Wall clock time and date at job start Fri Apr 10 2020 14:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00335 * 2 1 4 4 C 1.38754 * 120.05246 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94354 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05612 * 359.74718 * 5 4 3 7 7 C 1.38244 * 120.11150 * 0.50841 * 6 5 4 8 8 C 1.50696 * 119.97346 * 179.76636 * 7 6 5 9 9 N 1.46504 * 112.99952 * 159.39311 * 8 7 6 10 10 S 1.65598 * 120.00022 * 173.08460 * 9 8 7 11 11 O 1.42095 * 106.40179 * 180.54620 * 10 9 8 12 12 O 1.42104 * 106.40059 * 313.46385 * 10 9 8 13 13 C 1.76202 * 107.22098 * 67.00380 * 10 9 8 14 14 H 1.07996 * 119.99566 * 4.37289 * 13 10 9 15 15 C 1.37871 * 119.99792 * 184.37185 * 13 10 9 16 16 N 1.31517 * 120.00254 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99835 * 180.02562 * 15 13 10 18 18 H 1.48508 * 109.47041 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47359 * 119.99456 * 17 15 13 20 20 H 1.48496 * 109.47380 * 239.99821 * 17 15 13 21 21 C 1.54034 * 113.92862 * 291.32589 * 8 7 6 22 22 O 1.44177 * 85.51605 * 136.81761 * 21 8 7 23 23 C 1.44180 * 93.34121 * 335.80632 * 22 21 8 24 24 C 1.38173 * 120.05411 * 359.49345 * 7 6 5 25 25 H 1.08998 * 109.47092 * 59.99767 * 1 2 3 26 26 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46758 * 299.99937 * 1 2 3 28 28 H 1.08007 * 120.02867 * 359.95845 * 4 3 2 29 29 H 1.08005 * 119.96731 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.94619 * 180.28055 * 6 5 4 31 31 H 0.96998 * 119.99492 * 353.35634 * 9 8 7 32 32 H 0.97001 * 119.99467 * 180.02562 * 16 15 13 33 33 H 1.09001 * 113.86070 * 250.96409 * 21 8 7 34 34 H 1.08996 * 113.86291 * 22.66410 * 21 8 7 35 35 H 1.08997 * 113.86304 * 270.04725 * 23 22 21 36 36 H 1.08994 * 113.97875 * 138.35496 * 23 22 21 37 37 H 1.07998 * 120.02895 * 180.23273 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6758 0.0064 7 6 4.0561 2.5171 0.0005 8 6 5.5609 2.5982 0.0010 9 7 6.2003 1.3661 0.4694 10 16 7.8456 1.2013 0.3794 11 8 8.1482 -0.0891 0.8917 12 8 8.2210 1.6281 -0.9230 13 6 8.5483 2.3608 1.5048 14 1 7.9068 2.9545 2.1391 15 6 9.9171 2.5101 1.5756 16 7 10.6983 1.7867 0.8035 17 14 10.6621 3.7388 2.7692 18 1 9.5768 4.4215 3.5185 19 1 11.5503 3.0267 3.7227 20 1 11.4513 4.7455 2.0150 21 6 6.1572 3.1497 -1.3078 22 8 7.0292 3.9176 -0.4542 23 6 6.1147 3.8757 0.6597 24 6 3.4312 1.2848 -0.0001 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3204 0.0003 29 1 1.3340 4.5114 0.0019 30 1 3.7923 4.6381 0.0113 31 1 5.6596 0.6454 0.8285 32 1 11.6614 1.8915 0.8537 33 1 6.6745 2.4003 -1.9069 34 1 5.4618 3.7562 -1.8880 35 1 5.4064 4.7039 0.6802 36 1 6.5963 3.7024 1.6220 37 1 4.0207 0.3799 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:34 Heat of formation + Delta-G solvation = -86.802408 kcal Electronic energy + Delta-G solvation = -24825.219744 eV Core-core repulsion = 21082.936709 eV Total energy + Delta-G solvation = -3742.283036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83676 -39.73367 -37.32253 -35.09191 -33.89545 -33.70300 -32.93982 -30.78695 -30.56495 -27.47059 -27.00421 -26.57652 -25.51561 -22.58031 -22.41493 -19.86652 -18.94584 -18.21790 -17.36489 -16.64930 -16.26730 -15.95365 -15.89500 -15.42315 -15.24902 -15.15715 -14.67522 -14.10310 -13.91835 -13.71591 -13.56815 -13.37527 -12.93525 -12.69601 -12.34839 -11.96367 -11.79442 -11.66910 -11.20963 -11.15255 -11.05193 -10.93116 -10.58178 -10.45824 -10.21933 -10.11615 -9.69755 -9.19785 -9.13750 -9.00444 -8.73533 -8.52724 -8.27566 -6.59484 -5.16622 1.19349 1.36553 2.33660 3.10852 3.13247 3.20843 3.26692 3.62618 4.07173 4.16164 4.55792 4.61950 4.67081 4.77591 4.83077 4.90666 4.91625 4.98873 5.18558 5.23090 5.38772 5.47026 5.56051 5.66531 5.82297 5.95593 6.07044 6.19964 6.28980 6.32296 6.40338 6.48954 6.60613 6.73396 6.84290 6.87455 7.27432 7.44347 7.82930 8.05516 9.00685 10.35616 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.004475 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.314050 B = 6256.105704 C = 6741.426479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.213 4.213 5 C -0.078 4.078 6 C -0.149 4.149 7 C -0.033 4.033 8 C 0.164 3.836 9 N -1.113 6.113 10 S 2.712 3.288 11 O -1.011 7.011 12 O -0.987 6.987 13 C -1.002 5.002 14 H 0.104 0.896 15 C 0.137 3.863 16 N -0.847 5.847 17 Si 0.918 3.082 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.272 1.272 21 C 0.021 3.979 22 O -0.337 6.337 23 C 0.004 3.996 24 C -0.141 4.141 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.405 0.595 32 H 0.288 0.712 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.663 3.446 -0.835 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.083 3.917 4 C -0.231 4.231 5 C -0.096 4.096 6 C -0.168 4.168 7 C -0.035 4.035 8 C 0.072 3.928 9 N -0.865 5.865 10 S 2.813 3.187 11 O -1.001 7.001 12 O -0.977 6.977 13 C -1.136 5.136 14 H 0.121 0.879 15 C -0.081 4.081 16 N -0.477 5.477 17 Si 0.743 3.257 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.197 1.197 21 C -0.058 4.058 22 O -0.254 6.254 23 C -0.075 4.075 24 C -0.160 4.160 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.237 0.763 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.578 2.795 -1.591 18.855 hybrid contribution -0.410 0.850 1.288 1.597 sum -18.988 3.644 -0.303 19.337 Atomic orbital electron populations 1.23036 0.78578 1.03855 1.01210 1.86097 1.21213 1.26973 1.88739 1.18978 0.92133 0.84168 0.96470 1.21205 0.99819 0.92454 1.09650 1.20872 0.94285 0.96939 0.97479 1.20985 0.93643 0.98125 1.04020 1.19648 0.94279 0.92668 0.96875 1.21737 0.88278 0.86951 0.95847 1.56024 1.28621 1.22416 1.79449 1.00570 0.68771 0.74239 0.75150 1.93383 1.81411 1.43116 1.82219 1.93317 1.79802 1.83353 1.41249 1.30539 1.01215 1.41687 1.40131 0.87851 1.24657 0.95799 0.93904 0.93708 1.69905 1.06720 1.36362 1.34721 0.86172 0.79191 0.80283 0.80067 1.18739 1.19913 1.19706 1.24962 0.91932 0.94965 0.93944 1.89997 1.35554 1.76240 1.23623 1.25093 0.92164 0.94762 0.95462 1.20303 0.91240 0.98719 1.05703 0.92736 0.88317 0.92730 0.85634 0.85615 0.85132 0.76259 0.90176 0.85394 0.90458 0.89880 0.86683 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.80 10.50 -19.44 -0.20 -4.01 16 3 C 0.13 1.63 6.69 -39.22 -0.26 1.36 16 4 C -0.21 -2.24 9.04 -39.43 -0.36 -2.60 16 5 C -0.08 -0.80 10.04 -39.61 -0.40 -1.19 16 6 C -0.15 -1.79 9.10 -39.56 -0.36 -2.15 16 7 C -0.03 -0.48 5.27 -104.65 -0.55 -1.03 16 8 C 0.16 2.89 1.77 -131.89 -0.23 2.65 16 9 N -1.11 -22.42 5.69 -5.84 -0.03 -22.45 16 10 S 2.71 71.91 4.58 -107.50 -0.49 71.41 16 11 O -1.01 -29.89 18.02 -57.17 -1.03 -30.92 16 12 O -0.99 -28.13 13.73 -65.38 -0.90 -29.03 16 13 C -1.00 -27.35 7.79 30.60 0.24 -27.11 16 14 H 0.10 2.56 5.32 -52.49 -0.28 2.28 16 15 C 0.14 3.83 5.46 -17.82 -0.10 3.74 16 16 N -0.85 -25.15 13.12 55.43 0.73 -24.42 16 17 Si 0.92 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.02 0.38 7.59 37.61 0.29 0.67 16 22 O -0.34 -7.29 10.16 -54.73 -0.56 -7.84 16 23 C 0.00 0.07 7.49 37.61 0.28 0.35 16 24 C -0.14 -2.03 9.13 -39.43 -0.36 -2.39 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.13 0.99 6.30 -52.48 -0.33 0.66 16 29 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 30 H 0.13 1.37 6.14 -52.49 -0.32 1.04 16 31 H 0.40 7.17 6.91 -34.47 -0.24 6.94 16 32 H 0.29 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.13 2.68 5.98 -51.93 -0.31 2.37 16 34 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 35 H 0.08 1.13 5.91 -51.93 -0.31 0.82 16 36 H 0.12 2.17 5.20 -51.93 -0.27 1.90 16 37 H 0.13 1.96 6.52 -52.49 -0.34 1.61 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -36.29 311.97 -7.22 -43.51 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -3.59 Total: 9.62 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: -0.82 Total: -26.50 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.69 Total: -46.87 kcal Atomic # 8 Polarization: -69.11 SS G_CDS: -2.69 Total: -71.80 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 71.91 SS G_CDS: -0.49 Total: 71.41 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.29 -7.22 -43.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.294 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds