Wall clock time and date at job start Fri Apr 10 2020 14:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99883 * 2 1 4 4 C 1.38738 * 120.05570 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94482 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05818 * 0.02784 * 5 4 3 7 7 C 1.50700 * 119.94746 * 179.97438 * 6 5 4 8 8 N 1.46501 * 112.99825 * 339.65801 * 7 6 5 9 9 S 1.65598 * 120.00198 * 181.35030 * 8 7 6 10 10 O 1.42098 * 106.40219 * 46.03519 * 9 8 7 11 11 O 1.42097 * 106.40347 * 178.95538 * 9 8 7 12 12 C 1.76192 * 107.21958 * 292.49410 * 9 8 7 13 13 H 1.08008 * 120.00222 * 354.55101 * 12 9 8 14 14 C 1.37885 * 120.00128 * 174.54678 * 12 9 8 15 15 N 1.31510 * 119.99830 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00152 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47117 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47432 * 119.99855 * 16 14 12 19 19 H 1.48505 * 109.47194 * 240.00255 * 16 14 12 20 20 C 1.54031 * 113.82183 * 111.48821 * 7 6 5 21 21 O 1.44573 * 85.38581 * 136.86155 * 20 7 6 22 22 C 1.44177 * 93.32596 * 335.80811 * 21 20 7 23 23 C 1.38270 * 120.11193 * 0.24667 * 6 5 4 24 24 C 1.38152 * 120.05181 * 359.45333 * 23 6 5 25 25 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46833 * 300.00113 * 1 2 3 27 27 H 1.09001 * 109.47137 * 59.99620 * 1 2 3 28 28 H 1.08004 * 120.02352 * 0.04727 * 4 3 2 29 29 H 1.08005 * 119.97133 * 179.97438 * 5 4 3 30 30 H 0.97006 * 120.00004 * 1.35642 * 8 7 6 31 31 H 0.97001 * 119.99875 * 179.97438 * 15 14 12 32 32 H 1.08998 * 113.86433 * 251.07680 * 20 7 6 33 33 H 1.09007 * 113.86001 * 22.77973 * 20 7 6 34 34 H 1.09003 * 113.86241 * 270.03857 * 22 21 20 35 35 H 1.08994 * 113.86860 * 138.33834 * 22 21 20 36 36 H 1.07993 * 119.97502 * 179.70716 * 23 6 5 37 37 H 1.07999 * 120.02591 * 180.25246 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6758 0.0017 7 6 3.9861 5.0185 0.0028 8 7 5.3728 4.9540 0.4709 9 16 6.2772 6.3374 0.5739 10 8 5.4550 7.3081 1.2069 11 8 7.5486 5.9492 1.0761 12 6 6.5455 6.9089 -1.0710 13 1 6.2137 6.3150 -1.9099 14 6 7.1790 8.1143 -1.2874 15 7 7.5825 8.8377 -0.2659 16 14 7.4627 8.7206 -3.0313 17 1 6.9185 7.7299 -3.9945 18 1 6.7765 10.0239 -3.2201 19 1 8.9194 8.8896 -3.2658 20 6 3.8080 5.8086 -1.3074 21 8 3.5802 6.9508 -0.4508 22 6 3.1585 6.1377 0.6626 23 6 1.9211 3.6048 0.0079 24 6 1.2915 2.3751 0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0209 0.3799 -0.0017 29 1 5.1346 2.5750 0.0000 30 1 5.7613 4.1009 0.7204 31 1 8.0285 9.6856 -0.4181 32 1 4.7155 5.8786 -1.9070 33 1 2.9340 5.5106 -1.8866 34 1 2.0868 5.9400 0.6833 35 1 3.5514 6.4684 1.6240 36 1 1.3343 4.5114 0.0140 37 1 0.2129 2.3202 0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:28 Heat of formation + Delta-G solvation = -87.074386 kcal Electronic energy + Delta-G solvation = -24703.560903 eV Core-core repulsion = 20961.266073 eV Total energy + Delta-G solvation = -3742.294830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.80225 -39.74543 -37.33889 -35.06728 -33.86804 -33.53080 -32.95190 -31.38217 -30.09541 -28.01398 -26.75419 -26.30303 -25.48837 -23.02975 -22.00595 -19.78837 -18.96635 -18.38793 -17.41027 -17.11079 -16.20614 -15.94048 -15.72762 -15.49681 -15.14948 -14.81309 -14.46521 -14.17903 -13.93145 -13.81773 -13.52298 -13.34070 -12.93221 -12.75280 -12.48744 -12.02399 -11.96659 -11.74363 -11.17516 -11.13764 -10.98710 -10.84018 -10.57210 -10.46149 -10.19476 -10.05254 -9.72747 -9.16705 -9.09208 -9.04939 -8.98080 -8.56482 -8.12687 -6.61830 -5.20112 1.25773 1.29132 2.33963 3.08150 3.11252 3.19162 3.24600 3.62315 4.07784 4.15466 4.53792 4.68222 4.73817 4.75151 4.78681 4.86052 4.88412 4.91494 5.18370 5.27106 5.33675 5.51924 5.62025 5.65717 5.86706 5.92118 6.04110 6.19029 6.25441 6.28992 6.41933 6.49652 6.62167 6.73166 6.84440 6.84816 7.23066 7.41420 7.83449 8.01018 8.97476 10.33033 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.004071 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.226311 B = 6875.912888 C = 7034.209488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.147 4.147 5 C -0.070 4.070 6 C -0.108 4.108 7 C 0.170 3.830 8 N -1.114 6.114 9 S 2.712 3.288 10 O -0.982 6.982 11 O -1.013 7.013 12 C -1.008 5.008 13 H 0.104 0.896 14 C 0.137 3.863 15 N -0.844 5.844 16 Si 0.917 3.083 17 H -0.263 1.263 18 H -0.272 1.272 19 H -0.273 1.273 20 C 0.001 3.999 21 O -0.336 6.336 22 C 0.019 3.981 23 C -0.073 4.073 24 C -0.204 4.204 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.403 0.597 31 H 0.288 0.712 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 -14.049 -1.691 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.166 4.166 5 C -0.088 4.088 6 C -0.110 4.110 7 C 0.079 3.921 8 N -0.866 5.866 9 S 2.812 3.188 10 O -0.972 6.972 11 O -1.003 7.003 12 C -1.141 5.141 13 H 0.122 0.878 14 C -0.081 4.081 15 N -0.474 5.474 16 Si 0.741 3.259 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.199 1.199 20 C -0.077 4.077 21 O -0.253 6.253 22 C -0.059 4.059 23 C -0.091 4.091 24 C -0.223 4.223 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.235 0.765 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.149 0.851 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.327 -13.237 -0.846 18.802 hybrid contribution -0.057 -0.174 -1.448 1.460 sum -13.384 -13.411 -2.295 19.085 Atomic orbital electron populations 1.23036 0.78555 1.03765 1.01393 1.86060 1.21265 1.27104 1.88893 1.19047 0.92391 0.84054 0.97003 1.20413 0.91308 0.98561 1.06320 1.20884 1.00401 0.90800 0.96707 1.19763 0.93582 0.94327 1.03313 1.21595 0.83431 0.91969 0.95153 1.56062 1.20188 1.27305 1.82997 1.00599 0.71288 0.70174 0.76743 1.93358 1.68618 1.57832 1.77373 1.93383 1.41646 1.82831 1.82465 1.30590 1.51819 1.15296 1.16413 0.87843 1.24657 0.90030 0.93962 0.99418 1.69901 1.32491 1.13253 1.31761 0.86190 0.78449 0.79163 0.82053 1.18714 1.19673 1.19852 1.25204 1.03241 0.84676 0.94588 1.90065 1.86458 1.25237 1.23586 1.24866 0.97615 0.87978 0.95466 1.20852 0.93610 0.97404 0.97243 1.21169 0.99893 0.92123 1.09128 0.88408 0.92649 0.92660 0.85086 0.84810 0.76463 0.90142 0.86028 0.90227 0.90528 0.86661 0.85066 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.41 10.50 -19.42 -0.20 -3.62 16 3 C 0.12 1.40 6.69 -39.21 -0.26 1.14 16 4 C -0.15 -1.77 9.99 -39.43 -0.39 -2.16 16 5 C -0.07 -0.91 9.23 -39.61 -0.37 -1.28 16 6 C -0.11 -1.52 5.26 -104.60 -0.55 -2.07 16 7 C 0.17 2.95 1.76 -131.89 -0.23 2.72 16 8 N -1.11 -21.85 5.79 -5.83 -0.03 -21.88 16 9 S 2.71 71.03 4.60 -107.50 -0.49 70.53 16 10 O -0.98 -27.90 13.69 -66.05 -0.90 -28.81 16 11 O -1.01 -29.54 18.02 -57.17 -1.03 -30.57 16 12 C -1.01 -27.17 7.83 30.60 0.24 -26.93 16 13 H 0.10 2.52 5.50 -52.48 -0.29 2.23 16 14 C 0.14 3.81 5.46 -17.82 -0.10 3.71 16 15 N -0.84 -24.90 13.08 55.43 0.73 -24.17 16 16 Si 0.92 20.72 29.54 -169.99 -5.02 15.70 16 17 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 C 0.00 0.03 7.67 37.64 0.29 0.31 16 21 O -0.34 -7.30 10.17 -56.72 -0.58 -7.88 16 22 C 0.02 0.35 7.44 37.64 0.28 0.63 16 23 C -0.07 -0.87 9.09 -39.60 -0.36 -1.23 16 24 C -0.20 -2.20 9.04 -39.43 -0.36 -2.56 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.13 1.64 6.37 -52.48 -0.33 1.30 16 30 H 0.40 6.78 6.69 -34.47 -0.23 6.55 16 31 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.12 2.36 4.75 -51.93 -0.25 2.11 16 33 H 0.08 1.15 8.04 -51.92 -0.42 0.73 16 34 H 0.08 1.07 5.91 -51.93 -0.31 0.76 16 35 H 0.12 2.32 6.52 -51.93 -0.34 1.98 16 36 H 0.13 1.37 6.14 -52.49 -0.32 1.05 16 37 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -36.16 312.01 -7.25 -43.41 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -3.59 Total: 9.13 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -0.82 Total: -26.54 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.69 Total: -46.06 kcal Atomic # 8 Polarization: -68.16 SS G_CDS: -2.71 Total: -70.88 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 71.03 SS G_CDS: -0.49 Total: 70.53 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.16 -7.25 -43.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.669 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds