Wall clock time and date at job start Fri Apr 10 2020 14:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 89.99908 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 S 1.65603 * 119.99626 * 180.02562 * 10 8 7 12 12 O 1.42097 * 104.27438 * 181.07626 * 11 10 8 13 13 O 1.42098 * 104.27936 * 308.93178 * 11 10 8 14 14 C 1.81401 * 104.44778 * 65.00306 * 11 10 8 15 15 C 1.50703 * 109.46689 * 179.97438 * 14 11 10 16 16 H 1.07992 * 120.00150 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99570 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99667 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00140 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47414 * 89.99889 * 19 17 15 21 21 H 1.48507 * 109.47093 * 209.99887 * 19 17 15 22 22 H 1.48499 * 109.47083 * 329.99487 * 19 17 15 23 23 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 24 24 C 1.38141 * 120.05541 * 359.45293 * 23 6 5 25 25 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 26 26 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 28 28 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 29 29 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 31 31 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 32 32 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 33 33 H 1.08992 * 109.47248 * 299.99512 * 14 11 10 34 34 H 1.09003 * 109.46929 * 60.00161 * 14 11 10 35 35 H 0.97003 * 120.00144 * 179.97438 * 18 17 15 36 36 H 1.07999 * 119.97019 * 179.70188 * 23 6 5 37 37 H 1.07998 * 120.03323 * 180.24999 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2136 5.4676 -1.4177 9 8 3.8550 4.7665 -2.3401 10 7 4.8146 6.6488 -1.6629 11 16 5.0640 7.1425 -3.2238 12 8 5.7290 8.3916 -3.0942 13 8 5.7010 6.0343 -3.8445 14 6 3.3956 7.3764 -3.8965 15 6 3.4913 7.8321 -5.3298 16 1 4.4589 7.9670 -5.7901 17 6 2.3434 8.0757 -6.0538 18 7 2.4269 8.4738 -7.3044 19 14 0.6698 7.8416 -5.2578 20 1 0.2416 9.1136 -4.6223 21 1 -0.3197 7.4476 -6.2927 22 1 0.7570 6.7774 -4.2258 23 6 1.9211 3.6047 0.0080 24 6 1.2915 2.3751 0.0013 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 4.0209 0.3799 -0.0005 29 1 5.1345 2.5749 -0.0008 30 1 4.9444 4.9376 0.5161 31 1 3.3584 5.7457 0.5177 32 1 5.1011 7.2095 -0.9252 33 1 2.8498 6.4342 -3.8501 34 1 2.8699 8.1302 -3.3103 35 1 1.6194 8.6448 -7.8139 36 1 1.3343 4.5113 0.0141 37 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821583960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:41 Heat of formation + Delta-G solvation = -155.026816 kcal Electronic energy + Delta-G solvation = -23523.368404 eV Core-core repulsion = 19778.126936 eV Total energy + Delta-G solvation = -3745.241468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.46175 -40.72028 -38.44812 -38.09300 -37.06390 -35.54728 -35.34075 -33.19396 -31.98982 -31.83014 -29.03814 -27.51368 -25.16498 -23.71389 -23.36326 -21.79084 -20.74964 -19.61882 -19.11639 -18.71274 -18.33023 -17.64796 -17.24036 -16.63966 -16.52506 -16.43178 -16.23583 -16.02020 -15.49556 -15.08270 -14.74985 -14.66708 -14.39880 -14.31515 -13.75851 -13.63533 -13.44523 -13.22731 -13.11720 -12.99968 -12.74565 -12.65972 -12.49037 -12.33040 -11.99913 -11.96991 -11.90358 -11.69328 -11.32759 -11.19032 -10.95341 -9.91480 -9.06586 -8.47914 -6.64635 -0.80434 0.41166 0.44140 1.14657 1.28939 1.34173 1.44979 1.68801 2.25021 2.39442 2.71293 2.78346 2.83977 3.28129 3.55604 3.72515 3.86011 3.98280 4.16566 4.24407 4.37995 4.38968 4.41781 4.45364 4.49176 4.60455 4.69511 4.75138 4.81601 5.11544 5.16207 5.29924 5.39962 5.64057 5.78109 5.79385 5.88294 6.39021 6.45623 6.58467 7.03852 8.67361 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.004102 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.866319 B = 6823.984884 C = 8179.084797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.110 3.890 4 C -0.170 4.170 5 C -0.073 4.073 6 C -0.125 4.125 7 C -0.087 4.087 8 C 0.526 3.474 9 O -0.530 6.530 10 N -1.039 6.039 11 S 2.609 3.391 12 O -0.979 6.979 13 O -0.987 6.987 14 C -0.473 4.473 15 C -0.557 4.557 16 H 0.042 0.958 17 C 0.026 3.974 18 N -0.930 5.930 19 Si 0.950 3.050 20 H -0.246 1.246 21 H -0.277 1.277 22 H -0.242 1.242 23 C -0.074 4.074 24 C -0.216 4.216 25 H 0.056 0.944 26 H 0.118 0.882 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.451 0.549 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.277 0.723 36 H 0.144 0.856 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 -11.065 24.661 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.065 3.935 4 C -0.188 4.188 5 C -0.091 4.091 6 C -0.125 4.125 7 C -0.127 4.127 8 C 0.315 3.685 9 O -0.403 6.403 10 N -0.807 5.807 11 S 2.708 3.292 12 O -0.970 6.970 13 O -0.977 6.977 14 C -0.607 4.607 15 C -0.596 4.596 16 H 0.060 0.940 17 C -0.175 4.175 18 N -0.567 5.567 19 Si 0.770 3.230 20 H -0.170 1.170 21 H -0.202 1.202 22 H -0.165 1.165 23 C -0.092 4.092 24 C -0.235 4.235 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.172 0.828 32 H 0.292 0.708 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.162 0.838 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.402 -11.614 23.458 26.543 hybrid contribution -1.106 0.359 -0.337 1.211 sum -5.509 -11.255 23.121 26.298 Atomic orbital electron populations 1.23315 0.76645 1.05470 1.02109 1.86030 1.23344 1.27053 1.88750 1.19303 0.92846 0.84715 0.96619 1.20623 0.91749 0.99289 1.07153 1.21121 1.00826 0.91020 0.96130 1.19475 0.93868 0.94535 1.04668 1.20901 1.06111 0.95652 0.90066 1.21647 0.73777 0.78516 0.94570 1.90933 1.48199 1.53242 1.47969 1.54907 1.67683 1.28732 1.29334 1.04977 0.78166 0.72741 0.73288 1.93511 1.73476 1.44863 1.85110 1.93499 1.74354 1.54245 1.75606 1.28149 1.18997 1.07532 1.06030 1.20314 0.95071 1.49723 0.94464 0.93963 1.25995 1.04236 0.92333 0.94980 1.70009 1.31456 1.44904 1.10344 0.85665 0.77063 0.80830 0.79447 1.16964 1.20213 1.16524 1.21153 0.94174 0.98005 0.95887 1.21445 1.01019 0.92159 1.08852 0.92492 0.86353 0.91314 0.84632 0.83723 0.83364 0.82845 0.70804 0.88217 0.86718 0.91352 0.83775 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.28 10.50 -92.39 -0.97 -8.25 16 3 C 0.11 2.54 6.69 22.51 0.15 2.69 16 4 C -0.17 -3.82 9.99 22.37 0.22 -3.60 16 5 C -0.07 -1.52 9.69 22.25 0.22 -1.30 16 6 C -0.12 -2.46 4.37 -19.85 -0.09 -2.55 16 7 C -0.09 -1.21 5.83 29.10 0.17 -1.04 16 8 C 0.53 13.67 7.56 87.66 0.66 14.33 16 9 O -0.53 -19.86 14.14 13.34 0.19 -19.67 16 10 N -1.04 -26.14 5.60 -173.53 -0.97 -27.11 16 11 S 2.61 106.28 5.03 -56.49 -0.28 105.99 16 12 O -0.98 -42.57 18.08 -127.65 -2.31 -44.87 16 13 O -0.99 -48.84 17.04 -120.72 -2.06 -50.90 16 14 C -0.47 -21.46 4.71 71.24 0.34 -21.12 16 15 C -0.56 -32.56 9.68 25.60 0.25 -32.31 16 16 H 0.04 2.74 7.96 -2.91 -0.02 2.72 16 17 C 0.03 1.53 5.47 84.66 0.46 1.99 16 18 N -0.93 -57.57 13.96 21.45 0.30 -57.27 16 19 Si 0.95 41.92 27.47 68.60 1.88 43.80 16 20 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 23 C -0.07 -1.47 9.69 22.25 0.22 -1.25 16 24 C -0.22 -4.43 9.04 22.37 0.20 -4.23 16 25 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 26 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 28 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.15 1.03 8.08 -2.39 -0.02 1.01 16 31 H 0.15 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.45 6.41 8.79 -96.75 -0.85 5.56 16 33 H 0.10 4.49 6.25 -2.39 -0.01 4.48 16 34 H 0.11 4.34 7.57 -2.39 -0.02 4.33 16 35 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.14 2.28 6.30 -2.91 -0.02 2.26 16 Total: -1.00 -89.08 334.08 -0.10 -89.19 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.20 Total: 16.12 kcal Atomic # 6 Polarization: -50.94 SS G_CDS: 3.91 Total: -47.03 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -0.67 Total: -84.38 kcal Atomic # 8 Polarization: -118.55 SS G_CDS: -5.15 Total: -123.69 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.88 Total: 43.80 kcal Atomic # 16 Polarization: 106.28 SS G_CDS: -0.28 Total: 105.99 kcal Total: -89.08 -0.10 -89.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821583960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.841 kcal (2) G-P(sol) polarization free energy of solvation -89.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds