Wall clock time and date at job start Fri Apr 10 2020 14:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99883 * 2 1 4 4 C 1.38738 * 120.05570 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94482 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05818 * 0.02784 * 5 4 3 7 7 C 1.50700 * 119.94746 * 179.97438 * 6 5 4 8 8 N 1.46501 * 112.99825 * 339.65801 * 7 6 5 9 9 S 1.65598 * 120.00198 * 181.35030 * 8 7 6 10 10 O 1.42098 * 106.40219 * 46.03519 * 9 8 7 11 11 O 1.42097 * 106.40347 * 178.95538 * 9 8 7 12 12 C 1.76192 * 107.21958 * 292.49410 * 9 8 7 13 13 H 1.08008 * 120.00222 * 354.55101 * 12 9 8 14 14 C 1.37885 * 120.00128 * 174.54678 * 12 9 8 15 15 N 1.31510 * 119.99830 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00152 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47117 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47432 * 119.99855 * 16 14 12 19 19 H 1.48505 * 109.47194 * 240.00255 * 16 14 12 20 20 C 1.54031 * 113.82183 * 111.48821 * 7 6 5 21 21 O 1.44573 * 85.38581 * 136.86155 * 20 7 6 22 22 C 1.44177 * 93.32596 * 335.80811 * 21 20 7 23 23 C 1.38270 * 120.11193 * 0.24667 * 6 5 4 24 24 C 1.38152 * 120.05181 * 359.45333 * 23 6 5 25 25 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46833 * 300.00113 * 1 2 3 27 27 H 1.09001 * 109.47137 * 59.99620 * 1 2 3 28 28 H 1.08004 * 120.02352 * 0.04727 * 4 3 2 29 29 H 1.08005 * 119.97133 * 179.97438 * 5 4 3 30 30 H 0.97006 * 120.00004 * 1.35642 * 8 7 6 31 31 H 0.97001 * 119.99875 * 179.97438 * 15 14 12 32 32 H 1.08998 * 113.86433 * 251.07680 * 20 7 6 33 33 H 1.09007 * 113.86001 * 22.77973 * 20 7 6 34 34 H 1.09003 * 113.86241 * 270.03857 * 22 21 20 35 35 H 1.08994 * 113.86860 * 138.33834 * 22 21 20 36 36 H 1.07993 * 119.97502 * 179.70716 * 23 6 5 37 37 H 1.07999 * 120.02591 * 180.25246 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6758 0.0017 7 6 3.9861 5.0185 0.0028 8 7 5.3728 4.9540 0.4709 9 16 6.2772 6.3374 0.5739 10 8 5.4550 7.3081 1.2069 11 8 7.5486 5.9492 1.0761 12 6 6.5455 6.9089 -1.0710 13 1 6.2137 6.3150 -1.9099 14 6 7.1790 8.1143 -1.2874 15 7 7.5825 8.8377 -0.2659 16 14 7.4627 8.7206 -3.0313 17 1 6.9185 7.7299 -3.9945 18 1 6.7765 10.0239 -3.2201 19 1 8.9194 8.8896 -3.2658 20 6 3.8080 5.8086 -1.3074 21 8 3.5802 6.9508 -0.4508 22 6 3.1585 6.1377 0.6626 23 6 1.9211 3.6048 0.0079 24 6 1.2915 2.3751 0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0209 0.3799 -0.0017 29 1 5.1346 2.5750 0.0000 30 1 5.7613 4.1009 0.7204 31 1 8.0285 9.6856 -0.4181 32 1 4.7155 5.8786 -1.9070 33 1 2.9340 5.5106 -1.8866 34 1 2.0868 5.9400 0.6833 35 1 3.5514 6.4684 1.6240 36 1 1.3343 4.5114 0.0140 37 1 0.2129 2.3202 0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:27 Heat of formation + Delta-G solvation = -116.189629 kcal Electronic energy + Delta-G solvation = -24704.823435 eV Core-core repulsion = 20961.266073 eV Total energy + Delta-G solvation = -3743.557361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04395 -40.71948 -38.28230 -37.23061 -36.03447 -35.23406 -34.83158 -32.31129 -31.19358 -28.89747 -28.57388 -27.38378 -27.12913 -24.04069 -22.94473 -21.23515 -20.75061 -19.59460 -19.07613 -18.57101 -17.51034 -17.18375 -16.96276 -16.72313 -16.56904 -16.35029 -15.88880 -15.79781 -15.46995 -15.34335 -14.67466 -14.36331 -14.12248 -13.94253 -13.80242 -13.58537 -13.23695 -12.99308 -12.72895 -12.65278 -12.58949 -12.40742 -12.23740 -12.06553 -11.83552 -11.73312 -11.27120 -11.17451 -10.83298 -10.45396 -10.38958 -9.97541 -9.07562 -8.67902 -7.34692 0.28941 0.36607 0.42939 1.35251 1.36429 1.52240 2.23756 2.39310 2.64867 2.66818 2.70338 2.96284 3.46755 3.60220 3.81395 3.87877 3.96219 4.12895 4.29309 4.33278 4.44916 4.45713 4.46703 4.58806 4.66531 4.74792 4.79171 4.87858 5.03898 5.06069 5.14078 5.26037 5.36212 5.39825 5.45034 5.64074 5.74792 5.98370 6.28579 6.46199 6.87477 8.29359 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.004071 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.226311 B = 6875.912888 C = 7034.209488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.120 3.880 4 C -0.156 4.156 5 C -0.079 4.079 6 C -0.124 4.124 7 C 0.174 3.826 8 N -1.102 6.102 9 S 2.717 3.283 10 O -1.013 7.013 11 O -1.054 7.054 12 C -1.020 5.020 13 H 0.124 0.876 14 C 0.075 3.925 15 N -0.895 5.895 16 Si 0.984 3.016 17 H -0.244 1.244 18 H -0.265 1.265 19 H -0.263 1.263 20 C -0.001 4.001 21 O -0.381 6.381 22 C 0.014 3.986 23 C -0.070 4.070 24 C -0.198 4.198 25 H 0.117 0.883 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.415 0.585 31 H 0.295 0.705 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.190 -15.752 -3.485 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.175 4.175 5 C -0.097 4.097 6 C -0.126 4.126 7 C 0.083 3.917 8 N -0.859 5.859 9 S 2.819 3.181 10 O -1.002 7.002 11 O -1.045 7.045 12 C -1.154 5.154 13 H 0.142 0.858 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.803 3.197 17 H -0.167 1.167 18 H -0.190 1.190 19 H -0.187 1.187 20 C -0.079 4.079 21 O -0.299 6.299 22 C -0.064 4.064 23 C -0.088 4.088 24 C -0.217 4.217 25 H 0.135 0.865 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.167 0.833 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.762 -14.975 -2.622 21.899 hybrid contribution 0.558 0.195 -0.836 1.024 sum -15.204 -14.780 -3.458 21.484 Atomic orbital electron populations 1.23366 0.76369 1.05578 1.02447 1.86055 1.23550 1.26646 1.88538 1.19218 0.92449 0.84897 0.96000 1.20549 0.92076 0.98473 1.06372 1.20916 1.00493 0.91143 0.97176 1.19508 0.94468 0.92443 1.06151 1.21569 0.81671 0.94020 0.94470 1.55406 1.21312 1.26088 1.83052 1.00049 0.70685 0.70749 0.76659 1.93321 1.68996 1.59863 1.78053 1.93318 1.44150 1.83721 1.83262 1.30946 1.51449 1.15700 1.17300 0.85794 1.25869 0.89454 0.94202 1.04222 1.70005 1.34039 1.14197 1.34474 0.85192 0.78997 0.79089 0.76433 1.16674 1.18969 1.18728 1.25363 1.04201 0.83667 0.94653 1.90013 1.87111 1.27557 1.25247 1.25048 1.00257 0.87591 0.93481 1.21021 0.92628 0.98714 0.96435 1.21445 1.01375 0.91113 1.07739 0.86462 0.91589 0.91477 0.84046 0.84977 0.74918 0.89549 0.87890 0.86138 0.85920 0.89611 0.83332 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.12 10.50 -92.42 -0.97 -7.09 16 3 C 0.12 2.44 6.69 22.51 0.15 2.59 16 4 C -0.16 -3.45 9.99 22.37 0.22 -3.22 16 5 C -0.08 -1.96 9.23 22.25 0.21 -1.75 16 6 C -0.12 -3.24 5.26 -19.85 -0.10 -3.35 16 7 C 0.17 5.87 1.76 3.56 0.01 5.87 16 8 N -1.10 -43.87 5.79 -183.40 -1.06 -44.93 16 9 S 2.72 147.02 4.60 -56.49 -0.26 146.76 16 10 O -1.01 -59.99 13.69 -119.51 -1.64 -61.62 16 11 O -1.05 -63.97 18.02 -128.00 -2.31 -66.27 16 12 C -1.02 -55.74 7.83 67.74 0.53 -55.21 16 13 H 0.12 6.03 5.50 -2.91 -0.02 6.01 16 14 C 0.07 4.20 5.46 84.66 0.46 4.67 16 15 N -0.90 -54.34 13.08 21.45 0.28 -54.06 16 16 Si 0.98 42.09 29.54 68.60 2.03 44.12 16 17 H -0.24 -9.56 7.11 99.48 0.71 -8.85 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 20 C 0.00 -0.04 7.67 72.29 0.55 0.52 16 21 O -0.38 -16.51 10.17 -128.43 -1.31 -17.82 16 22 C 0.01 0.51 7.44 72.30 0.54 1.05 16 23 C -0.07 -1.44 9.09 22.26 0.20 -1.23 16 24 C -0.20 -3.51 9.04 22.37 0.20 -3.30 16 25 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.50 7.66 -2.39 -0.02 0.49 16 27 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 28 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.13 3.18 6.37 -2.91 -0.02 3.16 16 30 H 0.42 14.23 6.69 -96.74 -0.65 13.58 16 31 H 0.29 16.17 8.31 -92.71 -0.77 15.40 16 32 H 0.10 3.92 4.75 -2.39 -0.01 3.91 16 33 H 0.12 3.13 8.04 -2.38 -0.02 3.11 16 34 H 0.12 3.13 5.91 -2.39 -0.01 3.11 16 35 H 0.09 3.55 6.52 -2.39 -0.02 3.54 16 36 H 0.15 2.47 6.14 -2.91 -0.02 2.45 16 37 H 0.16 1.80 6.30 -2.91 -0.02 1.78 16 Total: -1.00 -81.10 312.01 -0.66 -81.76 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.49 Total: 31.25 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 4.08 Total: -52.10 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -0.78 Total: -98.99 kcal Atomic # 8 Polarization: -146.58 SS G_CDS: -6.22 Total: -152.80 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 147.02 SS G_CDS: -0.26 Total: 146.76 kcal Total: -81.10 -0.66 -81.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.433 kcal (2) G-P(sol) polarization free energy of solvation -81.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds