.44573 1.30113 1.23842 1.22274 0.99805 1.20774 0.94707 0.92569 0.96281 1.21533 0.94400 1.01059 0.98209 1.20752 0.95142 0.93992 0.93729 1.17693 0.85850 0.87928 0.85025 1.90621 1.68520 1.58282 1.30802 1.42040 1.08990 1.58161 1.07140 1.20032 0.82780 1.43920 0.95038 0.86922 1.25511 1.01726 0.96466 0.94423 1.69586 1.37795 1.46106 0.98050 0.85645 0.80609 0.78186 0.79119 1.18746 1.20248 1.20264 1.21318 0.93449 0.99070 0.98547 1.20797 0.94742 0.93128 0.96200 0.93575 0.93584 0.89133 0.91468 0.91501 0.83714 0.83673 0.84168 0.84589 0.76938 0.91000 0.84075 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.60 10.70 -35.23 -0.38 -3.97 16 3 C 0.07 0.60 5.95 37.16 0.22 0.82 16 4 C -0.62 -5.04 6.35 37.16 0.24 -4.81 16 5 S 2.51 27.67 5.16 -107.50 -0.55 27.12 16 6 O -0.94 -12.58 17.10 -57.54 -0.98 -13.56 16 7 O -0.94 -12.48 17.11 -57.54 -0.98 -13.47 16 8 C -0.67 -8.99 5.67 -39.48 -0.22 -9.21 16 9 C -0.02 -0.34 9.45 -39.64 -0.37 -0.72 16 10 C -0.13 -2.20 9.54 -39.17 -0.37 -2.57 16 11 C -0.03 -0.62 5.87 -104.97 -0.62 -1.23 16 12 C 0.45 10.71 7.72 -12.38 -0.10 10.62 16 13 O -0.59 -16.18 15.92 5.28 0.08 -16.09 16 14 N -0.53 -13.09 5.23 -11.87 -0.06 -13.16 16 15 C -0.29 -7.63 9.68 -15.00 -0.15 -7.77 16 16 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 17 C 0.02 0.60 5.50 -17.45 -0.10 0.50 16 18 N -0.88 -22.18 13.05 55.50 0.72 -21.46 16 19 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 C -0.10 -1.77 9.60 -39.17 -0.38 -2.15 16 24 C -0.03 -0.42 9.45 -39.64 -0.37 -0.79 16 25 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.14 1.00 8.14 -51.92 -0.42 0.58 16 31 H 0.15 1.02 8.14 -51.92 -0.42 0.59 16 32 H 0.14 1.63 7.55 -52.48 -0.40 1.24 16 33 H 0.14 2.18 6.41 -52.49 -0.34 1.84 16 34 H 0.40 9.14 5.93 -40.82 -0.24 8.90 16 35 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.14 2.41 7.65 -52.49 -0.40 2.01 16 37 H 0.14 1.60 7.56 -52.49 -0.40 1.20 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -34.16 338.47 -7.43 -41.59 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.24 Total: 9.40 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.11 Total: -16.05 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.66 Total: -34.62 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -2.26 Total: -47.09 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 27.67 SS G_CDS: -0.55 Total: 27.12 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.16 -7.43 -41.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126702195.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.797 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds