Wall clock time and date at job start Fri Apr 10 2020 14:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34712 * 117.00064 * 2 1 4 4 O 1.21462 * 120.00409 * 359.97438 * 3 2 1 5 5 C 1.47729 * 119.99784 * 179.97438 * 3 2 1 6 6 C 1.39628 * 120.14894 * 179.97438 * 5 3 2 7 7 C 1.37944 * 119.84752 * 180.29500 * 6 5 3 8 8 C 1.38367 * 120.14747 * 359.44897 * 7 6 5 9 9 C 1.50709 * 119.84783 * 180.27613 * 8 7 6 10 10 S 1.81392 * 109.47076 * 270.27584 * 9 8 7 11 11 O 1.42098 * 110.54468 * 291.62347 * 10 9 8 12 12 O 1.42101 * 110.54324 * 68.37825 * 10 9 8 13 13 N 1.65598 * 104.45035 * 179.97438 * 10 9 8 14 14 C 1.46502 * 120.00205 * 270.00664 * 13 10 9 15 15 C 1.36943 * 119.99970 * 90.00062 * 13 10 9 16 16 H 1.07995 * 119.99917 * 22.32948 * 15 13 10 17 17 C 1.38810 * 119.99695 * 202.32960 * 15 13 10 18 18 N 1.31617 * 120.00650 * 11.14418 * 17 15 13 19 19 Si 1.86802 * 119.99766 * 191.14215 * 17 15 13 20 20 H 1.48494 * 109.47576 * 90.00070 * 19 17 15 21 21 H 1.48501 * 109.47234 * 210.00393 * 19 17 15 22 22 H 1.48510 * 109.47020 * 329.99855 * 19 17 15 23 23 C 1.38368 * 120.30691 * 0.55424 * 8 7 6 24 24 C 1.37948 * 120.14497 * 359.72366 * 23 8 7 25 25 H 1.09003 * 109.46466 * 60.00152 * 1 2 3 26 26 H 1.08997 * 109.47531 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47037 * 300.01026 * 1 2 3 28 28 H 1.07994 * 120.07484 * 0.02628 * 6 5 3 29 29 H 1.07994 * 119.92608 * 179.69870 * 7 6 5 30 30 H 1.08999 * 109.46556 * 30.27882 * 9 8 7 31 31 H 1.09006 * 109.46755 * 150.27472 * 9 8 7 32 32 H 1.08995 * 109.47661 * 94.14823 * 14 13 10 33 33 H 1.09007 * 109.46883 * 214.14811 * 14 13 10 34 34 H 1.09002 * 109.47135 * 334.14511 * 14 13 10 35 35 H 0.96998 * 120.00205 * 180.02562 * 18 17 15 36 36 H 1.08000 * 119.92822 * 179.74269 * 23 8 7 37 37 H 1.08005 * 120.07501 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4022 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.1761 2.5199 0.0000 7 6 5.5540 2.5848 -0.0056 8 6 6.3044 1.4224 0.0008 9 6 7.8095 1.5012 0.0009 10 16 8.4134 1.5319 -1.7092 11 8 8.1825 0.2809 -2.3422 12 8 8.0531 2.7515 -2.3434 13 7 10.0607 1.6190 -1.5642 14 6 10.7226 2.9244 -1.5007 15 6 10.8044 0.4707 -1.5035 16 1 10.4061 -0.4521 -1.8989 17 6 12.0700 0.4927 -0.9338 18 7 12.4698 1.5498 -0.2592 19 14 13.2058 -0.9780 -1.1244 20 1 14.0266 -0.8140 -2.3509 21 1 14.0977 -1.0714 0.0593 22 1 12.3959 -2.2181 -1.2329 23 6 5.6795 0.1878 0.0013 24 6 4.3023 0.1085 0.0012 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8898 28 1 3.5915 3.4280 -0.0004 29 1 6.0481 3.5451 -0.0109 30 1 8.1256 2.4092 0.5144 31 1 8.2187 0.6316 0.5153 32 1 10.8631 3.2103 -0.4584 33 1 11.6923 2.8646 -1.9949 34 1 10.1048 3.6697 -2.0018 35 1 13.3543 1.5653 0.1386 36 1 6.2713 -0.7156 0.0022 37 1 3.8157 -0.8557 0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194654374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:05 Heat of formation + Delta-G solvation = -140.396601 kcal Electronic energy + Delta-G solvation = -23513.964600 eV Core-core repulsion = 19769.357546 eV Total energy + Delta-G solvation = -3744.607054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.69474 -40.06459 -37.67591 -37.57536 -37.54404 -36.47333 -34.19733 -33.36019 -32.17104 -29.62597 -28.31302 -27.93635 -25.41004 -24.10383 -23.80387 -21.83216 -20.27054 -19.17685 -18.95107 -18.42964 -18.25294 -17.44896 -17.30364 -16.74106 -16.43407 -16.13186 -15.98758 -15.67415 -15.11313 -14.70749 -14.60982 -14.50637 -14.38086 -13.74385 -13.68045 -13.46515 -13.18069 -13.07741 -13.01456 -12.86389 -12.73211 -12.67623 -12.34186 -12.14408 -12.09241 -11.94570 -11.86439 -11.80876 -11.67319 -11.11502 -10.15021 -10.13584 -9.73338 -8.39777 -5.93744 -0.70500 -0.11870 0.23398 1.35913 1.52246 1.55115 1.60020 1.64023 2.15622 2.48234 2.61645 2.91084 3.25885 3.48493 3.55384 3.68749 3.81966 3.87025 4.19855 4.23660 4.28457 4.32305 4.47834 4.53787 4.61157 4.68739 4.83496 4.92138 5.04749 5.05751 5.12048 5.24298 5.26171 5.36862 5.38363 5.58918 5.69260 6.39695 6.56920 6.75980 7.22488 8.56588 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.029128 B = 0.003193 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.057593 B = 8767.941444 C = 9225.993116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.518 3.482 4 O -0.533 6.533 5 C -0.152 4.152 6 C -0.052 4.052 7 C -0.141 4.141 8 C -0.046 4.046 9 C -0.611 4.611 10 S 2.485 3.515 11 O -1.006 7.006 12 O -1.015 7.015 13 N -0.822 5.822 14 C 0.124 3.876 15 C -0.274 4.274 16 H 0.109 0.891 17 C -0.001 4.001 18 N -0.855 5.855 19 Si 0.988 3.012 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.260 1.260 23 C -0.143 4.143 24 C -0.048 4.048 25 H 0.063 0.937 26 H 0.136 0.864 27 H 0.065 0.935 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.282 0.718 36 H 0.148 0.852 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.094 -3.196 4.744 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.364 3.636 4 O -0.425 6.425 5 C -0.154 4.154 6 C -0.070 4.070 7 C -0.160 4.160 8 C -0.048 4.048 9 C -0.732 4.732 10 S 2.586 3.414 11 O -0.995 6.995 12 O -1.005 7.005 13 N -0.646 5.646 14 C -0.022 4.022 15 C -0.420 4.420 16 H 0.127 0.873 17 C -0.211 4.211 18 N -0.494 5.494 19 Si 0.811 3.189 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.184 1.184 23 C -0.162 4.162 24 C -0.066 4.066 25 H 0.082 0.918 26 H 0.154 0.846 27 H 0.084 0.916 28 H 0.168 0.832 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.166 0.834 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.911 -2.741 4.055 13.807 hybrid contribution 0.565 -0.201 0.755 0.964 sum -12.346 -2.942 4.810 13.573 Atomic orbital electron populations 1.23636 0.73964 1.06085 1.02773 1.86539 1.25513 1.31342 1.83730 1.21151 0.88909 0.81670 0.71845 1.90799 1.67250 1.36891 1.47544 1.19244 0.89324 0.95462 1.11366 1.21369 0.94059 0.97450 0.94098 1.21312 0.93761 0.98981 1.01942 1.19791 0.93501 0.94756 0.96735 1.30115 0.99491 1.11531 1.32038 1.13116 0.74578 0.72503 0.81170 1.93321 1.85484 1.45064 1.75667 1.93318 1.83916 1.47036 1.76245 1.53896 1.20630 1.10738 1.79326 1.21302 0.97137 0.82210 1.01528 1.20172 0.97798 0.90691 1.33369 0.87324 1.26446 0.99995 1.00797 0.93826 1.70138 1.20773 1.29473 1.29025 0.84982 0.77757 0.77916 0.78292 1.19626 1.19685 1.18404 1.21436 0.95362 0.97843 1.01546 1.21665 0.92907 0.98872 0.93125 0.91830 0.84551 0.91590 0.83204 0.83514 0.84502 0.84478 0.92689 0.91666 0.92770 0.90796 0.83447 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.61 16 2 O -0.36 -7.77 9.82 -56.22 -0.55 -8.33 16 3 C 0.52 14.02 7.90 70.33 0.56 14.58 16 4 O -0.53 -16.52 16.14 19.96 0.32 -16.20 16 5 C -0.15 -4.29 5.87 -20.10 -0.12 -4.40 16 6 C -0.05 -1.49 9.60 22.54 0.22 -1.28 16 7 C -0.14 -4.41 9.68 22.23 0.22 -4.20 16 8 C -0.05 -1.55 5.15 -19.80 -0.10 -1.65 16 9 C -0.61 -21.94 6.30 71.24 0.45 -21.49 16 10 S 2.49 111.52 5.37 -56.49 -0.30 111.22 16 11 O -1.01 -50.37 16.77 -127.65 -2.14 -52.51 16 12 O -1.02 -49.12 16.53 -127.65 -2.11 -51.23 16 13 N -0.82 -38.60 3.24 -364.89 -1.18 -39.78 16 14 C 0.12 5.45 8.90 127.77 1.14 6.59 16 15 C -0.27 -13.26 9.40 84.03 0.79 -12.47 16 16 H 0.11 5.31 7.08 -2.91 -0.02 5.29 16 17 C 0.00 -0.02 5.13 84.86 0.44 0.41 16 18 N -0.85 -39.40 10.57 21.65 0.23 -39.17 16 19 Si 0.99 36.07 29.57 68.60 2.03 38.10 16 20 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 23 C -0.14 -4.35 9.68 22.23 0.22 -4.13 16 24 C -0.05 -1.26 9.62 22.54 0.22 -1.05 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.15 3.88 7.65 -2.91 -0.02 3.86 16 29 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.14 4.48 8.08 -2.39 -0.02 4.46 16 31 H 0.14 4.68 8.08 -2.39 -0.02 4.66 16 32 H 0.05 2.35 7.42 -2.39 -0.02 2.33 16 33 H 0.06 2.94 7.18 -2.38 -0.02 2.92 16 34 H 0.05 2.24 6.83 -2.39 -0.02 2.23 16 35 H 0.28 12.05 8.31 -92.71 -0.77 11.28 16 36 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.17 3.38 7.61 -2.91 -0.02 3.35 16 Total: -1.00 -63.08 335.89 2.59 -60.49 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 1.09 Total: 24.89 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 5.21 Total: -27.48 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -0.95 Total: -78.96 kcal Atomic # 8 Polarization: -123.78 SS G_CDS: -4.48 Total: -128.27 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Atomic # 16 Polarization: 111.52 SS G_CDS: -0.30 Total: 111.22 kcal Total: -63.08 2.59 -60.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194654374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.904 kcal (2) G-P(sol) polarization free energy of solvation -63.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds