Wall clock time and date at job start Fri Apr 10 2020 14:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99334 * 2 1 4 4 C 1.53009 * 109.46770 * 180.02562 * 3 2 1 5 5 S 1.81397 * 109.47235 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54275 * 68.37271 * 5 4 3 7 7 O 1.42101 * 110.54298 * 291.62373 * 5 4 3 8 8 C 1.76193 * 104.44909 * 179.97438 * 5 4 3 9 9 C 1.38378 * 119.85027 * 269.72700 * 8 5 4 10 10 C 1.37933 * 120.15577 * 179.72606 * 9 8 5 11 11 C 1.39647 * 119.84243 * 0.56958 * 10 9 8 12 12 C 1.47724 * 120.15089 * 179.68600 * 11 10 9 13 13 O 1.21593 * 120.00487 * 180.02562 * 12 11 10 14 14 N 1.34785 * 119.99865 * 0.02562 * 12 11 10 15 15 C 1.36873 * 119.99762 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00288 * 359.97438 * 15 14 12 17 17 C 1.39051 * 119.99552 * 180.02562 * 15 14 12 18 18 N 1.31360 * 120.00288 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99706 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47097 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47343 * 119.99753 * 19 17 15 22 22 H 1.48497 * 109.46868 * 239.99810 * 19 17 15 23 23 C 1.39648 * 119.69891 * 359.70327 * 11 10 9 24 24 C 1.37929 * 119.84594 * 0.02562 * 23 11 10 25 25 H 1.08993 * 109.46853 * 299.99884 * 1 2 3 26 26 H 1.08997 * 109.47248 * 60.00446 * 1 2 3 27 27 H 1.09003 * 109.46551 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47373 * 60.00099 * 3 2 1 29 29 H 1.09000 * 109.47242 * 299.99623 * 3 2 1 30 30 H 1.09004 * 109.47149 * 59.99885 * 4 3 2 31 31 H 1.09000 * 109.46805 * 299.99737 * 4 3 2 32 32 H 1.08005 * 119.92019 * 0.02562 * 9 8 5 33 33 H 1.07997 * 120.07957 * 180.25475 * 10 9 8 34 34 H 0.96996 * 120.00264 * 359.97438 * 14 12 11 35 35 H 0.96994 * 120.00066 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.07300 * 179.97438 * 23 11 10 37 37 H 1.08001 * 119.92507 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 16 4.2732 2.8420 -0.0014 6 8 4.0285 3.4973 1.2355 7 8 4.0275 3.4966 -1.2385 8 6 6.0107 2.5497 -0.0013 9 6 6.6909 2.4416 1.1989 10 6 8.0502 2.2072 1.2063 11 6 8.7419 2.0908 -0.0012 12 6 10.1988 1.8467 -0.0012 13 8 10.7985 1.7463 -1.0542 14 7 10.8634 1.7353 1.1661 15 6 12.2134 1.5096 1.1661 16 1 12.7461 1.4204 0.2308 17 6 12.8989 1.3942 2.3704 18 7 12.2510 1.5021 3.5080 19 14 14.7415 1.0869 2.3704 20 1 15.2299 1.0061 0.9703 21 1 15.4291 2.2008 3.0716 22 1 15.0301 -0.1911 3.0694 23 6 8.0501 2.2066 -1.2088 24 6 6.6900 2.4354 -1.2015 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8568 0.6440 -0.8909 31 1 3.8574 0.6438 0.8892 32 1 6.1554 2.5362 2.1320 33 1 8.5791 2.1190 2.1437 34 1 10.3852 1.8158 2.0061 35 1 12.7293 1.4220 4.3480 36 1 8.5791 2.1180 -2.1462 37 1 6.1536 2.5248 -2.1346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126702195.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:28 Heat of formation + Delta-G solvation = -150.858278 kcal Electronic energy + Delta-G solvation = -22809.238936 eV Core-core repulsion = 19064.178229 eV Total energy + Delta-G solvation = -3745.060707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00023 -39.17596 -38.94937 -38.23153 -37.07183 -36.24056 -33.72121 -32.96428 -32.36981 -32.04372 -27.55109 -27.40384 -25.21787 -24.22998 -23.74630 -21.53954 -20.34496 -20.02688 -19.06463 -18.31607 -17.72416 -17.47162 -17.01245 -16.74573 -16.65033 -16.13501 -15.88429 -15.82295 -15.67173 -15.44954 -15.06384 -14.57944 -14.54030 -13.95581 -13.86974 -13.61451 -13.22739 -13.18110 -13.11913 -13.00542 -12.67898 -12.62271 -12.43621 -12.22444 -12.14129 -12.05698 -11.75486 -11.68630 -10.72664 -10.64085 -10.44509 -10.19913 -10.13760 -8.65907 -6.09345 -1.09160 -0.57523 0.24566 1.32688 1.39565 1.54148 1.72451 1.82008 2.20594 2.49579 2.70584 2.93128 3.07323 3.09759 3.18309 3.58674 3.66293 3.81379 3.85502 4.03528 4.19440 4.25012 4.33776 4.49628 4.50433 4.55129 4.60600 4.76166 4.87374 4.88953 4.94831 5.02523 5.26285 5.30341 5.70707 5.82816 6.07800 6.37965 6.91749 7.29524 7.86967 8.50872 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.026457 B = 0.002644 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.083430 B =10587.393263 C =10868.779908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.403 6.403 3 C 0.057 3.943 4 C -0.599 4.599 5 S 2.535 3.465 6 O -0.956 6.956 7 O -0.955 6.955 8 C -0.657 4.657 9 C -0.023 4.023 10 C -0.130 4.130 11 C -0.065 4.065 12 C 0.447 3.553 13 O -0.634 6.634 14 N -0.541 5.541 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.006 4.006 18 N -0.902 5.902 19 Si 1.002 2.998 20 H -0.271 1.271 21 H -0.267 1.267 22 H -0.265 1.265 23 C -0.109 4.109 24 C -0.023 4.023 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.138 0.862 34 H 0.400 0.600 35 H 0.286 0.714 36 H 0.135 0.865 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.963 -1.695 -2.236 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.323 6.323 3 C -0.021 4.021 4 C -0.730 4.730 5 S 2.715 3.285 6 O -0.953 6.953 7 O -0.953 6.953 8 C -0.744 4.744 9 C -0.041 4.041 10 C -0.150 4.150 11 C -0.068 4.068 12 C 0.237 3.763 13 O -0.524 6.524 14 N -0.175 5.175 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.209 4.209 18 N -0.541 5.541 19 Si 0.824 3.176 20 H -0.195 1.195 21 H -0.192 1.192 22 H -0.190 1.190 23 C -0.130 4.130 24 C -0.042 4.042 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.181 0.819 31 H 0.181 0.819 32 H 0.190 0.810 33 H 0.155 0.845 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.153 0.847 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -22.738 -1.132 -2.667 22.922 hybrid contribution 1.473 -0.597 0.501 1.667 sum -21.265 -1.730 -2.165 21.444 Atomic orbital electron populations 1.23072 0.78948 1.04392 1.01537 1.87895 1.21839 1.26856 1.95718 1.22317 0.89540 0.86920 1.03335 1.30324 1.04984 1.22127 1.15518 1.04321 0.73369 0.77209 0.73562 1.93551 1.84279 1.72120 1.45355 1.93548 1.84265 1.72132 1.45330 1.30755 1.25983 1.18504 0.99144 1.21135 0.93566 0.91334 0.98082 1.21608 0.95602 1.00561 0.97210 1.20488 0.92611 0.97809 0.95918 1.18473 0.87805 0.85855 0.84179 1.90564 1.70237 1.59420 1.32187 1.41979 1.08661 1.59375 1.07466 1.19903 0.83905 1.47969 0.94804 0.89503 1.26259 1.05601 0.95400 0.93636 1.69627 1.39228 1.46821 0.98411 0.84747 0.75553 0.78656 0.78657 1.19546 1.19151 1.19021 1.21413 0.94865 0.99185 0.97517 1.21135 0.93391 0.91614 0.98062 0.92574 0.92525 0.88175 0.90257 0.90215 0.81869 0.81910 0.81044 0.84475 0.76394 0.90387 0.84724 0.80993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -6.26 10.70 -148.98 -1.59 -7.85 16 3 C 0.06 0.72 5.95 71.99 0.43 1.15 16 4 C -0.60 -7.14 6.35 71.99 0.46 -6.68 16 5 S 2.54 46.46 5.16 -56.49 -0.29 46.17 16 6 O -0.96 -22.37 17.10 -127.65 -2.18 -24.55 16 7 O -0.96 -22.15 17.11 -127.65 -2.18 -24.33 16 8 C -0.66 -15.59 5.67 22.34 0.13 -15.47 16 9 C -0.02 -0.58 9.45 22.23 0.21 -0.37 16 10 C -0.13 -4.27 9.54 22.54 0.22 -4.05 16 11 C -0.06 -2.56 5.87 -20.09 -0.12 -2.68 16 12 C 0.45 22.61 7.72 86.75 0.67 23.28 16 13 O -0.63 -36.52 15.92 -4.01 -0.06 -36.59 16 14 N -0.54 -28.18 5.23 -309.72 -1.62 -29.80 16 15 C -0.34 -18.85 9.68 84.10 0.81 -18.03 16 16 H 0.09 5.17 7.15 -2.91 -0.02 5.15 16 17 C -0.01 -0.33 5.50 84.96 0.47 0.14 16 18 N -0.90 -46.58 13.05 21.68 0.28 -46.29 16 19 Si 1.00 41.04 29.55 68.60 2.03 43.07 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 22 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 23 C -0.11 -3.73 9.60 22.54 0.22 -3.51 16 24 C -0.02 -0.61 9.45 22.23 0.21 -0.40 16 25 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.17 3.37 7.55 -2.91 -0.02 3.35 16 33 H 0.14 4.42 6.41 -2.91 -0.02 4.41 16 34 H 0.40 19.41 5.93 -92.71 -0.55 18.86 16 35 H 0.29 13.59 8.31 -92.71 -0.77 12.82 16 36 H 0.13 4.69 7.65 -2.91 -0.02 4.67 16 37 H 0.17 3.33 7.56 -2.91 -0.02 3.31 16 Total: -1.00 -76.67 338.47 -0.12 -76.79 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.56 Total: 28.62 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 4.94 Total: -25.23 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.34 Total: -76.09 kcal Atomic # 8 Polarization: -87.30 SS G_CDS: -6.03 Total: -93.32 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 46.46 SS G_CDS: -0.29 Total: 46.17 kcal Total: -76.67 -0.12 -76.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126702195.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.069 kcal (2) G-P(sol) polarization free energy of solvation -76.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds