Wall clock time and date at job start Fri Apr 10 2020 14:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46822 * 2 1 4 4 C 1.42899 * 114.00212 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47268 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47014 * 304.99700 * 5 4 3 7 7 O 1.42897 * 109.47122 * 65.00029 * 5 4 3 8 8 C 1.52999 * 109.46745 * 184.99733 * 5 4 3 9 9 N 1.46905 * 109.46952 * 173.42579 * 8 5 4 10 10 C 1.46896 * 111.00274 * 201.69695 * 9 8 5 11 11 C 1.50708 * 109.47138 * 75.73817 * 10 9 8 12 12 H 1.08004 * 119.99243 * 4.67185 * 11 10 9 13 13 C 1.37869 * 120.00083 * 184.66656 * 11 10 9 14 14 N 1.31516 * 120.00102 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00003 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46912 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47120 * 119.99741 * 15 13 11 18 18 H 1.48499 * 109.47343 * 240.00297 * 15 13 11 19 19 C 1.46901 * 110.99686 * 77.74460 * 9 8 5 20 20 C 1.52998 * 109.46970 * 195.67770 * 19 9 8 21 21 N 1.46901 * 109.46970 * 179.97438 * 20 19 9 22 22 C 1.47012 * 111.00069 * 293.63382 * 21 20 19 23 23 C 1.53096 * 109.25780 * 177.60637 * 22 21 20 24 24 O 1.43022 * 109.25815 * 56.85240 * 23 22 21 25 25 C 1.43017 * 113.73543 * 301.32653 * 24 23 22 26 26 C 1.47013 * 110.99953 * 169.99904 * 21 20 19 27 27 H 1.09007 * 109.47743 * 299.99880 * 1 2 3 28 28 H 1.09002 * 109.47352 * 59.99959 * 1 2 3 29 29 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47484 * 240.00154 * 2 1 3 31 31 H 1.08998 * 109.47102 * 119.99136 * 2 1 3 32 32 H 1.08996 * 109.47347 * 59.99499 * 4 3 2 33 33 H 1.09010 * 109.46533 * 299.99906 * 4 3 2 34 34 H 0.96706 * 114.00270 * 59.99868 * 7 5 4 35 35 H 1.09000 * 109.47659 * 293.43046 * 8 5 4 36 36 H 1.09003 * 109.47391 * 53.42773 * 8 5 4 37 37 H 1.08993 * 109.47576 * 195.74499 * 10 9 8 38 38 H 1.09004 * 109.47183 * 315.74734 * 10 9 8 39 39 H 0.97003 * 119.99753 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.47270 * 315.68136 * 19 9 8 41 41 H 1.09006 * 109.47076 * 75.67709 * 19 9 8 42 42 H 1.09001 * 109.47111 * 300.00025 * 20 19 9 43 43 H 1.09005 * 109.46769 * 60.00211 * 20 19 9 44 44 H 1.08996 * 109.50957 * 297.54626 * 22 21 20 45 45 H 1.09000 * 109.50408 * 57.67457 * 22 21 20 46 46 H 1.09001 * 109.51082 * 296.91552 * 23 22 21 47 47 H 1.08995 * 109.54766 * 176.80739 * 23 22 21 48 48 H 1.08994 * 109.50914 * 298.73714 * 25 24 23 49 49 H 1.09000 * 109.53994 * 178.62086 * 25 24 23 50 50 H 1.09004 * 109.51094 * 302.33182 * 26 21 20 51 51 H 1.09006 * 109.50336 * 62.41539 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8252 2.9386 0.0001 6 1 3.3490 3.4421 -0.8412 7 8 3.3984 3.5449 1.2217 8 6 5.3450 3.0609 -0.1262 9 7 5.7111 4.4748 -0.2837 10 6 7.0345 4.6098 -0.9069 11 6 6.9269 4.3208 -2.3821 12 1 5.9602 4.1369 -2.8271 13 6 8.0625 4.2913 -3.1633 14 7 9.2397 4.5149 -2.6212 15 14 7.9292 3.9338 -4.9919 16 1 6.5044 3.7196 -5.3518 17 1 8.4659 5.0847 -5.7618 18 1 8.7109 2.7135 -5.3161 19 6 5.6619 5.1781 1.0051 20 6 5.6593 6.6886 0.7620 21 7 5.6095 7.3919 2.0508 22 6 4.3295 7.1519 2.7328 23 6 4.3436 7.8520 4.0942 24 8 4.6034 9.2457 3.9053 25 6 5.8426 9.5158 3.2443 26 6 5.8436 8.8325 1.8743 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8332 0.9769 -0.8907 33 1 3.8339 0.9766 0.8893 34 1 3.7836 3.1464 2.0142 35 1 5.8176 2.6610 0.7710 36 1 5.6838 2.4987 -0.9965 37 1 7.4027 5.6253 -0.7614 38 1 7.7260 3.9033 -0.4478 39 1 10.0386 4.4944 -3.1710 40 1 4.7552 4.8945 1.5394 41 1 6.5340 4.9073 1.6003 42 1 6.5661 6.9722 0.2277 43 1 4.7871 6.9593 0.1668 44 1 3.5145 7.5490 2.1277 45 1 4.1886 6.0805 2.8760 46 1 5.1242 7.4177 4.7189 47 1 3.3762 7.7248 4.5798 48 1 6.6668 9.1299 3.8441 49 1 5.9596 10.5917 3.1144 50 1 6.8081 8.9880 1.3907 51 1 5.0533 9.2564 1.2548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362170961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:32 Heat of formation + Delta-G solvation = -131.477979 kcal Electronic energy + Delta-G solvation = -27980.826708 eV Core-core repulsion = 24108.615418 eV Total energy + Delta-G solvation = -3872.211291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.48544 -38.70029 -37.39406 -35.99395 -34.95314 -32.52390 -31.75681 -31.15195 -30.25990 -28.93556 -27.09960 -25.78343 -24.09914 -23.78765 -22.85749 -22.16072 -21.25857 -20.29903 -19.79440 -16.97197 -16.61219 -16.38754 -16.29782 -16.05322 -15.95570 -15.21437 -15.13093 -15.00833 -14.87162 -14.38160 -14.37203 -14.14046 -13.55099 -13.34117 -13.05712 -12.90090 -12.59016 -12.46591 -12.32836 -12.12554 -11.73346 -11.54171 -11.39649 -11.33614 -11.31949 -11.24649 -10.92883 -10.81693 -10.61325 -10.57081 -10.46132 -10.28801 -10.03966 -9.62868 -9.59847 -9.30233 -9.06696 -8.44530 -8.16883 -7.27298 -6.05004 -4.06758 3.27948 3.36144 3.40803 3.56741 3.80949 3.99173 4.40935 4.63105 4.83001 4.92094 4.95318 5.07275 5.11668 5.13851 5.20911 5.21734 5.24679 5.29736 5.33731 5.40853 5.46132 5.56394 5.59621 5.62031 5.66826 5.68284 5.73272 5.77984 5.88926 5.89322 5.97311 5.97691 6.05531 6.27350 6.35686 6.45578 6.51760 6.57529 7.08665 7.12634 7.19293 7.24180 7.27484 7.35599 7.81714 7.86617 8.09904 8.15673 8.52579 9.02727 9.58147 11.05084 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.006289 B = 0.004854 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4451.393706 B = 5767.403881 C = 9822.515285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.379 6.379 4 C 0.032 3.968 5 C 0.116 3.884 6 H 0.113 0.887 7 O -0.548 6.548 8 C 0.040 3.960 9 N -0.530 5.530 10 C 0.190 3.810 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.048 3.952 20 C 0.065 3.935 21 N -0.538 5.538 22 C 0.018 3.982 23 C 0.064 3.936 24 O -0.390 6.390 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.362 0.638 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.030 0.970 38 H -0.005 1.005 39 H 0.260 0.740 40 H 0.089 0.911 41 H 0.024 0.976 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.094 0.906 48 H 0.058 0.942 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.103 -2.024 11.425 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.298 6.298 4 C -0.046 4.046 5 C 0.057 3.943 6 H 0.131 0.869 7 O -0.352 6.352 8 C -0.090 4.090 9 N -0.254 5.254 10 C 0.065 3.935 11 C -0.544 4.544 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.212 1.212 19 C -0.081 4.081 20 C -0.063 4.063 21 N -0.264 5.264 22 C -0.111 4.111 23 C -0.013 4.013 24 O -0.309 6.309 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.209 0.791 35 H 0.043 0.957 36 H 0.110 0.890 37 H 0.048 0.952 38 H 0.013 0.987 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.042 0.958 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.109 0.891 46 H 0.075 0.925 47 H 0.112 0.888 48 H 0.076 0.924 49 H 0.112 0.888 50 H 0.104 0.896 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.459 -1.294 10.995 15.933 hybrid contribution 0.905 -1.180 -0.918 1.748 sum -10.554 -2.475 10.076 14.800 Atomic orbital electron populations 1.21728 0.93927 1.01905 1.03185 1.22444 0.95529 0.84409 0.99797 1.87963 1.20897 1.25626 1.95349 1.23297 0.81549 0.99034 1.00678 1.22087 0.94590 0.89624 0.87997 0.86947 1.86624 1.72476 1.60835 1.15292 1.22482 0.93280 0.92013 1.01195 1.61856 1.33184 1.09578 1.20797 1.19826 0.82747 0.96748 0.94182 1.21229 0.93179 1.47245 0.92767 0.91835 1.24989 0.95290 0.95600 0.98708 1.69971 0.97911 1.50176 1.35745 0.86498 0.78157 0.77806 0.85313 1.19633 1.21039 1.21166 1.22305 1.01039 0.93001 0.91724 1.22076 1.01794 0.94339 0.88065 1.62173 1.32160 1.08734 1.23286 1.22795 0.90874 1.01880 0.95528 1.22681 1.01363 0.81300 0.95960 1.87944 1.39636 1.24375 1.78942 1.22651 0.86542 0.99911 0.92074 1.22746 1.02119 0.88594 0.97575 0.91899 0.91829 0.91387 0.93574 0.93770 0.92211 0.93481 0.79138 0.95718 0.88960 0.95230 0.98740 0.93012 0.89331 0.95796 0.90291 0.94168 0.94079 0.89119 0.92510 0.88795 0.92394 0.88756 0.89584 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.59 6.66 37.16 0.25 0.83 16 3 O -0.38 -5.32 10.31 -40.08 -0.41 -5.73 16 4 C 0.03 0.42 5.57 37.16 0.21 0.63 16 5 C 0.12 1.79 3.47 -26.73 -0.09 1.70 16 6 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 7 O -0.55 -8.00 10.58 -40.08 -0.42 -8.42 16 8 C 0.04 0.70 4.61 -3.82 -0.02 0.68 16 9 N -0.53 -10.87 4.30 -236.07 -1.01 -11.88 16 10 C 0.19 4.76 4.56 -4.97 -0.02 4.74 16 11 C -0.51 -13.77 8.51 -34.44 -0.29 -14.06 16 12 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 13 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.05 0.85 4.69 -3.82 -0.02 0.83 16 20 C 0.06 1.14 5.02 -3.82 -0.02 1.12 16 21 N -0.54 -8.12 4.73 -234.30 -1.11 -9.23 16 22 C 0.02 0.23 5.44 -3.71 -0.02 0.21 16 23 C 0.06 0.75 7.01 37.21 0.26 1.01 16 24 O -0.39 -5.19 10.83 -35.23 -0.38 -5.57 16 25 C 0.07 0.77 7.01 37.21 0.26 1.03 16 26 C 0.02 0.25 5.64 -3.71 -0.02 0.22 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.36 4.04 8.86 45.56 0.40 4.45 16 35 H 0.02 0.41 7.97 -51.93 -0.41 -0.01 16 36 H 0.09 1.79 7.28 -51.93 -0.38 1.41 16 37 H 0.03 0.80 6.23 -51.93 -0.32 0.47 16 38 H -0.01 -0.14 8.00 -51.93 -0.42 -0.56 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.09 1.43 3.32 -51.93 -0.17 1.26 16 41 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 42 H 0.08 1.56 6.42 -51.93 -0.33 1.22 16 43 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.17 6.38 -51.93 -0.33 0.84 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 51 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -31.17 397.63 -9.56 -40.73 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.69 Total: 3.89 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 0.76 Total: -0.59 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -1.39 Total: -46.57 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -1.22 Total: -19.72 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.17 -9.56 -40.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362170961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.745 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds