Wall clock time and date at job start Fri Apr 10 2020 14:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00469 * 2 1 4 4 C 1.53005 * 109.47679 * 179.97438 * 3 2 1 5 5 S 1.81394 * 109.47630 * 179.97438 * 4 3 2 6 6 O 1.42102 * 110.54033 * 68.37450 * 5 4 3 7 7 O 1.42098 * 110.54366 * 291.63052 * 5 4 3 8 8 N 1.65596 * 104.45028 * 180.02562 * 5 4 3 9 9 C 1.34780 * 119.99818 * 65.00189 * 8 5 4 10 10 O 1.21544 * 119.99932 * 359.97438 * 9 8 5 11 11 C 1.47887 * 119.99821 * 179.97438 * 9 8 5 12 12 C 1.39922 * 120.02762 * 359.97438 * 11 9 8 13 13 C 1.38324 * 120.35956 * 180.02562 * 12 11 9 14 14 C 1.37743 * 120.41166 * 359.97438 * 13 12 11 15 15 C 1.40753 * 120.04404 * 0.02562 * 14 13 12 16 16 C 1.41428 * 120.18094 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00377 * 24.37846 * 16 15 14 18 18 C 1.39938 * 120.00012 * 204.38668 * 16 15 14 19 19 N 1.30825 * 119.99869 * 17.84278 * 18 16 15 20 20 Si 1.86804 * 120.00158 * 197.84304 * 18 16 15 21 21 H 1.48505 * 109.46701 * 94.69079 * 20 18 16 22 22 H 1.48499 * 109.47242 * 214.69090 * 20 18 16 23 23 H 1.48500 * 109.47130 * 334.69434 * 20 18 16 24 24 C 1.38993 * 120.02489 * 179.97438 * 11 9 8 25 25 H 1.08996 * 109.47374 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46650 * 300.00093 * 1 2 3 27 27 H 1.09001 * 109.47238 * 59.99381 * 1 2 3 28 28 H 1.09006 * 109.47291 * 59.99982 * 3 2 1 29 29 H 1.09000 * 109.47463 * 300.00185 * 3 2 1 30 30 H 1.09006 * 109.46677 * 59.99725 * 4 3 2 31 31 H 1.09000 * 109.46921 * 300.00636 * 4 3 2 32 32 H 0.97004 * 120.00042 * 245.00073 * 8 5 4 33 33 H 1.08009 * 119.81952 * 0.02562 * 12 11 9 34 34 H 1.08004 * 119.79125 * 180.02562 * 13 12 11 35 35 H 1.08004 * 119.98157 * 179.97438 * 14 13 12 36 36 H 0.97002 * 120.00058 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.19965 * 359.70686 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2735 2.8416 -0.0001 6 8 4.0278 3.4974 1.2364 7 8 4.0287 3.4959 -1.2375 8 7 5.9065 2.5668 -0.0001 9 6 6.4891 1.9680 -1.0577 10 8 5.8158 1.6294 -2.0113 11 6 7.9475 1.7231 -1.0579 12 6 8.7232 2.1132 0.0394 13 6 10.0879 1.8879 0.0462 14 6 10.6991 1.2767 -1.0262 15 6 9.9354 0.8773 -2.1390 16 6 10.5599 0.2491 -3.2415 17 1 11.4938 -0.2760 -3.1060 18 6 9.9677 0.3080 -4.5081 19 7 9.0519 1.2075 -4.7608 20 14 10.4850 -0.8975 -5.8380 21 1 9.5582 -2.0579 -5.8418 22 1 10.4405 -0.2242 -7.1609 23 1 11.8672 -1.3688 -5.5685 24 6 8.5488 1.1052 -2.1481 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.8575 0.6434 -0.8892 31 1 3.8568 0.6437 0.8908 32 1 6.4437 2.8367 0.7612 33 1 8.2537 2.5928 0.8856 34 1 10.6778 2.1924 0.8982 35 1 11.7653 1.1046 -1.0137 36 1 8.6417 1.2486 -5.6388 37 1 7.9533 0.7982 -2.9952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171801363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:31 Heat of formation + Delta-G solvation = -135.759635 kcal Electronic energy + Delta-G solvation = -23504.000057 eV Core-core repulsion = 19759.594077 eV Total energy + Delta-G solvation = -3744.405980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74299 -38.24597 -37.39149 -37.04243 -36.09087 -34.33158 -33.68273 -32.18764 -30.26981 -29.60718 -26.84544 -25.49468 -23.93697 -23.37923 -21.17288 -20.36924 -19.48493 -18.32199 -17.90681 -17.00642 -16.70757 -16.26672 -16.08723 -15.53750 -15.19459 -15.13614 -14.78783 -14.54418 -14.34041 -13.82017 -13.45017 -13.04224 -12.70912 -12.53427 -12.48854 -12.22625 -12.08689 -11.99052 -11.80020 -11.71214 -11.30318 -11.20468 -11.12488 -10.86176 -10.61722 -10.47777 -10.32832 -10.05465 -9.84360 -9.50283 -9.33154 -7.85272 -7.67461 -6.91519 -4.53251 -0.02788 1.78714 2.40488 2.68598 3.02278 3.05463 3.06290 3.22007 3.44747 3.78045 3.84044 4.10631 4.32917 4.47475 4.54047 4.83294 4.93594 5.02598 5.04841 5.24384 5.35340 5.36805 5.44374 5.55383 5.91923 6.12224 6.52908 6.72610 6.74360 6.85097 6.97647 7.08273 7.20379 7.53771 7.61566 7.80992 7.98996 8.11834 8.35471 8.67500 8.69220 10.03256 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.003732 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.515858 B = 7500.697797 C = 8582.753900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.380 6.380 3 C 0.078 3.922 4 C -0.631 4.631 5 S 2.606 3.394 6 O -0.951 6.951 7 O -0.925 6.925 8 N -1.051 6.051 9 C 0.584 3.416 10 O -0.502 6.502 11 C -0.135 4.135 12 C -0.217 4.217 13 C -0.094 4.094 14 C -0.206 4.206 15 C 0.097 3.903 16 C -0.456 4.456 17 H 0.084 0.916 18 C 0.072 3.928 19 N -0.780 5.780 20 Si 0.913 3.087 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.085 4.085 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.433 0.567 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.287 0.713 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.630 -0.814 8.575 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.298 6.298 3 C -0.001 4.001 4 C -0.759 4.759 5 S 2.699 3.301 6 O -0.941 6.941 7 O -0.915 6.915 8 N -0.818 5.818 9 C 0.376 3.624 10 O -0.376 6.376 11 C -0.140 4.140 12 C -0.238 4.238 13 C -0.112 4.112 14 C -0.226 4.226 15 C 0.094 3.906 16 C -0.484 4.484 17 H 0.102 0.898 18 C -0.148 4.148 19 N -0.404 5.404 20 Si 0.737 3.263 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.105 4.105 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.172 0.828 31 H 0.160 0.840 32 H 0.271 0.729 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.573 -0.298 7.650 13.876 hybrid contribution 0.405 -0.750 -0.147 0.865 sum -11.169 -1.048 7.502 13.495 Atomic orbital electron populations 1.22843 0.80518 1.03264 1.00418 1.87952 1.20054 1.26356 1.95465 1.22017 0.89573 0.86769 1.01710 1.30709 1.05429 1.25885 1.13906 1.05272 0.73761 0.76541 0.74563 1.93629 1.83716 1.71457 1.45300 1.93666 1.83140 1.70310 1.44344 1.54930 1.29145 1.69261 1.28452 1.18903 0.90299 0.73736 0.79434 1.90862 1.65105 1.49127 1.32523 1.19288 0.89124 1.07376 0.98237 1.20341 0.94473 1.10930 0.98015 1.20451 0.93883 0.99444 0.97471 1.21150 0.98185 1.06531 0.96752 1.17602 0.90966 0.89740 0.92270 1.19638 1.07419 1.29514 0.91860 0.89824 1.26001 0.93810 0.94704 1.00250 1.69770 1.20262 1.26658 1.23731 0.86218 0.80195 0.80718 0.79199 1.19128 1.20097 1.18464 1.21704 0.94990 0.97816 0.95965 0.89148 0.93691 0.93561 0.91702 0.91398 0.82752 0.83974 0.72860 0.88854 0.88517 0.88330 0.90168 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.59 10.70 -35.23 -0.38 -4.97 16 3 C 0.08 0.88 5.95 37.16 0.22 1.10 16 4 C -0.63 -7.74 6.25 37.16 0.23 -7.51 16 5 S 2.61 37.49 5.11 -107.50 -0.55 36.94 16 6 O -0.95 -14.06 18.08 -57.54 -1.04 -15.10 16 7 O -0.92 -17.05 17.03 -64.79 -1.10 -18.16 16 8 N -1.05 -16.07 5.55 30.54 0.17 -15.90 16 9 C 0.58 11.63 7.51 -12.31 -0.09 11.54 16 10 O -0.50 -11.22 14.43 -11.81 -0.17 -11.39 16 11 C -0.13 -2.96 5.87 -105.04 -0.62 -3.57 16 12 C -0.22 -4.23 9.55 -38.92 -0.37 -4.60 16 13 C -0.09 -1.87 10.01 -39.73 -0.40 -2.27 16 14 C -0.21 -4.60 9.78 -38.81 -0.38 -4.98 16 15 C 0.10 2.42 5.57 -106.87 -0.60 1.82 16 16 C -0.46 -11.37 9.05 -37.73 -0.34 -11.71 16 17 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 18 C 0.07 1.74 5.14 -17.34 -0.09 1.65 16 19 N -0.78 -19.83 10.96 55.55 0.61 -19.23 16 20 Si 0.91 18.02 29.60 -169.99 -5.03 12.99 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 C -0.08 -2.11 8.23 -38.44 -0.32 -2.43 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.15 2.12 7.19 -51.92 -0.37 1.74 16 31 H 0.14 1.41 8.14 -51.92 -0.42 0.99 16 32 H 0.43 5.38 6.81 -34.47 -0.23 5.14 16 33 H 0.09 1.44 6.38 -52.48 -0.33 1.11 16 34 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 36 H 0.29 6.71 8.30 -40.82 -0.34 6.38 16 37 H 0.14 3.67 5.75 -52.49 -0.30 3.36 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -32.06 333.99 -8.27 -40.33 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.18 Total: 9.07 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -1.63 Total: -19.62 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.78 Total: -35.13 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -2.69 Total: -49.61 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: 37.49 SS G_CDS: -0.55 Total: 36.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.06 -8.27 -40.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171801363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.427 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds