Wall clock time and date at job start Fri Apr 10 2020 14:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00133 * 2 1 4 4 C 1.38806 * 120.01976 * 0.02562 * 3 2 1 5 5 C 1.38167 * 120.08640 * 179.97438 * 4 3 2 6 6 C 1.38163 * 120.12285 * 359.74649 * 5 4 3 7 7 C 1.38894 * 120.03918 * 0.51197 * 6 5 4 8 8 N 1.39919 * 120.04145 * 179.76485 * 7 6 5 9 9 C 1.34780 * 120.00200 * 214.81435 * 8 7 6 10 10 O 1.21280 * 119.99554 * 355.38385 * 9 8 7 11 11 C 1.50697 * 119.99977 * 175.38026 * 9 8 7 12 12 S 1.81405 * 109.46969 * 180.02562 * 11 9 8 13 13 O 1.42103 * 108.57706 * 294.48889 * 12 11 9 14 14 O 1.42094 * 108.57571 * 65.51381 * 12 11 9 15 15 C 1.81401 * 101.92236 * 180.02562 * 12 11 9 16 16 C 1.50693 * 109.47100 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00408 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00214 * 180.02562 * 16 15 12 19 19 N 1.31521 * 119.99645 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00480 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47036 * 59.99528 * 20 18 16 22 22 H 1.48497 * 109.47763 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47369 * 300.00181 * 20 18 16 24 24 C 1.38584 * 120.02141 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.46973 * 300.00065 * 1 2 3 26 26 H 1.08995 * 109.47334 * 59.99832 * 1 2 3 27 27 H 1.08997 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.95471 * 359.96603 * 4 3 2 29 29 H 1.07998 * 119.93652 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.98102 * 180.27593 * 6 5 4 31 31 H 0.97007 * 120.00329 * 34.81968 * 8 7 6 32 32 H 1.09003 * 109.47172 * 60.00214 * 11 9 8 33 33 H 1.08996 * 109.47615 * 300.00300 * 11 9 8 34 34 H 1.08996 * 109.47204 * 300.00446 * 15 12 11 35 35 H 1.09004 * 109.46872 * 59.99771 * 15 12 11 36 36 H 0.97001 * 119.99668 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.06071 * 0.04736 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9163 3.6071 0.0011 6 6 3.2958 3.6839 0.0064 7 6 4.0569 2.5221 0.0004 8 7 5.4539 2.5999 0.0008 9 6 6.1801 1.6840 -0.6703 10 8 5.6281 0.7454 -1.2043 11 6 7.6778 1.8263 -0.7570 12 16 8.3613 0.4485 -1.7190 13 8 8.1396 -0.7582 -1.0019 14 8 7.8958 0.5559 -3.0572 15 6 10.1372 0.8177 -1.6927 16 6 10.8823 -0.2436 -2.4603 17 1 10.3418 -1.0590 -2.9178 18 6 12.2543 -0.1744 -2.5776 19 7 12.9127 0.8183 -2.0200 20 14 13.1781 -1.4904 -3.5284 21 1 12.6985 -1.5142 -4.9337 22 1 14.6318 -1.1881 -3.5071 23 1 12.9381 -2.8148 -2.9011 24 6 3.4299 1.2839 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.2119 2.3183 0.0004 29 1 1.3261 4.5115 0.0019 30 1 3.7826 4.6480 0.0113 31 1 5.8999 3.3130 0.4841 32 1 8.1026 1.8151 0.2467 33 1 7.9257 2.7684 -1.2459 34 1 10.3130 1.7897 -2.1534 35 1 10.4893 0.8355 -0.6612 36 1 13.8780 0.8668 -2.1022 37 1 4.0194 0.3790 -0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:47 Heat of formation + Delta-G solvation = -142.888815 kcal Electronic energy + Delta-G solvation = -23110.555924 eV Core-core repulsion = 19365.840799 eV Total energy + Delta-G solvation = -3744.715125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.88871 -40.64599 -38.49226 -37.80234 -36.81736 -35.80158 -35.37893 -32.38575 -31.50392 -30.99567 -29.77298 -28.08461 -25.59950 -24.31301 -23.18495 -21.86299 -19.94090 -19.50104 -18.98275 -18.59643 -17.60680 -17.47745 -17.21878 -16.98044 -16.83307 -16.65043 -16.53606 -16.21710 -15.99972 -15.12234 -14.65956 -14.50955 -14.43638 -14.02113 -13.90743 -13.58917 -13.39383 -13.30694 -12.94177 -12.87624 -12.76862 -12.71291 -12.52684 -12.31393 -12.16793 -11.99532 -11.77746 -11.45466 -11.22169 -10.94049 -10.75537 -9.54502 -9.12034 -8.40746 -6.55630 -0.85773 0.12587 0.41696 1.21476 1.38913 1.41263 1.49596 1.66148 2.14579 2.32072 2.38066 2.75230 2.93491 2.98592 3.26155 3.42309 3.86483 3.98148 4.08708 4.19968 4.22470 4.26017 4.38550 4.42272 4.51838 4.65654 4.72446 4.77161 4.79772 5.21339 5.22111 5.29718 5.38461 5.43321 5.75912 5.77812 6.09944 6.43851 6.52334 6.81108 7.14367 8.71266 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.032762 B = 0.002805 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.456328 B = 9979.647452 C =10573.751279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.347 6.347 3 C 0.126 3.874 4 C -0.219 4.219 5 C -0.056 4.056 6 C -0.171 4.171 7 C 0.162 3.838 8 N -0.643 5.643 9 C 0.533 3.467 10 O -0.558 6.558 11 C -0.642 4.642 12 S 2.427 3.573 13 O -0.987 6.987 14 O -0.987 6.987 15 C -0.414 4.414 16 C -0.567 4.567 17 H 0.056 0.944 18 C 0.030 3.970 19 N -0.904 5.904 20 Si 0.957 3.043 21 H -0.267 1.267 22 H -0.265 1.265 23 H -0.267 1.267 24 C -0.196 4.196 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.157 0.843 29 H 0.171 0.829 30 H 0.164 0.836 31 H 0.439 0.561 32 H 0.208 0.792 33 H 0.209 0.791 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.275 0.725 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.183 12.420 9.096 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C 0.080 3.920 4 C -0.238 4.238 5 C -0.074 4.074 6 C -0.191 4.191 7 C 0.068 3.932 8 N -0.290 5.290 9 C 0.321 3.679 10 O -0.436 6.436 11 C -0.771 4.771 12 S 2.614 3.386 13 O -0.984 6.984 14 O -0.984 6.984 15 C -0.548 4.548 16 C -0.606 4.606 17 H 0.074 0.926 18 C -0.173 4.173 19 N -0.541 5.541 20 Si 0.779 3.221 21 H -0.192 1.192 22 H -0.189 1.189 23 H -0.192 1.192 24 C -0.217 4.217 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.175 0.825 29 H 0.188 0.812 30 H 0.181 0.819 31 H 0.281 0.719 32 H 0.225 0.775 33 H 0.226 0.774 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -21.752 10.960 8.360 25.751 hybrid contribution 1.142 -0.023 0.065 1.144 sum -20.610 10.938 8.424 24.807 Atomic orbital electron populations 1.23378 0.75974 1.05516 1.02685 1.86081 1.23995 1.27434 1.88619 1.18999 0.91463 0.85496 0.96054 1.21585 1.01396 0.91569 1.09227 1.21226 0.93667 0.98052 0.94446 1.21205 0.94448 0.96948 1.06519 1.17643 0.82627 0.93578 0.99356 1.43128 1.04256 1.30850 1.50806 1.19937 0.88479 0.81959 0.77549 1.90885 1.73133 1.32456 1.47113 1.30754 0.99918 1.25135 1.21313 1.07706 0.79326 0.76757 0.74850 1.93420 1.86141 1.43924 1.74953 1.93417 1.81388 1.87163 1.36404 1.27593 1.14225 1.06276 1.06687 1.20710 0.93714 1.09738 1.36399 0.92628 1.25686 0.97818 0.98094 0.95724 1.69969 1.09163 1.31553 1.43393 0.85621 0.77869 0.79196 0.79384 1.19163 1.18913 1.19196 1.20517 0.93095 0.98449 1.09685 0.90771 0.91405 0.86912 0.82531 0.81150 0.81861 0.71940 0.77524 0.77426 0.88433 0.88477 0.91602 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.35 -9.18 10.49 -92.47 -0.97 -10.15 16 3 C 0.13 3.31 6.68 22.49 0.15 3.46 16 4 C -0.22 -3.82 9.04 22.39 0.20 -3.62 16 5 C -0.06 -0.76 10.03 22.23 0.22 -0.54 16 6 C -0.17 -2.76 9.96 22.41 0.22 -2.53 16 7 C 0.16 3.97 6.30 38.14 0.24 4.21 16 8 N -0.64 -13.99 5.34 -303.56 -1.62 -15.61 16 9 C 0.53 16.68 7.69 87.66 0.67 17.35 16 10 O -0.56 -24.05 13.06 -0.16 0.00 -24.05 16 11 C -0.64 -16.46 6.29 71.23 0.45 -16.01 16 12 S 2.43 104.74 3.88 -56.49 -0.22 104.52 16 13 O -0.99 -50.51 17.94 -125.74 -2.26 -52.77 16 14 O -0.99 -50.34 17.95 -125.76 -2.26 -52.60 16 15 C -0.41 -19.16 5.56 71.23 0.40 -18.76 16 16 C -0.57 -31.99 9.13 25.60 0.23 -31.76 16 17 H 0.06 3.23 7.71 -2.91 -0.02 3.20 16 18 C 0.03 1.66 5.46 84.65 0.46 2.12 16 19 N -0.90 -49.82 13.29 21.45 0.28 -49.54 16 20 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.20 -6.16 8.64 22.48 0.19 -5.96 16 25 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 26 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 27 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.16 1.73 6.29 -2.91 -0.02 1.71 16 29 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 30 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.44 4.92 8.82 -92.70 -0.82 4.10 16 32 H 0.21 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.21 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.10 4.22 8.14 -2.39 -0.02 4.20 16 35 H 0.10 4.21 8.14 -2.39 -0.02 4.19 16 36 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 37 H 0.11 4.29 6.22 -2.91 -0.02 4.27 16 Total: -1.00 -91.56 336.89 -0.16 -91.72 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.29 Total: 13.92 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 4.56 Total: -50.68 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -1.33 Total: -65.15 kcal Atomic # 8 Polarization: -134.08 SS G_CDS: -5.49 Total: -139.57 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 104.74 SS G_CDS: -0.22 Total: 104.52 kcal Total: -91.56 -0.16 -91.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.171 kcal (2) G-P(sol) polarization free energy of solvation -91.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds