Wall clock time and date at job start Fri Apr 10 2020 14:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30841 * 125.89865 * 2 1 4 4 N 1.40081 * 108.20541 * 179.74208 * 3 2 1 5 5 C 1.46504 * 126.03453 * 180.02562 * 4 3 2 6 6 C 1.34948 * 107.92805 * 359.97438 * 4 3 2 7 7 C 1.50701 * 126.12971 * 179.97438 * 6 4 3 8 8 C 1.35312 * 107.74475 * 0.02562 * 6 4 3 9 9 C 1.50703 * 126.04255 * 180.02562 * 8 6 4 10 10 H 1.09004 * 110.32931 * 347.22533 * 9 8 6 11 11 C 1.54911 * 110.37553 * 109.59096 * 9 8 6 12 12 C 1.55140 * 101.65036 * 155.90089 * 11 9 8 13 13 C 1.54311 * 103.02126 * 324.35039 * 12 11 9 14 14 N 1.47441 * 107.23839 * 22.28160 * 13 12 11 15 15 C 1.46897 * 111.00262 * 123.25595 * 14 13 12 16 16 C 1.53001 * 109.47057 * 55.67463 * 15 14 13 17 17 H 1.09001 * 109.46774 * 303.85654 * 16 15 14 18 18 C 1.47199 * 109.47346 * 63.85814 * 16 15 14 19 19 N 4.72030 * 56.52503 * 251.30157 * 2 1 3 20 20 C 1.53003 * 109.47174 * 183.85992 * 16 15 14 21 21 C 1.50704 * 109.46940 * 174.99709 * 20 16 15 22 22 H 1.07994 * 120.00008 * 0.02562 * 21 20 16 23 23 C 1.37877 * 119.99757 * 180.02562 * 21 20 16 24 24 N 1.31518 * 120.00281 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47587 * 90.00060 * 25 23 21 27 27 H 1.48506 * 109.46777 * 209.99727 * 25 23 21 28 28 H 1.48499 * 109.47394 * 329.99527 * 25 23 21 29 29 H 1.09000 * 109.47220 * 90.02026 * 1 2 3 30 30 H 1.09003 * 109.46786 * 210.02007 * 1 2 3 31 31 H 1.09003 * 109.47324 * 330.01818 * 1 2 3 32 32 H 1.08997 * 109.47495 * 90.02651 * 5 4 3 33 33 H 1.09009 * 109.46740 * 210.02203 * 5 4 3 34 34 H 1.08998 * 109.47327 * 330.02085 * 5 4 3 35 35 H 1.09001 * 109.46609 * 90.02479 * 7 6 4 36 36 H 1.08997 * 109.47483 * 210.02926 * 7 6 4 37 37 H 1.09002 * 109.47116 * 330.03269 * 7 6 4 38 38 H 1.08995 * 110.99139 * 274.00137 * 11 9 8 39 39 H 1.09001 * 110.98502 * 37.81327 * 11 9 8 40 40 H 1.08999 * 110.70118 * 205.96270 * 12 11 9 41 41 H 1.08994 * 110.70410 * 82.73743 * 12 11 9 42 42 H 1.09008 * 109.88897 * 262.87590 * 13 12 11 43 43 H 1.08996 * 109.89038 * 141.69148 * 13 12 11 44 44 H 1.08998 * 109.47472 * 175.67563 * 15 14 13 45 45 H 1.09003 * 109.47027 * 295.67488 * 15 14 13 46 46 H 1.09000 * 109.46983 * 295.00034 * 20 16 15 47 47 H 1.08998 * 109.46961 * 54.99827 * 20 16 15 48 48 H 0.96992 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0060 5 6 4.7898 1.5009 0.0085 6 6 3.6142 -0.7153 0.0101 7 6 4.8350 -1.5989 0.0166 8 6 2.3272 -1.1330 0.0063 9 6 1.8599 -2.5657 0.0094 10 1 2.6911 -3.2356 -0.2109 11 6 1.2241 -2.9228 1.3762 12 6 0.2934 -4.1024 0.9902 13 6 -0.2059 -3.7059 -0.4150 14 7 0.7721 -2.7545 -0.9739 15 6 1.3003 -3.2356 -2.2574 16 6 0.1402 -3.5014 -3.2189 17 1 -0.5559 -4.2051 -2.7625 18 6 -0.5576 -2.2378 -3.5071 19 7 -1.0966 -1.2623 -3.7295 20 6 0.6827 -4.0931 -4.5214 21 6 -0.4674 -4.4688 -5.4198 22 1 -1.4836 -4.3018 -5.0945 23 6 -0.2223 -5.0256 -6.6571 24 7 1.0152 -5.2293 -7.0531 25 14 -1.6479 -5.4906 -7.7710 26 1 -1.9976 -4.3353 -8.6361 27 1 -1.2565 -6.6443 -8.6203 28 1 -2.8229 -5.8621 -6.9423 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5136 32 1 5.0792 1.7178 1.0368 33 1 5.6111 0.9973 -0.5015 34 1 4.5581 2.4324 -0.5079 35 1 5.1259 -1.8090 1.0458 36 1 4.6093 -2.5342 -0.4955 37 1 5.6529 -1.0922 -0.4958 38 1 1.9844 -3.2422 2.0889 39 1 0.6493 -2.0846 1.7702 40 1 -0.5404 -4.1796 1.6880 41 1 0.8522 -5.0373 0.9511 42 1 -1.1843 -3.2310 -0.3406 43 1 -0.2677 -4.5898 -1.0497 44 1 1.9605 -2.4807 -2.6845 45 1 1.8586 -4.1581 -2.0977 46 1 1.3092 -3.3551 -5.0225 47 1 1.2746 -4.9808 -4.2985 48 1 1.1876 -5.6207 -7.9237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106908520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:36:38 Heat of formation + Delta-G solvation = 74.921592 kcal Electronic energy + Delta-G solvation = -27195.589209 eV Core-core repulsion = 23671.929746 eV Total energy + Delta-G solvation = -3523.659463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.32138 -40.09050 -37.79837 -35.63967 -34.96494 -34.22932 -33.26751 -31.66143 -30.39309 -29.85408 -28.07280 -27.29614 -26.01341 -24.78552 -23.61229 -22.25496 -21.56185 -20.32734 -20.08679 -18.52076 -18.08066 -17.30167 -16.97122 -16.58429 -16.44643 -16.07556 -15.42947 -14.89247 -14.75353 -14.61863 -14.34965 -14.32928 -14.04135 -13.94144 -13.80968 -13.69302 -13.55584 -13.32779 -13.25182 -13.16115 -13.03159 -12.89127 -12.74973 -12.67523 -12.46610 -12.38748 -12.18348 -12.02174 -11.95376 -11.69641 -11.50797 -11.31437 -11.14559 -11.09846 -10.54810 -9.90892 -9.07592 -9.05223 -8.18743 -6.26865 0.97962 1.40008 1.42592 1.51553 1.72739 1.84091 2.10902 2.17771 2.42081 3.10219 3.17124 3.39945 3.69835 3.82831 3.88617 3.99358 4.21602 4.23638 4.32710 4.35370 4.37396 4.41005 4.45257 4.58792 4.59603 4.64194 4.72723 4.77191 4.79896 4.84913 4.86747 5.01529 5.02516 5.10101 5.11349 5.16334 5.17478 5.29825 5.34552 5.38436 5.47175 5.54613 5.63055 5.79988 5.86446 6.16421 6.22626 6.29411 6.35015 6.84410 6.89745 6.97094 7.41643 8.92258 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.003520 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.700042 B = 7953.483218 C = 8332.542077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.090 3.910 3 N -0.353 5.353 4 N -0.384 5.384 5 C 0.095 3.905 6 C 0.082 3.918 7 C -0.089 4.089 8 C -0.233 4.233 9 C 0.155 3.845 10 H 0.072 0.928 11 C -0.111 4.111 12 C -0.130 4.130 13 C 0.031 3.969 14 N -0.535 5.535 15 C 0.077 3.923 16 C 0.019 3.981 17 H 0.121 0.879 18 C 0.265 3.735 19 N -0.514 5.514 20 C 0.040 3.960 21 C -0.537 4.537 22 H 0.054 0.946 23 C 0.013 3.987 24 N -0.923 5.923 25 Si 0.947 3.053 26 H -0.286 1.286 27 H -0.277 1.277 28 H -0.263 1.263 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.072 0.928 46 H -0.005 1.005 47 H 0.037 0.963 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 2.671 21.696 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.075 4.075 3 N -0.176 5.176 4 N -0.167 5.167 5 C -0.045 4.045 6 C -0.046 4.046 7 C -0.147 4.147 8 C -0.245 4.245 9 C 0.047 3.953 10 H 0.090 0.910 11 C -0.149 4.149 12 C -0.169 4.169 13 C -0.096 4.096 14 N -0.260 5.260 15 C -0.053 4.053 16 C -0.003 4.003 17 H 0.138 0.862 18 C -0.051 4.051 19 N -0.191 5.191 20 C 0.001 3.999 21 C -0.576 4.576 22 H 0.072 0.928 23 C -0.186 4.186 24 N -0.563 5.563 25 Si 0.772 3.228 26 H -0.212 1.212 27 H -0.203 1.203 28 H -0.187 1.187 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.013 0.987 47 H 0.055 0.945 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.710 5.932 21.115 23.599 hybrid contribution -0.189 -1.620 -1.216 2.034 sum 8.520 4.313 19.899 22.072 Atomic orbital electron populations 1.19993 0.86734 1.02547 1.01699 1.22284 0.97132 0.90512 0.97601 1.77223 0.87808 1.23883 1.28693 1.48574 1.05438 1.04930 1.57731 1.22085 0.83332 0.94657 1.04413 1.21418 0.97843 0.84763 1.00587 1.20594 0.91616 0.97811 1.04634 1.19701 0.90995 0.95982 1.17811 1.20705 0.92765 0.90198 0.91674 0.90971 1.22688 0.98892 0.97947 0.95417 1.22741 0.99926 0.98339 0.95848 1.22953 0.96189 0.94681 0.95827 1.63388 1.14223 1.45770 1.02579 1.22091 0.94453 0.99686 0.89031 1.19320 0.96223 0.86626 0.98124 0.86171 1.29366 0.91798 0.94006 0.89926 1.80992 1.12049 1.13928 1.12142 1.18971 0.95543 0.95541 0.89829 1.21540 0.93516 1.40630 1.01864 0.92802 1.25694 0.97743 0.95802 0.99384 1.70030 1.20264 1.45075 1.20964 0.85721 0.80255 0.77703 0.79077 1.21243 1.20253 1.18669 0.93034 0.89109 0.92190 0.89318 0.87198 0.89979 0.88231 0.89266 0.89712 0.89382 0.91651 0.89692 0.90156 0.91410 0.91522 0.92381 0.91050 0.98676 0.94523 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.49 9.51 71.23 0.68 -0.82 16 2 C 0.09 2.77 7.09 43.10 0.31 3.07 16 3 N -0.35 -11.38 12.58 -47.38 -0.60 -11.98 16 4 N -0.38 -9.56 4.01 -356.02 -1.43 -10.99 16 5 C 0.10 1.41 11.27 127.77 1.44 2.85 16 6 C 0.08 1.86 6.93 41.40 0.29 2.14 16 7 C -0.09 -1.15 9.85 71.24 0.70 -0.45 16 8 C -0.23 -6.05 5.10 -20.14 -0.10 -6.16 16 9 C 0.16 3.36 2.52 44.64 0.11 3.47 16 10 H 0.07 1.39 6.43 -2.39 -0.02 1.37 16 11 C -0.11 -1.90 6.22 31.98 0.20 -1.70 16 12 C -0.13 -2.04 6.94 31.77 0.22 -1.81 16 13 C 0.03 0.67 6.09 86.64 0.53 1.19 16 14 N -0.54 -13.78 3.40 -864.98 -2.94 -16.72 16 15 C 0.08 2.28 4.17 86.30 0.36 2.64 16 16 C 0.02 0.69 1.96 -12.60 -0.02 0.66 16 17 H 0.12 4.00 6.13 -2.39 -0.01 3.98 16 18 C 0.27 11.39 13.64 89.44 1.22 12.61 16 19 N -0.51 -24.15 18.54 20.01 0.37 -23.78 16 20 C 0.04 1.87 4.42 29.85 0.13 2.00 16 21 C -0.54 -28.72 8.60 25.60 0.22 -28.50 16 22 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 23 C 0.01 0.70 5.46 84.65 0.46 1.16 16 24 N -0.92 -53.27 13.29 21.45 0.28 -52.98 16 25 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 26 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 2.35 6.05 -2.39 -0.01 2.33 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 1.02 7.05 -2.38 -0.02 1.00 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 1.14 7.05 -2.39 -0.02 1.12 16 37 H 0.08 0.84 7.08 -2.39 -0.02 0.82 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.26 6.63 -2.39 -0.02 1.25 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.07 1.45 6.06 -2.39 -0.01 1.43 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 1.83 8.01 -2.39 -0.02 1.81 16 46 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -72.65 386.57 5.40 -67.24 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.95 Total: 11.13 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 6.74 Total: -7.64 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -4.31 Total: -116.44 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.65 5.40 -67.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106908520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.164 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds