Wall clock time and date at job start Fri Apr 10 2020 14:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46822 * 2 1 4 4 C 1.42899 * 114.00212 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47268 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47014 * 304.99700 * 5 4 3 7 7 O 1.42897 * 109.47122 * 65.00029 * 5 4 3 8 8 C 1.52999 * 109.46745 * 184.99733 * 5 4 3 9 9 N 1.46905 * 109.46952 * 173.42579 * 8 5 4 10 10 C 1.46896 * 111.00274 * 201.69695 * 9 8 5 11 11 C 1.50708 * 109.47138 * 75.73817 * 10 9 8 12 12 H 1.08004 * 119.99243 * 4.67185 * 11 10 9 13 13 C 1.37869 * 120.00083 * 184.66656 * 11 10 9 14 14 N 1.31516 * 120.00102 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00003 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46912 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47120 * 119.99741 * 15 13 11 18 18 H 1.48499 * 109.47343 * 240.00297 * 15 13 11 19 19 C 1.46901 * 110.99686 * 77.74460 * 9 8 5 20 20 C 1.52998 * 109.46970 * 195.67770 * 19 9 8 21 21 N 1.46901 * 109.46970 * 179.97438 * 20 19 9 22 22 C 1.47012 * 111.00069 * 293.63382 * 21 20 19 23 23 C 1.53096 * 109.25780 * 177.60637 * 22 21 20 24 24 O 1.43022 * 109.25815 * 56.85240 * 23 22 21 25 25 C 1.43017 * 113.73543 * 301.32653 * 24 23 22 26 26 C 1.47013 * 110.99953 * 169.99904 * 21 20 19 27 27 H 1.09007 * 109.47743 * 299.99880 * 1 2 3 28 28 H 1.09002 * 109.47352 * 59.99959 * 1 2 3 29 29 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47484 * 240.00154 * 2 1 3 31 31 H 1.08998 * 109.47102 * 119.99136 * 2 1 3 32 32 H 1.08996 * 109.47347 * 59.99499 * 4 3 2 33 33 H 1.09010 * 109.46533 * 299.99906 * 4 3 2 34 34 H 0.96706 * 114.00270 * 59.99868 * 7 5 4 35 35 H 1.09000 * 109.47659 * 293.43046 * 8 5 4 36 36 H 1.09003 * 109.47391 * 53.42773 * 8 5 4 37 37 H 1.08993 * 109.47576 * 195.74499 * 10 9 8 38 38 H 1.09004 * 109.47183 * 315.74734 * 10 9 8 39 39 H 0.97003 * 119.99753 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.47270 * 315.68136 * 19 9 8 41 41 H 1.09006 * 109.47076 * 75.67709 * 19 9 8 42 42 H 1.09001 * 109.47111 * 300.00025 * 20 19 9 43 43 H 1.09005 * 109.46769 * 60.00211 * 20 19 9 44 44 H 1.08996 * 109.50957 * 297.54626 * 22 21 20 45 45 H 1.09000 * 109.50408 * 57.67457 * 22 21 20 46 46 H 1.09001 * 109.51082 * 296.91552 * 23 22 21 47 47 H 1.08995 * 109.54766 * 176.80739 * 23 22 21 48 48 H 1.08994 * 109.50914 * 298.73714 * 25 24 23 49 49 H 1.09000 * 109.53994 * 178.62086 * 25 24 23 50 50 H 1.09004 * 109.51094 * 302.33182 * 26 21 20 51 51 H 1.09006 * 109.50336 * 62.41539 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8252 2.9386 0.0001 6 1 3.3490 3.4421 -0.8412 7 8 3.3984 3.5449 1.2217 8 6 5.3450 3.0609 -0.1262 9 7 5.7111 4.4748 -0.2837 10 6 7.0345 4.6098 -0.9069 11 6 6.9269 4.3208 -2.3821 12 1 5.9602 4.1369 -2.8271 13 6 8.0625 4.2913 -3.1633 14 7 9.2397 4.5149 -2.6212 15 14 7.9292 3.9338 -4.9919 16 1 6.5044 3.7196 -5.3518 17 1 8.4659 5.0847 -5.7618 18 1 8.7109 2.7135 -5.3161 19 6 5.6619 5.1781 1.0051 20 6 5.6593 6.6886 0.7620 21 7 5.6095 7.3919 2.0508 22 6 4.3295 7.1519 2.7328 23 6 4.3436 7.8520 4.0942 24 8 4.6034 9.2457 3.9053 25 6 5.8426 9.5158 3.2443 26 6 5.8436 8.8325 1.8743 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8332 0.9769 -0.8907 33 1 3.8339 0.9766 0.8893 34 1 3.7836 3.1464 2.0142 35 1 5.8176 2.6610 0.7710 36 1 5.6838 2.4987 -0.9965 37 1 7.4027 5.6253 -0.7614 38 1 7.7260 3.9033 -0.4478 39 1 10.0386 4.4944 -3.1710 40 1 4.7552 4.8945 1.5394 41 1 6.5340 4.9073 1.6003 42 1 6.5661 6.9722 0.2277 43 1 4.7871 6.9593 0.1668 44 1 3.5145 7.5490 2.1277 45 1 4.1886 6.0805 2.8760 46 1 5.1242 7.4177 4.7189 47 1 3.3762 7.7248 4.5798 48 1 6.6668 9.1299 3.8441 49 1 5.9596 10.5917 3.1144 50 1 6.8081 8.9880 1.3907 51 1 5.0533 9.2564 1.2548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362170961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:31 Heat of formation + Delta-G solvation = -156.549553 kcal Electronic energy + Delta-G solvation = -27981.913894 eV Core-core repulsion = 24108.615418 eV Total energy + Delta-G solvation = -3873.298476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.61961 -39.88998 -38.61587 -37.20210 -36.36316 -34.57465 -32.70532 -32.17183 -31.43052 -30.42340 -28.81325 -26.98106 -25.64987 -24.93935 -23.78310 -23.65009 -22.51190 -21.59444 -21.23535 -18.62869 -18.02887 -17.52768 -17.43701 -17.10328 -17.00750 -16.89366 -16.36732 -16.15280 -16.05180 -15.87034 -15.61508 -15.42779 -14.81437 -14.74701 -14.32614 -14.18486 -13.97687 -13.84025 -13.37840 -13.26987 -13.16186 -13.06481 -12.78553 -12.64144 -12.47244 -12.35110 -12.28270 -12.22578 -12.21658 -12.06659 -11.80370 -11.68378 -11.44221 -11.28410 -10.71185 -10.61961 -10.56163 -10.43172 -9.41913 -8.98753 -8.18939 -6.29008 1.39068 1.40960 1.53694 2.38410 2.51687 2.71507 2.97436 3.12939 3.48932 3.49218 3.89125 3.99112 4.04939 4.05622 4.09661 4.17856 4.19479 4.20987 4.26529 4.36119 4.38578 4.40895 4.49862 4.51327 4.53126 4.60639 4.70982 4.77280 4.80386 4.84296 4.88755 4.90817 4.97458 5.02253 5.04345 5.08064 5.14370 5.23555 5.27488 5.33191 5.67460 5.91853 6.00002 6.11176 6.18453 6.24705 6.39234 6.65326 6.84924 6.88246 7.41068 8.91084 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.006289 B = 0.004854 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4451.393706 B = 5767.403881 C = 9822.515285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.403 6.403 4 C 0.039 3.961 5 C 0.132 3.868 6 H 0.086 0.914 7 O -0.555 6.555 8 C 0.042 3.958 9 N -0.539 5.539 10 C 0.208 3.792 11 C -0.518 4.518 12 H 0.060 0.940 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.963 3.037 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.277 1.277 19 C 0.056 3.944 20 C 0.076 3.924 21 N -0.541 5.541 22 C 0.018 3.982 23 C 0.066 3.934 24 O -0.403 6.403 25 C 0.069 3.931 26 C 0.015 3.985 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.381 0.619 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.004 0.996 38 H -0.034 1.034 39 H 0.263 0.737 40 H 0.113 0.887 41 H 0.015 0.985 42 H 0.050 0.950 43 H 0.026 0.974 44 H 0.030 0.970 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.118 0.882 48 H 0.063 0.937 49 H 0.117 0.883 50 H 0.083 0.917 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.455 -2.904 12.329 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.323 6.323 4 C -0.038 4.038 5 C 0.072 3.928 6 H 0.104 0.896 7 O -0.362 6.362 8 C -0.087 4.087 9 N -0.263 5.263 10 C 0.082 3.918 11 C -0.556 4.556 12 H 0.078 0.922 13 C -0.193 4.193 14 N -0.574 5.574 15 Si 0.788 3.212 16 H -0.189 1.189 17 H -0.207 1.207 18 H -0.203 1.203 19 C -0.072 4.072 20 C -0.052 4.052 21 N -0.267 5.267 22 C -0.110 4.110 23 C -0.010 4.010 24 O -0.322 6.322 25 C -0.007 4.007 26 C -0.114 4.114 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.229 0.771 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.022 0.978 38 H -0.016 1.016 39 H 0.072 0.928 40 H 0.130 0.870 41 H 0.033 0.967 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.115 0.885 46 H 0.082 0.918 47 H 0.136 0.864 48 H 0.082 0.918 49 H 0.135 0.865 50 H 0.102 0.898 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.832 -2.184 11.926 17.654 hybrid contribution 1.293 -0.905 -1.129 1.941 sum -11.539 -3.088 10.797 16.101 Atomic orbital electron populations 1.21755 0.92897 1.03330 1.02569 1.22692 0.96430 0.82999 1.00816 1.87923 1.20948 1.27873 1.95562 1.23141 0.81737 0.97072 1.01885 1.21695 0.92192 0.91206 0.87713 0.89607 1.86575 1.72520 1.61339 1.15755 1.22488 0.95258 0.89923 1.01011 1.61802 1.30207 1.11876 1.22419 1.19438 0.84391 0.94274 0.93710 1.21486 0.93088 1.47107 0.93930 0.92226 1.25834 0.94850 0.95254 1.03379 1.70091 0.98671 1.51097 1.37554 0.85432 0.78450 0.77780 0.79556 1.18885 1.20697 1.20298 1.22315 1.01602 0.92832 0.90410 1.21835 0.99609 0.94599 0.89175 1.62190 1.33400 1.09571 1.21529 1.22872 0.89404 1.02515 0.96215 1.22797 1.03012 0.80456 0.94784 1.87934 1.40165 1.25186 1.78901 1.22729 0.86340 1.01087 0.90573 1.22843 1.01739 0.87756 0.99025 0.92237 0.92708 0.88957 0.92997 0.92244 0.92120 0.91138 0.77062 0.94061 0.90968 0.97768 1.01604 0.92787 0.86982 0.96689 0.93172 0.95618 0.95166 0.88535 0.91752 0.86397 0.91849 0.86471 0.89812 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.05 0.90 6.66 71.98 0.48 1.38 16 3 O -0.40 -10.68 10.31 -144.34 -1.49 -12.17 16 4 C 0.04 0.97 5.57 71.98 0.40 1.37 16 5 C 0.13 3.97 3.47 30.59 0.11 4.07 16 6 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 7 O -0.56 -15.29 10.58 -144.34 -1.53 -16.82 16 8 C 0.04 1.49 4.61 86.30 0.40 1.89 16 9 N -0.54 -22.75 4.30 -900.78 -3.87 -26.62 16 10 C 0.21 10.91 4.56 85.56 0.39 11.30 16 11 C -0.52 -29.00 8.51 25.60 0.22 -28.79 16 12 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 13 C 0.00 0.27 5.46 84.65 0.46 0.73 16 14 N -0.93 -55.70 13.29 21.44 0.28 -55.41 16 15 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 16 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 C 0.06 2.04 4.69 86.30 0.40 2.44 16 20 C 0.08 2.78 5.02 86.30 0.43 3.21 16 21 N -0.54 -16.35 4.73 -895.20 -4.23 -20.58 16 22 C 0.02 0.46 5.44 86.31 0.47 0.93 16 23 C 0.07 1.41 7.01 72.01 0.50 1.91 16 24 O -0.40 -9.92 10.83 -148.98 -1.61 -11.54 16 25 C 0.07 1.54 7.01 72.02 0.50 2.04 16 26 C 0.01 0.40 5.64 86.31 0.49 0.88 16 27 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.38 7.48 8.86 -74.05 -0.66 6.82 16 35 H 0.04 1.32 7.97 -2.39 -0.02 1.30 16 36 H 0.07 2.85 7.28 -2.39 -0.02 2.84 16 37 H 0.00 0.24 6.23 -2.39 -0.01 0.23 16 38 H -0.03 -1.93 8.00 -2.38 -0.02 -1.95 16 39 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.11 3.52 3.32 -2.39 -0.01 3.51 16 41 H 0.01 0.57 8.06 -2.38 -0.02 0.55 16 42 H 0.05 2.11 6.42 -2.39 -0.02 2.09 16 43 H 0.03 1.00 8.12 -2.38 -0.02 0.98 16 44 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.10 2.33 6.38 -2.39 -0.02 2.31 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.08 2.27 8.09 -2.38 -0.02 2.25 16 51 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -68.42 397.63 -4.19 -72.62 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.23 Total: 22.72 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 6.00 Total: 1.72 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -7.82 Total: -102.61 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -4.63 Total: -40.53 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.42 -4.19 -72.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362170961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.934 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds