Wall clock time and date at job start Fri Apr 10 2020 14:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34709 * 116.99971 * 2 1 4 4 O 1.21471 * 120.00215 * 0.02562 * 3 2 1 5 5 C 1.47723 * 120.00179 * 179.97438 * 3 2 1 6 6 C 1.39633 * 120.15316 * 179.97438 * 5 3 2 7 7 C 1.37938 * 119.84852 * 180.30600 * 6 5 3 8 8 C 1.38372 * 120.14963 * 359.44003 * 7 6 5 9 9 C 1.50708 * 119.84796 * 180.28044 * 8 7 6 10 10 C 1.52998 * 109.47208 * 270.27845 * 9 8 7 11 11 N 1.46500 * 109.46970 * 179.97438 * 10 9 8 12 12 S 1.65596 * 120.00101 * 164.99992 * 11 10 9 13 13 O 1.42101 * 106.40531 * 178.54101 * 12 11 10 14 14 O 1.42102 * 106.40030 * 311.46309 * 12 11 10 15 15 C 1.76206 * 107.21681 * 65.00034 * 12 11 10 16 16 H 1.07994 * 119.99868 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99910 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00078 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00081 * 179.97438 * 17 15 12 20 20 H 1.48510 * 109.46859 * 60.00377 * 19 17 15 21 21 H 1.48502 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47350 * 300.00493 * 19 17 15 23 23 C 1.38363 * 120.30454 * 0.56443 * 8 7 6 24 24 C 1.37948 * 120.14806 * 359.71588 * 23 8 7 25 25 H 1.09003 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47492 * 299.99973 * 1 2 3 27 27 H 1.09004 * 109.47185 * 60.00164 * 1 2 3 28 28 H 1.08002 * 120.07109 * 0.02562 * 6 5 3 29 29 H 1.07998 * 119.92553 * 179.70097 * 7 6 5 30 30 H 1.09000 * 109.46665 * 30.28514 * 9 8 7 31 31 H 1.08996 * 109.46685 * 150.27641 * 9 8 7 32 32 H 1.09002 * 109.47124 * 300.00037 * 10 9 8 33 33 H 1.09000 * 109.46774 * 60.00463 * 10 9 8 34 34 H 0.97001 * 119.99808 * 344.99999 * 11 10 9 35 35 H 0.97002 * 120.00089 * 179.97438 * 18 17 15 36 36 H 1.07997 * 119.93022 * 179.74159 * 23 8 7 37 37 H 1.08004 * 120.07515 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2776 0.0006 6 6 4.1759 2.5201 0.0000 7 6 5.5538 2.5850 -0.0058 8 6 6.3043 1.4226 0.0005 9 6 7.8093 1.5015 0.0005 10 6 8.3186 1.5275 -1.4420 11 7 9.7816 1.6048 -1.4420 12 16 10.6281 1.2770 -2.8270 13 8 12.0006 1.4698 -2.5136 14 8 10.1108 0.0542 -3.3334 15 6 10.2067 2.5202 -4.0024 16 1 9.5080 3.2998 -3.7368 17 6 10.7697 2.4984 -5.2607 18 7 11.6209 1.5494 -5.5839 19 14 10.3224 3.8160 -6.5071 20 1 10.6933 5.1505 -5.9712 21 1 11.0572 3.5690 -7.7738 22 1 8.8610 3.7757 -6.7672 23 6 5.6795 0.1881 0.0010 24 6 4.3023 0.1086 0.0011 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.5912 3.4282 -0.0004 29 1 6.0479 3.5453 -0.0111 30 1 8.1255 2.4094 0.5140 31 1 8.2187 0.6320 0.5148 32 1 8.0024 0.6195 -1.9554 33 1 7.9092 2.3971 -1.9562 34 1 10.2544 1.8480 -0.6307 35 1 12.0167 1.5338 -6.4694 36 1 6.2712 -0.7154 0.0018 37 1 3.8158 -0.8557 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:36 Heat of formation + Delta-G solvation = -161.612106 kcal Electronic energy + Delta-G solvation = -22733.900393 eV Core-core repulsion = 18988.373366 eV Total energy + Delta-G solvation = -3745.527028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78801 -39.25229 -36.70635 -35.62701 -35.09815 -33.94660 -33.09778 -32.40908 -31.22496 -28.91386 -27.44319 -26.12626 -24.06584 -22.88778 -22.06505 -20.73195 -18.98626 -18.27028 -17.53052 -17.28682 -16.61068 -16.21076 -15.68916 -15.42688 -15.31393 -14.88642 -14.66572 -14.22901 -13.82066 -13.76741 -13.61894 -13.50902 -13.29672 -12.80103 -12.44743 -12.02480 -11.89886 -11.72924 -11.54637 -11.25498 -11.19839 -11.10648 -11.02965 -10.78317 -10.61877 -10.35835 -10.28569 -10.18793 -9.23409 -9.19868 -9.04146 -8.98881 -8.49928 -6.69691 -5.31616 0.47088 1.18795 2.27056 2.37859 2.41410 3.08979 3.13534 3.19082 3.57237 4.06371 4.39646 4.56388 4.63332 4.65424 4.76204 4.79480 4.86732 4.94325 5.06546 5.17247 5.19700 5.27064 5.38889 5.53335 5.76448 5.77912 5.82915 5.95082 6.06050 6.08718 6.18701 6.19242 6.43235 6.50862 6.65877 6.81654 7.32444 7.47338 7.88070 7.97441 8.89522 10.24492 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.018745 B = 0.002832 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.382248 B = 9885.350275 C =10581.483172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.511 3.489 4 O -0.510 6.510 5 C -0.139 4.139 6 C -0.051 4.051 7 C -0.127 4.127 8 C -0.035 4.035 9 C -0.097 4.097 10 C 0.133 3.867 11 N -1.138 6.138 12 S 2.716 3.284 13 O -1.007 7.007 14 O -1.007 7.007 15 C -1.021 5.021 16 H 0.101 0.899 17 C 0.133 3.867 18 N -0.845 5.845 19 Si 0.920 3.080 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.128 4.128 24 C -0.058 4.058 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.402 0.598 35 H 0.291 0.709 36 H 0.136 0.864 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.350 -1.069 12.434 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.357 3.643 4 O -0.399 6.399 5 C -0.140 4.140 6 C -0.070 4.070 7 C -0.145 4.145 8 C -0.036 4.036 9 C -0.135 4.135 10 C 0.005 3.995 11 N -0.893 5.893 12 S 2.816 3.184 13 O -0.997 6.997 14 O -0.997 6.997 15 C -1.154 5.154 16 H 0.119 0.881 17 C -0.085 4.085 18 N -0.475 5.475 19 Si 0.744 3.256 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.146 4.146 24 C -0.077 4.077 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.233 0.767 35 H 0.102 0.898 36 H 0.154 0.846 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.973 -1.687 12.029 20.872 hybrid contribution -0.625 1.409 -0.561 1.641 sum -17.598 -0.278 11.468 21.007 Atomic orbital electron populations 1.23284 0.75968 1.03800 1.02640 1.86548 1.23570 1.32721 1.84338 1.21291 0.89254 0.81360 0.72428 1.90826 1.66880 1.36056 1.46152 1.19053 0.88657 0.95263 1.11070 1.21234 0.94597 0.96587 0.94548 1.21089 0.93013 0.98796 1.01574 1.20209 0.96034 0.93181 0.94164 1.20988 0.90137 1.04118 0.98283 1.20994 0.80787 1.02475 0.95213 1.56005 1.14385 1.89241 1.29662 1.00357 0.71737 0.74844 0.71462 1.93376 1.33939 1.87882 1.84510 1.93357 1.80671 1.46762 1.78877 1.30515 1.39864 1.31534 1.13472 0.88070 1.24733 0.90766 0.95175 0.97815 1.69886 1.23989 1.30486 1.23157 0.86214 0.79561 0.81020 0.78836 1.18897 1.20155 1.18870 1.21163 0.94208 0.97964 1.01251 1.21444 0.93836 0.97820 0.94558 0.87923 0.91859 0.91764 0.84579 0.84627 0.89896 0.89764 0.90447 0.91962 0.76749 0.89849 0.84626 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.58 9.82 -40.52 -0.40 -3.97 16 3 C 0.51 6.07 7.90 34.61 0.27 6.35 16 4 O -0.51 -7.14 16.14 -19.24 -0.31 -7.45 16 5 C -0.14 -1.57 5.87 -104.98 -0.62 -2.18 16 6 C -0.05 -0.56 9.60 -39.17 -0.38 -0.93 16 7 C -0.13 -1.31 9.68 -39.64 -0.38 -1.69 16 8 C -0.03 -0.38 5.14 -104.52 -0.54 -0.92 16 9 C -0.10 -1.08 5.48 -27.88 -0.15 -1.23 16 10 C 0.13 2.06 6.20 -4.04 -0.03 2.03 16 11 N -1.14 -20.91 6.00 -10.61 -0.06 -20.98 16 12 S 2.72 69.69 5.02 -107.50 -0.54 69.15 16 13 O -1.01 -28.81 18.02 -57.17 -1.03 -29.84 16 14 O -1.01 -28.63 17.49 -57.17 -1.00 -29.63 16 15 C -1.02 -27.48 9.72 30.60 0.30 -27.18 16 16 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 17 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 18 N -0.85 -24.69 13.19 55.43 0.73 -23.95 16 19 Si 0.92 20.44 29.54 -169.99 -5.02 15.42 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 23 C -0.13 -1.31 9.68 -39.64 -0.38 -1.70 16 24 C -0.06 -0.59 9.62 -39.17 -0.38 -0.97 16 25 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.14 1.38 7.65 -52.49 -0.40 0.98 16 29 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 6.20 8.65 -34.47 -0.30 5.90 16 35 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.14 1.15 7.61 -52.48 -0.40 0.75 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -36.67 344.07 -8.18 -44.84 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.42 Total: 4.73 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -1.31 Total: -23.51 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.67 Total: -44.93 kcal Atomic # 8 Polarization: -68.15 SS G_CDS: -2.74 Total: -70.89 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 69.69 SS G_CDS: -0.54 Total: 69.15 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.67 -8.18 -44.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.767 kcal (2) G-P(sol) polarization free energy of solvation -36.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds