Wall clock time and date at job start Fri Apr 10 2020 14:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00133 * 2 1 4 4 C 1.38806 * 120.01976 * 0.02562 * 3 2 1 5 5 C 1.38167 * 120.08640 * 179.97438 * 4 3 2 6 6 C 1.38163 * 120.12285 * 359.74649 * 5 4 3 7 7 C 1.38894 * 120.03918 * 0.51197 * 6 5 4 8 8 N 1.39919 * 120.04145 * 179.76485 * 7 6 5 9 9 C 1.34780 * 120.00200 * 214.81435 * 8 7 6 10 10 O 1.21280 * 119.99554 * 355.38385 * 9 8 7 11 11 C 1.50697 * 119.99977 * 175.38026 * 9 8 7 12 12 S 1.81405 * 109.46969 * 180.02562 * 11 9 8 13 13 O 1.42103 * 108.57706 * 294.48889 * 12 11 9 14 14 O 1.42094 * 108.57571 * 65.51381 * 12 11 9 15 15 C 1.81401 * 101.92236 * 180.02562 * 12 11 9 16 16 C 1.50693 * 109.47100 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00408 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00214 * 180.02562 * 16 15 12 19 19 N 1.31521 * 119.99645 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00480 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47036 * 59.99528 * 20 18 16 22 22 H 1.48497 * 109.47763 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47369 * 300.00181 * 20 18 16 24 24 C 1.38584 * 120.02141 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.46973 * 300.00065 * 1 2 3 26 26 H 1.08995 * 109.47334 * 59.99832 * 1 2 3 27 27 H 1.08997 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.95471 * 359.96603 * 4 3 2 29 29 H 1.07998 * 119.93652 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.98102 * 180.27593 * 6 5 4 31 31 H 0.97007 * 120.00329 * 34.81968 * 8 7 6 32 32 H 1.09003 * 109.47172 * 60.00214 * 11 9 8 33 33 H 1.08996 * 109.47615 * 300.00300 * 11 9 8 34 34 H 1.08996 * 109.47204 * 300.00446 * 15 12 11 35 35 H 1.09004 * 109.46872 * 59.99771 * 15 12 11 36 36 H 0.97001 * 119.99668 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.06071 * 0.04736 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9163 3.6071 0.0011 6 6 3.2958 3.6839 0.0064 7 6 4.0569 2.5221 0.0004 8 7 5.4539 2.5999 0.0008 9 6 6.1801 1.6840 -0.6703 10 8 5.6281 0.7454 -1.2043 11 6 7.6778 1.8263 -0.7570 12 16 8.3613 0.4485 -1.7190 13 8 8.1396 -0.7582 -1.0019 14 8 7.8958 0.5559 -3.0572 15 6 10.1372 0.8177 -1.6927 16 6 10.8823 -0.2436 -2.4603 17 1 10.3418 -1.0590 -2.9178 18 6 12.2543 -0.1744 -2.5776 19 7 12.9127 0.8183 -2.0200 20 14 13.1781 -1.4904 -3.5284 21 1 12.6985 -1.5142 -4.9337 22 1 14.6318 -1.1881 -3.5071 23 1 12.9381 -2.8148 -2.9011 24 6 3.4299 1.2839 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.2119 2.3183 0.0004 29 1 1.3261 4.5115 0.0019 30 1 3.7826 4.6480 0.0113 31 1 5.8999 3.3130 0.4841 32 1 8.1026 1.8151 0.2467 33 1 7.9257 2.7684 -1.2459 34 1 10.3130 1.7897 -2.1534 35 1 10.4893 0.8355 -0.6612 36 1 13.8780 0.8668 -2.1022 37 1 4.0194 0.3790 -0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:48 Heat of formation + Delta-G solvation = -111.444497 kcal Electronic energy + Delta-G solvation = -23109.192396 eV Core-core repulsion = 19365.840799 eV Total energy + Delta-G solvation = -3743.351597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86246 -39.67416 -37.56287 -35.98898 -35.04317 -34.72223 -33.36411 -31.30929 -30.57190 -29.14678 -28.74658 -27.41595 -23.70381 -23.28659 -22.30211 -20.77912 -18.86236 -17.95522 -17.56810 -16.95138 -16.47373 -16.33437 -16.06162 -15.89673 -15.76789 -15.41097 -15.04700 -14.72467 -14.33404 -13.84533 -13.79089 -13.58582 -13.04383 -12.62746 -12.50323 -12.47531 -12.16791 -12.05763 -11.54243 -11.41341 -11.33361 -11.08702 -11.03689 -10.87242 -10.64112 -10.47968 -10.43081 -10.10452 -9.82908 -9.13525 -8.71441 -8.60615 -8.28650 -6.35124 -4.44372 0.79868 1.03088 1.25141 2.36070 2.68403 3.15598 3.25844 3.27233 3.33331 3.59109 3.74139 4.20361 4.32264 4.57319 4.60074 4.80765 4.85945 4.86678 4.90301 4.94681 5.01572 5.13770 5.22766 5.27949 5.33646 5.39521 5.63095 5.98246 6.04629 6.17790 6.24717 6.58699 6.61829 6.62861 7.05738 7.23187 7.47066 7.72495 7.83093 8.57566 9.22981 10.76776 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.032762 B = 0.002805 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.456328 B = 9979.647452 C =10573.751279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.146 3.854 4 C -0.226 4.226 5 C -0.063 4.063 6 C -0.182 4.182 7 C 0.184 3.816 8 N -0.668 5.668 9 C 0.544 3.456 10 O -0.501 6.501 11 C -0.677 4.677 12 S 2.420 3.580 13 O -0.940 6.940 14 O -0.940 6.940 15 C -0.404 4.404 16 C -0.530 4.530 17 H 0.073 0.927 18 C 0.075 3.925 19 N -0.883 5.883 20 Si 0.907 3.093 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.268 1.268 24 C -0.156 4.156 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.416 0.584 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.269 0.731 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 9.114 8.014 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.100 3.900 4 C -0.245 4.245 5 C -0.082 4.082 6 C -0.202 4.202 7 C 0.090 3.910 8 N -0.314 5.314 9 C 0.331 3.669 10 O -0.375 6.375 11 C -0.798 4.798 12 S 2.600 3.400 13 O -0.937 6.937 14 O -0.937 6.937 15 C -0.539 4.539 16 C -0.569 4.569 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.519 5.519 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.177 4.177 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.253 0.747 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.518 7.665 7.286 23.083 hybrid contribution 0.936 0.892 0.303 1.328 sum -19.583 8.557 7.589 22.678 Atomic orbital electron populations 1.23067 0.78398 1.04025 1.01237 1.86127 1.21306 1.26731 1.88409 1.18789 0.91760 0.84280 0.95185 1.21211 1.00035 0.92306 1.10942 1.20666 0.93655 0.97064 0.96782 1.20802 0.94024 0.96867 1.08532 1.17400 0.82376 0.93246 0.98004 1.43411 1.04389 1.31538 1.52065 1.19653 0.87794 0.81937 0.77515 1.90874 1.72122 1.30022 1.44436 1.31227 1.01150 1.27618 1.19853 1.08656 0.80392 0.75705 0.75246 1.93478 1.86002 1.39776 1.74417 1.93477 1.81294 1.85820 1.33081 1.27595 1.12410 1.07145 1.06741 1.20327 0.92565 1.08660 1.35321 0.90850 1.24927 0.97082 0.96123 0.94926 1.69935 1.08668 1.30565 1.42764 0.86391 0.78213 0.81513 0.80642 1.19353 1.20751 1.19342 1.20556 0.91934 0.98716 1.06481 0.92689 0.92601 0.88175 0.85412 0.85321 0.85382 0.74686 0.82362 0.82364 0.89568 0.89555 0.92133 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.97 10.49 -19.44 -0.20 -4.18 16 3 C 0.15 1.90 6.68 -39.24 -0.26 1.64 16 4 C -0.23 -2.27 9.04 -39.40 -0.36 -2.62 16 5 C -0.06 -0.57 10.03 -39.64 -0.40 -0.97 16 6 C -0.18 -1.81 9.96 -39.37 -0.39 -2.20 16 7 C 0.18 2.37 6.30 -83.72 -0.53 1.84 16 8 N -0.67 -7.99 5.34 -9.88 -0.05 -8.04 16 9 C 0.54 8.73 7.69 -10.99 -0.08 8.64 16 10 O -0.50 -10.30 13.06 2.56 0.03 -10.27 16 11 C -0.68 -9.53 6.29 36.00 0.23 -9.31 16 12 S 2.42 51.18 3.88 -107.50 -0.42 50.76 16 13 O -0.94 -22.92 17.94 -59.53 -1.07 -23.99 16 14 O -0.94 -23.04 17.95 -59.52 -1.07 -24.11 16 15 C -0.40 -9.28 5.56 36.00 0.20 -9.08 16 16 C -0.53 -14.55 9.13 -34.44 -0.31 -14.86 16 17 H 0.07 2.02 7.71 -52.49 -0.40 1.61 16 18 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 19 N -0.88 -24.42 13.29 55.43 0.74 -23.68 16 20 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.16 -2.34 8.64 -39.25 -0.34 -2.68 16 25 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 26 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.13 0.94 6.29 -52.48 -0.33 0.61 16 29 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.42 3.17 8.82 -40.82 -0.36 2.81 16 32 H 0.16 1.63 8.14 -51.92 -0.42 1.20 16 33 H 0.16 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 35 H 0.09 1.88 8.14 -51.92 -0.42 1.46 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.15 2.64 6.22 -52.49 -0.33 2.31 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -38.39 336.89 -7.65 -46.04 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.31 Total: 2.88 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -1.35 Total: -26.44 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.68 Total: -31.73 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -2.31 Total: -62.54 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 51.18 SS G_CDS: -0.42 Total: 50.76 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -38.39 -7.65 -46.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.409 kcal (2) G-P(sol) polarization free energy of solvation -38.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds