Wall clock time and date at job start Fri Apr 10 2020 14:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39878 * 125.89956 * 2 1 4 4 C 1.35318 * 107.91807 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.12330 * 179.97438 * 4 3 2 6 6 N 1.34946 * 107.74840 * 0.02562 * 4 3 2 7 7 C 1.46504 * 126.03561 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47152 * 82.44959 * 7 6 4 9 9 H 1.09003 * 110.45991 * 302.89076 * 8 7 6 10 10 C 1.54379 * 110.40908 * 180.47689 * 8 7 6 11 11 C 1.54259 * 105.05735 * 217.36904 * 10 8 7 12 12 C 1.54375 * 105.06276 * 359.97438 * 11 10 8 13 13 N 1.48558 * 110.41002 * 65.30418 * 8 7 6 14 14 C 1.46899 * 110.99947 * 277.81849 * 13 8 7 15 15 C 1.53001 * 109.47098 * 165.29461 * 14 13 8 16 16 H 1.09002 * 109.47499 * 54.99881 * 15 14 13 17 17 C 1.47197 * 109.47061 * 294.99379 * 15 14 13 18 18 N 3.86766 * 82.34106 * 159.34970 * 2 1 3 19 19 C 1.52996 * 109.47140 * 174.99914 * 15 14 13 20 20 C 1.50702 * 109.47140 * 185.00009 * 19 15 14 21 21 H 1.07996 * 120.00305 * 359.97438 * 20 19 15 22 22 C 1.37883 * 119.99842 * 180.02562 * 20 19 15 23 23 N 1.31511 * 120.00083 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99810 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47289 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46952 * 119.99754 * 24 22 20 27 27 H 1.48503 * 109.47284 * 239.99926 * 24 22 20 28 28 N 1.30834 * 125.89929 * 180.30013 * 2 1 3 29 29 H 1.08997 * 109.47442 * 89.99922 * 1 2 3 30 30 H 1.09002 * 109.46982 * 210.00066 * 1 2 3 31 31 H 1.09004 * 109.47071 * 329.99843 * 1 2 3 32 32 H 1.07997 * 126.03578 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.46644 * 270.02304 * 5 4 3 34 34 H 1.09001 * 109.47058 * 30.01985 * 5 4 3 35 35 H 1.08997 * 109.47051 * 150.02545 * 5 4 3 36 36 H 1.09001 * 109.47059 * 322.44601 * 7 6 4 37 37 H 1.09001 * 109.46726 * 202.44945 * 7 6 4 38 38 H 1.09003 * 110.32444 * 336.26278 * 10 8 7 39 39 H 1.08998 * 110.32324 * 98.47295 * 10 8 7 40 40 H 1.09003 * 110.32370 * 118.89843 * 11 10 8 41 41 H 1.09001 * 110.32477 * 240.99954 * 11 10 8 42 42 H 1.08994 * 110.41504 * 265.07539 * 12 11 10 43 43 H 1.09002 * 110.41128 * 142.63349 * 12 11 10 44 44 H 1.08997 * 109.47516 * 45.29233 * 14 13 8 45 45 H 1.09007 * 109.47017 * 285.28915 * 14 13 8 46 46 H 1.09008 * 109.47124 * 304.99595 * 19 15 14 47 47 H 1.08999 * 109.47724 * 64.99681 * 19 15 14 48 48 H 0.96999 * 119.99910 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8351 1.5989 0.0002 6 7 3.6087 -0.6341 0.0004 7 6 4.7899 -1.5008 0.0003 8 6 5.3132 -1.6499 1.4303 9 1 5.5392 -0.6727 1.8571 10 6 6.5667 -2.5507 1.4537 11 6 6.4417 -3.3777 2.7498 12 6 5.1236 -2.9066 3.4008 13 7 4.3214 -2.3665 2.2728 14 6 3.2821 -1.4488 2.7581 15 6 2.1009 -2.2566 3.2997 16 1 2.4551 -2.9532 4.0597 17 6 1.4744 -3.0075 2.1996 18 7 0.9915 -3.5869 1.3518 19 6 1.0738 -1.3061 3.9181 20 6 -0.0295 -2.1073 4.5599 21 1 -0.0012 -3.1864 4.5294 22 6 -1.0756 -1.4625 5.1852 23 7 -1.1104 -0.1483 5.2219 24 14 -2.4436 -2.4555 5.9801 25 1 -2.1712 -3.9044 5.8022 26 1 -2.5072 -2.1388 7.4295 27 1 -3.7396 -2.1129 5.3411 28 7 2.2741 -1.0598 -0.0056 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9923 2.1598 -0.0004 33 1 5.1293 1.8115 -1.0275 34 1 4.6076 2.5331 0.5137 35 1 5.6512 1.0911 0.5142 36 1 5.5649 -1.0587 -0.6260 37 1 4.5209 -2.4814 -0.3923 38 1 6.5766 -3.2084 0.5844 39 1 7.4702 -1.9416 1.4789 40 1 6.3903 -4.4413 2.5168 41 1 7.2849 -3.1759 3.4105 42 1 5.3203 -2.1263 4.1360 43 1 4.6077 -3.7467 3.8657 44 1 2.9438 -0.8163 1.9375 45 1 3.6906 -0.8250 3.5532 46 1 1.5596 -0.6872 4.6727 47 1 0.6544 -0.6682 3.1402 48 1 -1.8461 0.3053 5.6621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071877003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:36:47 Heat of formation + Delta-G solvation = 102.710989 kcal Electronic energy + Delta-G solvation = -28073.131367 eV Core-core repulsion = 24550.676943 eV Total energy + Delta-G solvation = -3522.454424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.25992 -39.07748 -36.16620 -34.05729 -33.64064 -32.54056 -32.01039 -30.34548 -30.28135 -27.71346 -26.82405 -26.38282 -24.57720 -23.07882 -21.63551 -20.94777 -20.59889 -19.88656 -19.03497 -16.72736 -16.47459 -16.39254 -15.77995 -15.54751 -14.73787 -14.55092 -14.43015 -13.87289 -13.63968 -13.50822 -13.12280 -13.00213 -12.81040 -12.72098 -12.59284 -12.48562 -12.30014 -12.09347 -11.85682 -11.78292 -11.61854 -11.54215 -11.37004 -11.17073 -11.02822 -10.98965 -10.81404 -10.62712 -10.47000 -10.41685 -10.06020 -9.92014 -9.39884 -9.11170 -8.71637 -8.40231 -8.35966 -8.10219 -6.01921 -4.04031 2.12842 2.71989 3.13582 3.32567 3.40581 3.46069 3.91738 4.12096 4.18197 4.46680 4.50794 4.56792 4.73687 4.77472 4.83106 5.03956 5.09562 5.12993 5.19756 5.28385 5.36330 5.38557 5.44941 5.49096 5.63384 5.67730 5.69200 5.74616 5.77477 5.83694 5.94275 5.95905 6.04800 6.06001 6.13098 6.15718 6.20148 6.38754 6.54657 6.57927 6.64480 6.99548 7.06276 7.20682 7.30725 7.52531 7.66811 7.94274 8.14482 8.33303 8.92698 9.02212 9.60528 11.09004 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.005079 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.801484 B = 5511.395614 C = 6773.695454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.076 3.924 3 C -0.267 4.267 4 C 0.068 3.932 5 C -0.089 4.089 6 N -0.370 5.370 7 C 0.149 3.851 8 C 0.043 3.957 9 H 0.057 0.943 10 C -0.115 4.115 11 C -0.121 4.121 12 C 0.029 3.971 13 N -0.497 5.497 14 C 0.040 3.960 15 C 0.019 3.981 16 H 0.089 0.911 17 C 0.259 3.741 18 N -0.470 5.470 19 C 0.035 3.965 20 C -0.520 4.520 21 H 0.056 0.944 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.888 3.112 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.283 1.283 28 N -0.261 5.261 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.043 0.957 46 H 0.030 0.970 47 H 0.026 0.974 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.865 3.281 -8.535 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 C -0.296 4.296 4 C -0.058 4.058 5 C -0.147 4.147 6 N -0.152 5.152 7 C 0.027 3.973 8 C -0.067 4.067 9 H 0.074 0.926 10 C -0.153 4.153 11 C -0.159 4.159 12 C -0.099 4.099 13 N -0.221 5.221 14 C -0.089 4.089 15 C -0.003 4.003 16 H 0.107 0.893 17 C -0.058 4.058 18 N -0.147 5.147 19 C -0.003 4.003 20 C -0.558 4.558 21 H 0.074 0.926 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.716 3.284 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 N -0.082 5.082 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.904 0.767 -10.066 19.689 hybrid contribution -0.271 1.370 1.455 2.017 sum 16.634 2.137 -8.612 18.852 Atomic orbital electron populations 1.20168 0.86880 1.04179 1.01980 1.22347 0.97036 0.90653 0.99060 1.21098 0.90961 0.99698 1.17854 1.20972 0.97035 0.84927 1.02876 1.20402 0.93203 0.98350 1.02744 1.48578 1.05659 1.03510 1.57491 1.21643 0.83656 0.95581 0.96458 1.23036 0.92511 0.97010 0.94127 0.92551 1.22249 0.95985 0.97970 0.99117 1.22256 0.97139 1.00412 0.96131 1.23204 0.93379 1.00105 0.93241 1.65386 1.09290 1.31526 1.15921 1.22730 0.91556 0.94250 1.00331 1.18997 0.94426 0.96534 0.90374 0.89323 1.28427 0.91750 0.92551 0.93084 1.80842 1.11168 1.11217 1.11479 1.19112 0.92009 0.93484 0.95734 1.21173 1.06386 0.92998 1.35232 0.92611 1.24929 0.97963 0.94817 0.96158 1.69958 1.32038 1.07148 1.43885 0.86583 0.82219 0.80585 0.78988 1.19712 1.20973 1.20957 1.77682 0.85453 1.21633 1.23419 0.91369 0.90428 0.90406 0.84064 0.90717 0.89852 0.91536 0.89424 0.88003 0.90769 0.91179 0.90988 0.91427 0.93564 0.89728 0.88462 0.93864 0.95215 0.95576 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 10.45 36.00 0.38 -0.87 16 2 C 0.08 1.34 6.73 -82.41 -0.55 0.78 16 3 C -0.27 -4.03 10.62 -40.01 -0.42 -4.45 16 4 C 0.07 0.91 6.47 -82.26 -0.53 0.38 16 5 C -0.09 -0.77 10.01 36.01 0.36 -0.41 16 6 N -0.37 -5.45 2.21 -57.14 -0.13 -5.58 16 7 C 0.15 1.74 5.53 -4.04 -0.02 1.72 16 8 C 0.04 0.49 2.67 -66.07 -0.18 0.31 16 9 H 0.06 0.63 7.32 -51.93 -0.38 0.25 16 10 C -0.11 -0.98 6.55 -25.35 -0.17 -1.15 16 11 C -0.12 -1.13 7.00 -25.35 -0.18 -1.31 16 12 C 0.03 0.35 6.06 -2.17 -0.01 0.34 16 13 N -0.50 -7.22 4.69 -222.12 -1.04 -8.26 16 14 C 0.04 0.70 3.98 -3.82 -0.02 0.69 16 15 C 0.02 0.39 2.30 -93.41 -0.22 0.17 16 16 H 0.09 1.77 7.55 -51.93 -0.39 1.38 16 17 C 0.26 5.90 12.64 -20.80 -0.26 5.64 16 18 N -0.47 -11.36 18.53 42.10 0.78 -10.58 16 19 C 0.04 0.87 4.42 -27.88 -0.12 0.75 16 20 C -0.52 -14.39 8.60 -34.44 -0.30 -14.69 16 21 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 24 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 28 N -0.26 -4.81 9.98 33.67 0.34 -4.47 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.51 7.18 -51.93 -0.37 0.13 16 36 H 0.09 0.73 8.00 -51.93 -0.42 0.32 16 37 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.55 7.69 -51.93 -0.40 0.15 16 43 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 44 H 0.10 1.81 3.26 -51.93 -0.17 1.64 16 45 H 0.04 0.73 7.66 -51.93 -0.40 0.33 16 46 H 0.03 0.76 8.14 -51.92 -0.42 0.33 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -33.02 386.94 -8.80 -41.81 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.95 Total: 0.10 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.34 Total: -10.43 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.68 Total: -54.10 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.02 -8.80 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071877003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.525 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds