Wall clock time and date at job start Fri Apr 10 2020 14:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00335 * 2 1 4 4 C 1.38754 * 120.05246 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94354 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05612 * 359.74718 * 5 4 3 7 7 C 1.38244 * 120.11150 * 0.50841 * 6 5 4 8 8 C 1.50696 * 119.97346 * 179.76636 * 7 6 5 9 9 N 1.46504 * 112.99952 * 159.39311 * 8 7 6 10 10 S 1.65598 * 120.00022 * 173.08460 * 9 8 7 11 11 O 1.42095 * 106.40179 * 180.54620 * 10 9 8 12 12 O 1.42104 * 106.40059 * 313.46385 * 10 9 8 13 13 C 1.76202 * 107.22098 * 67.00380 * 10 9 8 14 14 H 1.07996 * 119.99566 * 4.37289 * 13 10 9 15 15 C 1.37871 * 119.99792 * 184.37185 * 13 10 9 16 16 N 1.31517 * 120.00254 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99835 * 180.02562 * 15 13 10 18 18 H 1.48508 * 109.47041 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47359 * 119.99456 * 17 15 13 20 20 H 1.48496 * 109.47380 * 239.99821 * 17 15 13 21 21 C 1.54034 * 113.92862 * 291.32589 * 8 7 6 22 22 O 1.44177 * 85.51605 * 136.81761 * 21 8 7 23 23 C 1.44180 * 93.34121 * 335.80632 * 22 21 8 24 24 C 1.38173 * 120.05411 * 359.49345 * 7 6 5 25 25 H 1.08998 * 109.47092 * 59.99767 * 1 2 3 26 26 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46758 * 299.99937 * 1 2 3 28 28 H 1.08007 * 120.02867 * 359.95845 * 4 3 2 29 29 H 1.08005 * 119.96731 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.94619 * 180.28055 * 6 5 4 31 31 H 0.96998 * 119.99492 * 353.35634 * 9 8 7 32 32 H 0.97001 * 119.99467 * 180.02562 * 16 15 13 33 33 H 1.09001 * 113.86070 * 250.96409 * 21 8 7 34 34 H 1.08996 * 113.86291 * 22.66410 * 21 8 7 35 35 H 1.08997 * 113.86304 * 270.04725 * 23 22 21 36 36 H 1.08994 * 113.97875 * 138.35496 * 23 22 21 37 37 H 1.07998 * 120.02895 * 180.23273 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6758 0.0064 7 6 4.0561 2.5171 0.0005 8 6 5.5609 2.5982 0.0010 9 7 6.2003 1.3661 0.4694 10 16 7.8456 1.2013 0.3794 11 8 8.1482 -0.0891 0.8917 12 8 8.2210 1.6281 -0.9230 13 6 8.5483 2.3608 1.5048 14 1 7.9068 2.9545 2.1391 15 6 9.9171 2.5101 1.5756 16 7 10.6983 1.7867 0.8035 17 14 10.6621 3.7388 2.7692 18 1 9.5768 4.4215 3.5185 19 1 11.5503 3.0267 3.7227 20 1 11.4513 4.7455 2.0150 21 6 6.1572 3.1497 -1.3078 22 8 7.0292 3.9176 -0.4542 23 6 6.1147 3.8757 0.6597 24 6 3.4312 1.2848 -0.0001 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3204 0.0003 29 1 1.3340 4.5114 0.0019 30 1 3.7923 4.6381 0.0113 31 1 5.6596 0.6454 0.8285 32 1 11.6614 1.8915 0.8537 33 1 6.6745 2.4003 -1.9069 34 1 5.4618 3.7562 -1.8880 35 1 5.4064 4.7039 0.6802 36 1 6.5963 3.7024 1.6220 37 1 4.0207 0.3799 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:33 Heat of formation + Delta-G solvation = -116.436208 kcal Electronic energy + Delta-G solvation = -24826.504762 eV Core-core repulsion = 21082.936709 eV Total energy + Delta-G solvation = -3743.568054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10527 -40.73502 -38.26840 -37.28661 -36.09262 -35.31245 -34.92037 -31.89355 -31.52532 -28.55330 -28.33195 -28.04735 -27.17162 -23.62978 -23.37476 -21.22660 -20.78348 -19.56176 -19.19490 -18.20061 -17.36816 -17.07769 -16.98524 -16.81328 -16.64226 -16.49150 -16.21395 -15.85594 -15.80216 -15.26999 -14.61844 -14.43817 -14.20253 -13.96084 -13.79243 -13.24173 -13.13805 -12.98780 -12.83741 -12.63003 -12.59797 -12.45572 -12.25381 -12.01925 -11.94291 -11.80757 -11.27447 -11.18491 -10.86794 -10.55034 -10.39690 -9.79330 -9.16462 -8.67937 -7.34268 0.22964 0.35627 0.47934 1.35448 1.36683 1.52803 2.24081 2.35797 2.61334 2.68059 2.69044 2.93943 3.44511 3.53113 3.78028 3.90440 4.07014 4.16495 4.25666 4.29454 4.38824 4.43207 4.46250 4.55456 4.61990 4.73966 4.75994 4.93264 4.97326 5.02442 5.13294 5.32513 5.39958 5.42867 5.48226 5.59615 5.79919 5.99447 6.21875 6.47355 6.87730 8.29686 Molecular weight = 313.09amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.004475 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.314050 B = 6256.105704 C = 6741.426479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.118 3.882 4 C -0.204 4.204 5 C -0.067 4.067 6 C -0.150 4.150 7 C -0.046 4.046 8 C 0.163 3.837 9 N -1.103 6.103 10 S 2.716 3.284 11 O -1.054 7.054 12 O -1.017 7.017 13 C -1.014 5.014 14 H 0.124 0.876 15 C 0.074 3.926 16 N -0.898 5.898 17 Si 0.986 3.014 18 H -0.244 1.244 19 H -0.263 1.263 20 H -0.264 1.264 21 C 0.015 3.985 22 O -0.379 6.379 23 C 0.004 3.996 24 C -0.168 4.168 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.157 0.843 29 H 0.165 0.835 30 H 0.150 0.850 31 H 0.414 0.586 32 H 0.295 0.705 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.808 6.130 0.253 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.073 3.927 4 C -0.222 4.222 5 C -0.085 4.085 6 C -0.168 4.168 7 C -0.047 4.047 8 C 0.073 3.927 9 N -0.859 5.859 10 S 2.818 3.182 11 O -1.044 7.044 12 O -1.006 7.006 13 C -1.148 5.148 14 H 0.142 0.858 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.805 3.195 18 H -0.166 1.166 19 H -0.187 1.187 20 H -0.189 1.189 21 C -0.063 4.063 22 O -0.298 6.298 23 C -0.074 4.074 24 C -0.187 4.187 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.087 0.913 28 H 0.175 0.825 29 H 0.182 0.818 30 H 0.168 0.832 31 H 0.250 0.750 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.117 0.883 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.756 5.453 -0.510 22.435 hybrid contribution 0.372 -0.036 0.892 0.967 sum -21.384 5.417 0.382 22.062 Atomic orbital electron populations 1.23361 0.76187 1.05491 1.02552 1.86068 1.23761 1.27092 1.88697 1.19077 0.91698 0.85362 0.96583 1.21599 1.01346 0.91643 1.07604 1.21307 0.93677 0.98239 0.95242 1.21211 0.94521 0.97665 1.03394 1.19371 0.91988 0.93899 0.99484 1.21764 0.90493 0.85449 0.95038 1.55392 1.26696 1.24289 1.79555 1.00069 0.70027 0.73434 0.74672 1.93315 1.83171 1.45282 1.82680 1.93290 1.81370 1.83441 1.42533 1.30876 1.01993 1.41611 1.40367 0.85800 1.25896 0.96445 0.95925 0.95559 1.70011 1.07473 1.38549 1.36952 0.85158 0.78898 0.77675 0.77734 1.16636 1.18746 1.18912 1.25054 0.91973 0.94959 0.94296 1.89941 1.37842 1.76649 1.25330 1.25312 0.92087 0.96294 0.93713 1.20283 0.92499 0.98220 1.07736 0.91275 0.86810 0.91303 0.82522 0.81751 0.83246 0.75047 0.89539 0.88777 0.86255 0.85056 0.88285 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.78 10.50 -92.46 -0.97 -8.75 16 3 C 0.12 2.80 6.69 22.51 0.15 2.95 16 4 C -0.20 -3.47 9.04 22.37 0.20 -3.26 16 5 C -0.07 -1.04 10.04 22.25 0.22 -0.82 16 6 C -0.15 -3.02 9.10 22.28 0.20 -2.82 16 7 C -0.05 -1.26 5.27 -19.88 -0.10 -1.36 16 8 C 0.16 5.72 1.77 3.55 0.01 5.73 16 9 N -1.10 -46.10 5.69 -183.45 -1.04 -47.14 16 10 S 2.72 150.54 4.58 -56.49 -0.26 150.28 16 11 O -1.05 -65.60 18.02 -128.00 -2.31 -67.91 16 12 O -1.02 -61.10 13.73 -120.15 -1.65 -62.75 16 13 C -1.01 -56.37 7.79 67.73 0.53 -55.84 16 14 H 0.12 6.14 5.32 -2.91 -0.02 6.12 16 15 C 0.07 4.19 5.46 84.65 0.46 4.65 16 16 N -0.90 -55.05 13.12 21.45 0.28 -54.77 16 17 Si 0.99 42.57 29.54 68.60 2.03 44.59 16 18 H -0.24 -9.61 7.11 99.48 0.71 -8.91 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 C 0.02 0.58 7.59 72.27 0.55 1.13 16 22 O -0.38 -16.44 10.16 -130.34 -1.32 -17.76 16 23 C 0.00 0.12 7.49 72.27 0.54 0.66 16 24 C -0.17 -4.80 9.13 22.37 0.20 -4.60 16 25 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 26 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 28 H 0.16 1.65 6.30 -2.91 -0.02 1.63 16 29 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 30 H 0.15 2.38 6.14 -2.91 -0.02 2.37 16 31 H 0.41 15.52 6.91 -96.75 -0.67 14.85 16 32 H 0.29 16.33 8.31 -92.71 -0.77 15.55 16 33 H 0.09 4.15 5.98 -2.39 -0.01 4.14 16 34 H 0.12 3.35 8.04 -2.39 -0.02 3.34 16 35 H 0.13 3.10 5.91 -2.39 -0.01 3.09 16 36 H 0.10 3.64 5.20 -2.39 -0.01 3.63 16 37 H 0.12 3.57 6.52 -2.91 -0.02 3.55 16 Total: -1.00 -83.28 311.97 -0.70 -83.98 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.47 Total: 32.48 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 4.08 Total: -52.25 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -0.76 Total: -101.91 kcal Atomic # 8 Polarization: -150.92 SS G_CDS: -6.25 Total: -157.17 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 150.54 SS G_CDS: -0.26 Total: 150.28 kcal Total: -83.28 -0.70 -83.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.457 kcal (2) G-P(sol) polarization free energy of solvation -83.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds