Wall clock time and date at job start Fri Apr 10 2020 14:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00469 * 2 1 4 4 C 1.53005 * 109.47679 * 179.97438 * 3 2 1 5 5 S 1.81394 * 109.47630 * 179.97438 * 4 3 2 6 6 O 1.42102 * 110.54033 * 68.37450 * 5 4 3 7 7 O 1.42098 * 110.54366 * 291.63052 * 5 4 3 8 8 N 1.65596 * 104.45028 * 180.02562 * 5 4 3 9 9 C 1.34780 * 119.99818 * 65.00189 * 8 5 4 10 10 O 1.21544 * 119.99932 * 359.97438 * 9 8 5 11 11 C 1.47887 * 119.99821 * 179.97438 * 9 8 5 12 12 C 1.39922 * 120.02762 * 359.97438 * 11 9 8 13 13 C 1.38324 * 120.35956 * 180.02562 * 12 11 9 14 14 C 1.37743 * 120.41166 * 359.97438 * 13 12 11 15 15 C 1.40753 * 120.04404 * 0.02562 * 14 13 12 16 16 C 1.41428 * 120.18094 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00377 * 24.37846 * 16 15 14 18 18 C 1.39938 * 120.00012 * 204.38668 * 16 15 14 19 19 N 1.30825 * 119.99869 * 17.84278 * 18 16 15 20 20 Si 1.86804 * 120.00158 * 197.84304 * 18 16 15 21 21 H 1.48505 * 109.46701 * 94.69079 * 20 18 16 22 22 H 1.48499 * 109.47242 * 214.69090 * 20 18 16 23 23 H 1.48500 * 109.47130 * 334.69434 * 20 18 16 24 24 C 1.38993 * 120.02489 * 179.97438 * 11 9 8 25 25 H 1.08996 * 109.47374 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46650 * 300.00093 * 1 2 3 27 27 H 1.09001 * 109.47238 * 59.99381 * 1 2 3 28 28 H 1.09006 * 109.47291 * 59.99982 * 3 2 1 29 29 H 1.09000 * 109.47463 * 300.00185 * 3 2 1 30 30 H 1.09006 * 109.46677 * 59.99725 * 4 3 2 31 31 H 1.09000 * 109.46921 * 300.00636 * 4 3 2 32 32 H 0.97004 * 120.00042 * 245.00073 * 8 5 4 33 33 H 1.08009 * 119.81952 * 0.02562 * 12 11 9 34 34 H 1.08004 * 119.79125 * 180.02562 * 13 12 11 35 35 H 1.08004 * 119.98157 * 179.97438 * 14 13 12 36 36 H 0.97002 * 120.00058 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.19965 * 359.70686 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2735 2.8416 -0.0001 6 8 4.0278 3.4974 1.2364 7 8 4.0287 3.4959 -1.2375 8 7 5.9065 2.5668 -0.0001 9 6 6.4891 1.9680 -1.0577 10 8 5.8158 1.6294 -2.0113 11 6 7.9475 1.7231 -1.0579 12 6 8.7232 2.1132 0.0394 13 6 10.0879 1.8879 0.0462 14 6 10.6991 1.2767 -1.0262 15 6 9.9354 0.8773 -2.1390 16 6 10.5599 0.2491 -3.2415 17 1 11.4938 -0.2760 -3.1060 18 6 9.9677 0.3080 -4.5081 19 7 9.0519 1.2075 -4.7608 20 14 10.4850 -0.8975 -5.8380 21 1 9.5582 -2.0579 -5.8418 22 1 10.4405 -0.2242 -7.1609 23 1 11.8672 -1.3688 -5.5685 24 6 8.5488 1.1052 -2.1481 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.8575 0.6434 -0.8892 31 1 3.8568 0.6437 0.8908 32 1 6.4437 2.8367 0.7612 33 1 8.2537 2.5928 0.8856 34 1 10.6778 2.1924 0.8982 35 1 11.7653 1.1046 -1.0137 36 1 8.6417 1.2486 -5.6388 37 1 7.9533 0.7982 -2.9952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171801363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:31 Heat of formation + Delta-G solvation = -159.554880 kcal Electronic energy + Delta-G solvation = -23505.031897 eV Core-core repulsion = 19759.594077 eV Total energy + Delta-G solvation = -3745.437820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33007 -39.06203 -39.00442 -38.38650 -37.37659 -35.90582 -35.33366 -33.11312 -31.98871 -31.32417 -27.53203 -27.27421 -25.32538 -24.50993 -22.88307 -21.93909 -20.78206 -19.84723 -19.24352 -18.22408 -17.94141 -17.45357 -17.15184 -17.04594 -16.57916 -16.32701 -16.09648 -16.03055 -15.86714 -15.16288 -14.70509 -14.66525 -14.33769 -13.87063 -13.52196 -13.51423 -13.36603 -13.31498 -12.98587 -12.82868 -12.82431 -12.61394 -12.52399 -12.24688 -12.20787 -12.04292 -11.80638 -11.53065 -11.15398 -11.09405 -10.82408 -9.58586 -9.42085 -8.67971 -6.38809 -1.20501 0.11398 0.98675 1.15030 1.38604 1.46188 1.52718 1.73523 2.19343 2.28662 2.72523 2.83572 2.94363 3.37545 3.47711 3.63430 3.66050 3.94219 4.03191 4.30223 4.40425 4.42912 4.51689 4.56448 4.60633 4.81248 4.86450 5.05265 5.13640 5.28588 5.46750 5.58170 5.82783 5.91842 5.98934 6.03996 6.26547 6.51122 6.57137 6.87374 6.91288 8.28879 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.003732 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.515858 B = 7500.697797 C = 8582.753900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.404 6.404 3 C 0.066 3.934 4 C -0.618 4.618 5 S 2.622 3.378 6 O -0.949 6.949 7 O -0.968 6.968 8 N -1.035 6.035 9 C 0.590 3.410 10 O -0.533 6.533 11 C -0.147 4.147 12 C -0.195 4.195 13 C -0.095 4.095 14 C -0.209 4.209 15 C 0.065 3.935 16 C -0.493 4.493 17 H 0.085 0.915 18 C 0.031 3.969 19 N -0.824 5.824 20 Si 0.982 3.018 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.251 1.251 24 C -0.123 4.123 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.170 0.830 32 H 0.447 0.553 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.288 0.712 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 -0.717 11.179 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.324 6.324 3 C -0.013 4.013 4 C -0.749 4.749 5 S 2.717 3.283 6 O -0.939 6.939 7 O -0.958 6.958 8 N -0.802 5.802 9 C 0.381 3.619 10 O -0.409 6.409 11 C -0.152 4.152 12 C -0.214 4.214 13 C -0.113 4.113 14 C -0.229 4.229 15 C 0.063 3.937 16 C -0.523 4.523 17 H 0.103 0.897 18 C -0.184 4.184 19 N -0.449 5.449 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.174 1.174 24 C -0.143 4.143 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.157 0.843 31 H 0.188 0.812 32 H 0.288 0.712 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.883 -0.160 10.304 15.729 hybrid contribution 0.410 -0.714 -0.686 1.071 sum -11.473 -0.873 9.618 14.997 Atomic orbital electron populations 1.23107 0.78646 1.04593 1.01647 1.87902 1.22174 1.26587 1.95710 1.22212 0.88658 0.87133 1.03248 1.30531 1.06449 1.23326 1.14594 1.04740 0.73010 0.77043 0.73467 1.93627 1.83316 1.72214 1.44754 1.93620 1.83467 1.72394 1.46352 1.54660 1.29898 1.68074 1.27608 1.18637 0.89618 0.73678 0.79919 1.90853 1.65583 1.50415 1.34023 1.19576 0.90620 1.06766 0.98210 1.20942 0.94438 1.08066 0.98002 1.20949 0.94455 0.97968 0.97885 1.21471 0.98860 1.05933 0.96637 1.17941 0.91423 0.90804 0.93534 1.19881 1.08233 1.31291 0.92851 0.89676 1.26821 0.93551 0.95828 1.02219 1.69866 1.22145 1.28659 1.24267 0.85192 0.80021 0.78196 0.76361 1.19097 1.19599 1.17438 1.21525 0.95190 1.00848 0.96772 0.87888 0.91898 0.92915 0.89066 0.91176 0.84271 0.81198 0.71179 0.83874 0.84044 0.87173 0.90169 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -9.09 10.70 -148.98 -1.59 -10.69 16 3 C 0.07 1.37 5.95 71.98 0.43 1.80 16 4 C -0.62 -14.16 6.25 71.98 0.45 -13.71 16 5 S 2.62 71.33 5.11 -56.49 -0.29 71.05 16 6 O -0.95 -25.46 18.08 -127.65 -2.31 -27.77 16 7 O -0.97 -35.60 17.03 -120.71 -2.06 -37.65 16 8 N -1.04 -29.62 5.55 -175.57 -0.98 -30.60 16 9 C 0.59 23.30 7.51 86.80 0.65 23.95 16 10 O -0.53 -24.52 14.43 12.53 0.18 -24.34 16 11 C -0.15 -6.37 5.87 -20.13 -0.12 -6.48 16 12 C -0.19 -6.93 9.55 22.70 0.22 -6.72 16 13 C -0.09 -3.44 10.01 22.17 0.22 -3.22 16 14 C -0.21 -9.14 9.78 22.77 0.22 -8.92 16 15 C 0.07 3.36 5.57 -21.32 -0.12 3.24 16 16 C -0.49 -25.68 9.05 23.47 0.21 -25.46 16 17 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 18 C 0.03 1.57 5.14 85.25 0.44 2.00 16 19 N -0.82 -44.43 10.96 21.82 0.24 -44.19 16 20 Si 0.98 38.34 29.60 68.60 2.03 40.37 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 22 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 24 C -0.12 -6.38 8.23 23.01 0.19 -6.20 16 25 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.14 3.78 7.19 -2.39 -0.02 3.77 16 31 H 0.17 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.45 9.51 6.81 -96.74 -0.66 8.85 16 33 H 0.14 3.61 6.38 -2.91 -0.02 3.59 16 34 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.29 14.34 8.30 -92.71 -0.77 13.58 16 37 H 0.11 6.08 5.75 -2.91 -0.02 6.06 16 Total: -1.00 -73.01 333.99 -0.28 -73.28 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.45 Total: 28.77 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 4.04 Total: -38.23 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -0.74 Total: -74.79 kcal Atomic # 8 Polarization: -94.67 SS G_CDS: -5.78 Total: -100.45 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Atomic # 16 Polarization: 71.33 SS G_CDS: -0.29 Total: 71.05 kcal Total: -73.01 -0.28 -73.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171801363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.274 kcal (2) G-P(sol) polarization free energy of solvation -73.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds