Wall clock time and date at job start Fri Apr 10 2020 14:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30841 * 125.89865 * 2 1 4 4 N 1.40081 * 108.20541 * 179.74208 * 3 2 1 5 5 C 1.46504 * 126.03453 * 180.02562 * 4 3 2 6 6 C 1.34948 * 107.92805 * 359.97438 * 4 3 2 7 7 C 1.50701 * 126.12971 * 179.97438 * 6 4 3 8 8 C 1.35312 * 107.74475 * 0.02562 * 6 4 3 9 9 C 1.50703 * 126.04255 * 180.02562 * 8 6 4 10 10 H 1.09004 * 110.32931 * 347.22533 * 9 8 6 11 11 C 1.54911 * 110.37553 * 109.59096 * 9 8 6 12 12 C 1.55140 * 101.65036 * 155.90089 * 11 9 8 13 13 C 1.54311 * 103.02126 * 324.35039 * 12 11 9 14 14 N 1.47441 * 107.23839 * 22.28160 * 13 12 11 15 15 C 1.46897 * 111.00262 * 123.25595 * 14 13 12 16 16 C 1.53001 * 109.47057 * 55.67463 * 15 14 13 17 17 H 1.09001 * 109.46774 * 303.85654 * 16 15 14 18 18 C 1.47199 * 109.47346 * 63.85814 * 16 15 14 19 19 N 4.72030 * 56.52503 * 251.30157 * 2 1 3 20 20 C 1.53003 * 109.47174 * 183.85992 * 16 15 14 21 21 C 1.50704 * 109.46940 * 174.99709 * 20 16 15 22 22 H 1.07994 * 120.00008 * 0.02562 * 21 20 16 23 23 C 1.37877 * 119.99757 * 180.02562 * 21 20 16 24 24 N 1.31518 * 120.00281 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47587 * 90.00060 * 25 23 21 27 27 H 1.48506 * 109.46777 * 209.99727 * 25 23 21 28 28 H 1.48499 * 109.47394 * 329.99527 * 25 23 21 29 29 H 1.09000 * 109.47220 * 90.02026 * 1 2 3 30 30 H 1.09003 * 109.46786 * 210.02007 * 1 2 3 31 31 H 1.09003 * 109.47324 * 330.01818 * 1 2 3 32 32 H 1.08997 * 109.47495 * 90.02651 * 5 4 3 33 33 H 1.09009 * 109.46740 * 210.02203 * 5 4 3 34 34 H 1.08998 * 109.47327 * 330.02085 * 5 4 3 35 35 H 1.09001 * 109.46609 * 90.02479 * 7 6 4 36 36 H 1.08997 * 109.47483 * 210.02926 * 7 6 4 37 37 H 1.09002 * 109.47116 * 330.03269 * 7 6 4 38 38 H 1.08995 * 110.99139 * 274.00137 * 11 9 8 39 39 H 1.09001 * 110.98502 * 37.81327 * 11 9 8 40 40 H 1.08999 * 110.70118 * 205.96270 * 12 11 9 41 41 H 1.08994 * 110.70410 * 82.73743 * 12 11 9 42 42 H 1.09008 * 109.88897 * 262.87590 * 13 12 11 43 43 H 1.08996 * 109.89038 * 141.69148 * 13 12 11 44 44 H 1.08998 * 109.47472 * 175.67563 * 15 14 13 45 45 H 1.09003 * 109.47027 * 295.67488 * 15 14 13 46 46 H 1.09000 * 109.46983 * 295.00034 * 20 16 15 47 47 H 1.08998 * 109.46961 * 54.99827 * 20 16 15 48 48 H 0.96992 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0060 5 6 4.7898 1.5009 0.0085 6 6 3.6142 -0.7153 0.0101 7 6 4.8350 -1.5989 0.0166 8 6 2.3272 -1.1330 0.0063 9 6 1.8599 -2.5657 0.0094 10 1 2.6911 -3.2356 -0.2109 11 6 1.2241 -2.9228 1.3762 12 6 0.2934 -4.1024 0.9902 13 6 -0.2059 -3.7059 -0.4150 14 7 0.7721 -2.7545 -0.9739 15 6 1.3003 -3.2356 -2.2574 16 6 0.1402 -3.5014 -3.2189 17 1 -0.5559 -4.2051 -2.7625 18 6 -0.5576 -2.2378 -3.5071 19 7 -1.0966 -1.2623 -3.7295 20 6 0.6827 -4.0931 -4.5214 21 6 -0.4674 -4.4688 -5.4198 22 1 -1.4836 -4.3018 -5.0945 23 6 -0.2223 -5.0256 -6.6571 24 7 1.0152 -5.2293 -7.0531 25 14 -1.6479 -5.4906 -7.7710 26 1 -1.9976 -4.3353 -8.6361 27 1 -1.2565 -6.6443 -8.6203 28 1 -2.8229 -5.8621 -6.9423 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5136 32 1 5.0792 1.7178 1.0368 33 1 5.6111 0.9973 -0.5015 34 1 4.5581 2.4324 -0.5079 35 1 5.1259 -1.8090 1.0458 36 1 4.6093 -2.5342 -0.4955 37 1 5.6529 -1.0922 -0.4958 38 1 1.9844 -3.2422 2.0889 39 1 0.6493 -2.0846 1.7702 40 1 -0.5404 -4.1796 1.6880 41 1 0.8522 -5.0373 0.9511 42 1 -1.1843 -3.2310 -0.3406 43 1 -0.2677 -4.5898 -1.0497 44 1 1.9605 -2.4807 -2.6845 45 1 1.8586 -4.1581 -2.0977 46 1 1.3092 -3.3551 -5.0225 47 1 1.2746 -4.9808 -4.2985 48 1 1.1876 -5.6207 -7.9237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106908520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:36:39 Heat of formation + Delta-G solvation = 93.977951 kcal Electronic energy + Delta-G solvation = -27194.762863 eV Core-core repulsion = 23671.929746 eV Total energy + Delta-G solvation = -3522.833117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.36915 -39.04274 -36.21606 -34.10678 -33.76094 -32.63716 -32.33180 -30.29072 -29.46576 -28.97599 -26.49271 -26.31361 -25.11554 -23.38609 -21.88171 -21.31204 -20.54649 -19.41490 -19.10181 -16.68568 -16.58722 -16.27341 -15.78776 -15.70637 -15.16629 -14.51467 -14.15595 -13.99389 -13.71487 -13.45608 -13.28421 -13.16323 -12.94563 -12.73421 -12.64279 -12.52385 -12.44952 -12.26895 -11.95432 -11.85952 -11.76405 -11.74990 -11.34961 -11.21320 -11.08906 -11.04378 -10.97784 -10.67089 -10.61071 -10.49695 -10.22244 -10.07579 -9.49894 -9.20031 -8.91410 -8.43706 -8.13130 -8.05215 -6.07922 -4.10801 1.91592 2.54842 2.87678 3.30993 3.37557 3.40791 3.81650 3.90355 4.12909 4.42506 4.52267 4.60897 4.73479 4.81790 4.93291 4.96204 4.99226 5.07840 5.12862 5.23213 5.27555 5.30390 5.34881 5.49302 5.53695 5.56407 5.66590 5.69043 5.75172 5.81648 5.88063 5.92465 5.99403 6.09614 6.12715 6.21528 6.27309 6.30912 6.35747 6.51382 6.54474 6.90013 7.07173 7.24859 7.33674 7.44881 7.56088 7.87575 7.90847 8.25511 8.66426 8.94097 9.54563 11.03034 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.003520 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.700042 B = 7953.483218 C = 8332.542077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.112 3.888 3 N -0.310 5.310 4 N -0.380 5.380 5 C 0.105 3.895 6 C 0.080 3.920 7 C -0.091 4.091 8 C -0.213 4.213 9 C 0.153 3.847 10 H 0.060 0.940 11 C -0.118 4.118 12 C -0.141 4.141 13 C 0.035 3.965 14 N -0.522 5.522 15 C 0.062 3.938 16 C 0.007 3.993 17 H 0.101 0.899 18 C 0.256 3.744 19 N -0.478 5.478 20 C 0.032 3.968 21 C -0.524 4.524 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.272 1.272 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.025 0.975 47 H 0.036 0.964 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 4.148 20.048 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 N -0.132 5.132 4 N -0.163 5.163 5 C -0.036 4.036 6 C -0.047 4.047 7 C -0.149 4.149 8 C -0.225 4.225 9 C 0.044 3.956 10 H 0.078 0.922 11 C -0.157 4.157 12 C -0.180 4.180 13 C -0.092 4.092 14 N -0.246 5.246 15 C -0.067 4.067 16 C -0.015 4.015 17 H 0.119 0.881 18 C -0.061 4.061 19 N -0.155 5.155 20 C -0.007 4.007 21 C -0.563 4.563 22 H 0.075 0.925 23 C -0.139 4.139 24 N -0.531 5.531 25 Si 0.718 3.282 26 H -0.207 1.207 27 H -0.211 1.211 28 H -0.197 1.197 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.043 0.957 47 H 0.054 0.946 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.738 7.403 19.450 22.204 hybrid contribution 0.047 -2.151 -0.711 2.266 sum 7.786 5.253 18.739 20.961 Atomic orbital electron populations 1.20127 0.86536 1.01846 1.03549 1.22104 0.96860 0.89647 0.96857 1.77334 0.86000 1.22747 1.27096 1.48202 1.05551 1.03927 1.58587 1.21733 0.84157 0.94960 1.02793 1.20766 0.96771 0.84667 1.02489 1.20449 0.93038 0.98511 1.02937 1.19426 0.90556 0.95611 1.16882 1.20636 0.92854 0.90856 0.91215 0.92229 1.22732 0.98563 0.98119 0.96255 1.22794 0.99551 0.98187 0.97460 1.22910 0.96855 0.95246 0.94213 1.63483 1.13195 1.45069 1.02825 1.22336 0.96297 0.99299 0.88735 1.19337 0.94975 0.87748 0.99410 0.88139 1.28832 0.92546 0.93851 0.90857 1.80997 1.10661 1.12695 1.11157 1.19159 0.96868 0.96283 0.88353 1.21145 0.92720 1.41234 1.01166 0.92513 1.24945 0.95574 0.95547 0.97861 1.69938 1.18622 1.44089 1.20445 0.86608 0.82689 0.78098 0.80780 1.20657 1.21135 1.19720 0.90072 0.90202 0.92505 0.91232 0.89849 0.89544 0.90468 0.89582 0.91316 0.91321 0.90638 0.91002 0.91464 0.90631 0.91465 0.90514 0.93104 0.95697 0.94562 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 9.51 36.00 0.34 -0.53 16 2 C 0.11 1.69 7.09 -82.40 -0.58 1.11 16 3 N -0.31 -4.92 12.58 33.67 0.42 -4.49 16 4 N -0.38 -4.91 4.01 -63.88 -0.26 -5.16 16 5 C 0.11 0.87 11.27 59.85 0.67 1.54 16 6 C 0.08 0.97 6.93 -82.26 -0.57 0.40 16 7 C -0.09 -0.74 9.85 36.01 0.35 -0.38 16 8 C -0.21 -2.86 5.10 -105.05 -0.54 -3.40 16 9 C 0.15 1.81 2.52 -67.33 -0.17 1.64 16 10 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 11 C -0.12 -1.17 6.22 -24.59 -0.15 -1.32 16 12 C -0.14 -1.32 6.94 -24.91 -0.17 -1.49 16 13 C 0.04 0.41 6.09 -2.84 -0.02 0.40 16 14 N -0.52 -6.99 3.40 -224.75 -0.76 -7.76 16 15 C 0.06 0.95 4.17 -3.83 -0.02 0.94 16 16 C 0.01 0.13 1.96 -93.41 -0.18 -0.05 16 17 H 0.10 1.73 6.13 -51.93 -0.32 1.42 16 18 C 0.26 5.42 13.64 -20.74 -0.28 5.14 16 19 N -0.48 -10.98 18.54 42.18 0.78 -10.20 16 20 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 21 C -0.52 -14.02 8.60 -34.44 -0.30 -14.31 16 22 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 25 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.02 6.05 -51.93 -0.31 0.70 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.50 7.05 -51.92 -0.37 0.13 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.69 7.05 -51.93 -0.37 0.32 16 37 H 0.07 0.46 7.08 -51.93 -0.37 0.09 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.79 6.63 -51.93 -0.34 0.45 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.07 0.80 6.06 -51.93 -0.31 0.49 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.05 0.71 8.01 -51.93 -0.42 0.29 16 46 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -33.02 386.57 -7.85 -40.87 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.75 Total: -2.51 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.83 Total: -8.06 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.92 Total: -52.50 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.02 -7.85 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106908520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.851 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds