Wall clock time and date at job start Fri Apr 10 2020 14:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34709 * 116.99971 * 2 1 4 4 O 1.21471 * 120.00215 * 0.02562 * 3 2 1 5 5 C 1.47723 * 120.00179 * 179.97438 * 3 2 1 6 6 C 1.39633 * 120.15316 * 179.97438 * 5 3 2 7 7 C 1.37938 * 119.84852 * 180.30600 * 6 5 3 8 8 C 1.38372 * 120.14963 * 359.44003 * 7 6 5 9 9 C 1.50708 * 119.84796 * 180.28044 * 8 7 6 10 10 C 1.52998 * 109.47208 * 270.27845 * 9 8 7 11 11 N 1.46500 * 109.46970 * 179.97438 * 10 9 8 12 12 S 1.65596 * 120.00101 * 164.99992 * 11 10 9 13 13 O 1.42101 * 106.40531 * 178.54101 * 12 11 10 14 14 O 1.42102 * 106.40030 * 311.46309 * 12 11 10 15 15 C 1.76206 * 107.21681 * 65.00034 * 12 11 10 16 16 H 1.07994 * 119.99868 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99910 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00078 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00081 * 179.97438 * 17 15 12 20 20 H 1.48510 * 109.46859 * 60.00377 * 19 17 15 21 21 H 1.48502 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47350 * 300.00493 * 19 17 15 23 23 C 1.38363 * 120.30454 * 0.56443 * 8 7 6 24 24 C 1.37948 * 120.14806 * 359.71588 * 23 8 7 25 25 H 1.09003 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47492 * 299.99973 * 1 2 3 27 27 H 1.09004 * 109.47185 * 60.00164 * 1 2 3 28 28 H 1.08002 * 120.07109 * 0.02562 * 6 5 3 29 29 H 1.07998 * 119.92553 * 179.70097 * 7 6 5 30 30 H 1.09000 * 109.46665 * 30.28514 * 9 8 7 31 31 H 1.08996 * 109.46685 * 150.27641 * 9 8 7 32 32 H 1.09002 * 109.47124 * 300.00037 * 10 9 8 33 33 H 1.09000 * 109.46774 * 60.00463 * 10 9 8 34 34 H 0.97001 * 119.99808 * 344.99999 * 11 10 9 35 35 H 0.97002 * 120.00089 * 179.97438 * 18 17 15 36 36 H 1.07997 * 119.93022 * 179.74159 * 23 8 7 37 37 H 1.08004 * 120.07515 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2776 0.0006 6 6 4.1759 2.5201 0.0000 7 6 5.5538 2.5850 -0.0058 8 6 6.3043 1.4226 0.0005 9 6 7.8093 1.5015 0.0005 10 6 8.3186 1.5275 -1.4420 11 7 9.7816 1.6048 -1.4420 12 16 10.6281 1.2770 -2.8270 13 8 12.0006 1.4698 -2.5136 14 8 10.1108 0.0542 -3.3334 15 6 10.2067 2.5202 -4.0024 16 1 9.5080 3.2998 -3.7368 17 6 10.7697 2.4984 -5.2607 18 7 11.6209 1.5494 -5.5839 19 14 10.3224 3.8160 -6.5071 20 1 10.6933 5.1505 -5.9712 21 1 11.0572 3.5690 -7.7738 22 1 8.8610 3.7757 -6.7672 23 6 5.6795 0.1881 0.0010 24 6 4.3023 0.1086 0.0011 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.5912 3.4282 -0.0004 29 1 6.0479 3.5453 -0.0111 30 1 8.1255 2.4094 0.5140 31 1 8.2187 0.6320 0.5148 32 1 8.0024 0.6195 -1.9554 33 1 7.9092 2.3971 -1.9562 34 1 10.2544 1.8480 -0.6307 35 1 12.0167 1.5338 -6.4694 36 1 6.2712 -0.7154 0.0018 37 1 3.8158 -0.8557 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:36 Heat of formation + Delta-G solvation = -188.581530 kcal Electronic energy + Delta-G solvation = -22735.069875 eV Core-core repulsion = 18988.373366 eV Total energy + Delta-G solvation = -3746.696510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63408 -40.07461 -37.57929 -37.38567 -36.70999 -36.08948 -35.14562 -33.49727 -32.01066 -29.83447 -28.22022 -28.21114 -25.08772 -23.67321 -23.06129 -21.60757 -20.93403 -19.34087 -19.08209 -18.24464 -18.09584 -17.41543 -17.14283 -16.84088 -16.36503 -16.12010 -15.88718 -15.60085 -15.29555 -14.99486 -14.52302 -14.48658 -14.25906 -13.96207 -13.74060 -13.34037 -13.15144 -12.99419 -12.98146 -12.64197 -12.53766 -12.44291 -12.34147 -12.31185 -12.10395 -11.88944 -11.84735 -11.63505 -11.21123 -10.97475 -10.16966 -9.96480 -9.83745 -8.72539 -7.44528 -0.38329 0.40507 0.41171 1.36084 1.37630 1.44049 1.50307 1.67040 2.22650 2.61136 2.74601 3.04070 3.63090 3.75207 3.83293 3.93070 4.01037 4.15836 4.21976 4.28985 4.32163 4.40957 4.48142 4.58926 4.66897 4.69315 4.83310 4.94147 4.99189 5.11655 5.16164 5.25411 5.28442 5.36585 5.40205 5.61185 5.87230 5.93168 6.48140 6.61957 6.82113 8.23379 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.018745 B = 0.002832 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.382248 B = 9885.350275 C =10581.483172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.511 3.489 4 O -0.539 6.539 5 C -0.153 4.153 6 C -0.060 4.060 7 C -0.126 4.126 8 C -0.043 4.043 9 C -0.085 4.085 10 C 0.123 3.877 11 N -1.120 6.120 12 S 2.723 3.277 13 O -1.045 7.045 14 O -1.043 7.043 15 C -1.040 5.040 16 H 0.121 0.879 17 C 0.070 3.930 18 N -0.894 5.894 19 Si 0.987 3.013 20 H -0.251 1.251 21 H -0.266 1.266 22 H -0.251 1.251 23 C -0.132 4.132 24 C -0.057 4.057 25 H 0.135 0.865 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.418 0.582 35 H 0.298 0.702 36 H 0.149 0.851 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.577 -0.200 12.884 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.431 6.431 5 C -0.154 4.154 6 C -0.078 4.078 7 C -0.144 4.144 8 C -0.044 4.044 9 C -0.123 4.123 10 C -0.003 4.003 11 N -0.880 5.880 12 S 2.824 3.176 13 O -1.035 7.035 14 O -1.033 7.033 15 C -1.173 5.173 16 H 0.139 0.861 17 C -0.143 4.143 18 N -0.526 5.526 19 Si 0.805 3.195 20 H -0.175 1.175 21 H -0.191 1.191 22 H -0.175 1.175 23 C -0.150 4.150 24 C -0.075 4.075 25 H 0.153 0.847 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.156 0.844 29 H 0.171 0.829 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.252 0.748 35 H 0.108 0.892 36 H 0.167 0.833 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.195 -0.841 12.506 22.095 hybrid contribution -0.335 1.076 -0.611 1.282 sum -18.530 0.235 11.895 22.021 Atomic orbital electron populations 1.23596 0.74258 1.05937 1.02633 1.86539 1.25288 1.31719 1.83789 1.21463 0.89564 0.81454 0.71706 1.90805 1.67516 1.36992 1.47741 1.19220 0.88586 0.95958 1.11634 1.21356 0.95014 0.96674 0.94783 1.21291 0.92772 0.99518 1.00807 1.20237 0.95746 0.93589 0.94829 1.20889 0.90258 1.05916 0.95279 1.21248 0.78583 1.02033 0.98453 1.55303 1.15660 1.88871 1.28152 0.99757 0.71196 0.74319 0.72350 1.93315 1.36673 1.88172 1.85354 1.93305 1.81089 1.48553 1.80350 1.30911 1.40108 1.32165 1.14146 0.86117 1.25969 0.90353 0.97583 1.00350 1.69985 1.25577 1.32771 1.24243 0.85203 0.79976 0.78030 0.76243 1.17453 1.19068 1.17494 1.21395 0.94437 0.98461 1.00729 1.21610 0.93822 0.98157 0.93903 0.84742 0.91703 0.92003 0.84410 0.82888 0.87719 0.88563 0.91979 0.91444 0.74754 0.89208 0.83321 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.79 9.82 -56.19 -0.55 -7.34 16 3 C 0.51 11.86 7.90 70.33 0.56 12.41 16 4 O -0.54 -15.04 16.14 19.93 0.32 -14.72 16 5 C -0.15 -3.29 5.87 -20.10 -0.12 -3.41 16 6 C -0.06 -1.23 9.60 22.54 0.22 -1.02 16 7 C -0.13 -2.35 9.68 22.23 0.22 -2.13 16 8 C -0.04 -0.83 5.14 -19.80 -0.10 -0.94 16 9 C -0.08 -1.66 5.48 29.85 0.16 -1.50 16 10 C 0.12 3.62 6.20 86.38 0.54 4.15 16 11 N -1.12 -39.84 6.00 -187.49 -1.12 -40.97 16 12 S 2.72 140.68 5.02 -56.49 -0.28 140.39 16 13 O -1.04 -60.74 18.02 -128.00 -2.31 -63.05 16 14 O -1.04 -60.43 17.49 -128.00 -2.24 -62.67 16 15 C -1.04 -55.55 9.72 67.73 0.66 -54.89 16 16 H 0.12 5.73 7.81 -2.91 -0.02 5.71 16 17 C 0.07 3.85 5.46 84.65 0.46 4.32 16 18 N -0.89 -52.90 13.19 21.45 0.28 -52.62 16 19 Si 0.99 40.78 29.54 68.60 2.03 42.81 16 20 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 23 C -0.13 -2.46 9.68 22.23 0.22 -2.25 16 24 C -0.06 -1.06 9.62 22.54 0.22 -0.84 16 25 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.14 2.71 7.65 -2.91 -0.02 2.69 16 29 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.10 1.63 8.08 -2.39 -0.02 1.61 16 31 H 0.10 1.68 8.08 -2.39 -0.02 1.66 16 32 H 0.06 2.02 7.75 -2.39 -0.02 2.01 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.42 12.19 8.65 -96.75 -0.84 11.35 16 35 H 0.30 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.15 2.27 7.61 -2.91 -0.02 2.25 16 Total: -1.00 -79.97 344.07 0.61 -79.36 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.26 Total: 23.33 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 4.22 Total: -44.53 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -0.84 Total: -93.58 kcal Atomic # 8 Polarization: -143.00 SS G_CDS: -4.77 Total: -147.78 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 140.68 SS G_CDS: -0.28 Total: 140.39 kcal Total: -79.97 0.61 -79.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.222 kcal (2) G-P(sol) polarization free energy of solvation -79.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds