Wall clock time and date at job start Fri Apr 10 2020 14:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00001 * 2 1 4 4 C 1.53005 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47090 * 64.99592 * 4 3 2 6 6 C 1.36932 * 119.99655 * 90.00439 * 5 4 3 7 7 H 1.07995 * 120.00717 * 31.62011 * 6 5 4 8 8 C 1.38816 * 119.99706 * 211.61737 * 6 5 4 9 9 N 1.31617 * 119.99848 * 37.91685 * 8 6 5 10 10 Si 1.86799 * 120.00013 * 218.18894 * 8 6 5 11 11 H 1.48497 * 109.47302 * 264.74118 * 10 8 6 12 12 H 1.48505 * 109.47194 * 24.74531 * 10 8 6 13 13 H 1.48502 * 109.47054 * 144.73735 * 10 8 6 14 14 C 1.46499 * 119.99844 * 270.00090 * 5 4 3 15 15 C 1.52998 * 109.47105 * 269.13649 * 14 5 4 16 16 H 1.09000 * 109.47774 * 304.99842 * 15 14 5 17 17 O 1.42897 * 109.47023 * 65.00366 * 15 14 5 18 18 C 1.53005 * 109.47041 * 185.00374 * 15 14 5 19 19 N 1.46903 * 109.47032 * 182.12459 * 18 15 14 20 20 C 1.47018 * 110.99931 * 170.37733 * 19 18 15 21 21 C 1.53095 * 109.25856 * 182.38877 * 20 19 18 22 22 H 1.09004 * 109.50541 * 63.08198 * 21 20 19 23 23 C 1.52996 * 109.50893 * 183.21703 * 21 20 19 24 24 O 1.43019 * 109.25697 * 303.15192 * 21 20 19 25 25 C 1.43020 * 113.73773 * 58.67063 * 24 21 20 26 26 H 1.09002 * 109.53950 * 61.28799 * 25 24 21 27 27 C 1.53002 * 109.50241 * 181.39381 * 25 24 21 28 28 C 1.47015 * 110.99805 * 294.01178 * 19 18 15 29 29 H 1.09007 * 109.47629 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47320 * 300.00426 * 1 2 3 31 31 H 1.09010 * 109.47017 * 60.00296 * 1 2 3 32 32 H 1.08996 * 109.47465 * 59.99860 * 3 2 1 33 33 H 1.09002 * 109.47372 * 299.99228 * 3 2 1 34 34 H 1.09005 * 109.46605 * 305.00075 * 4 3 2 35 35 H 1.08995 * 109.47545 * 184.99983 * 4 3 2 36 36 H 0.96998 * 120.00043 * 0.27140 * 9 8 6 37 37 H 1.08996 * 109.47207 * 29.13852 * 14 5 4 38 38 H 1.09002 * 109.47097 * 149.13882 * 14 5 4 39 39 H 0.96703 * 114.00132 * 60.00033 * 17 15 14 40 40 H 1.09000 * 109.47112 * 302.12101 * 18 15 14 41 41 H 1.08999 * 109.47203 * 62.12138 * 18 15 14 42 42 H 1.09003 * 109.50593 * 302.32364 * 20 19 18 43 43 H 1.09001 * 109.50373 * 62.45756 * 20 19 18 44 44 H 1.08998 * 109.47352 * 179.78508 * 23 21 20 45 45 H 1.09001 * 109.46628 * 299.77983 * 23 21 20 46 46 H 1.08993 * 109.47194 * 59.78148 * 23 21 20 47 47 H 1.08997 * 109.46674 * 179.78279 * 27 25 24 48 48 H 1.09003 * 109.47091 * 299.78285 * 27 25 24 49 49 H 1.08996 * 109.47399 * 59.78024 * 27 25 24 50 50 H 1.09010 * 109.50335 * 297.54543 * 28 19 18 51 51 H 1.08993 * 109.50659 * 57.66922 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.2680 1.3450 -2.3371 7 1 4.6700 2.3374 -2.1963 8 6 4.0466 0.8613 -3.6192 9 7 2.9882 0.1200 -3.8693 10 14 5.2549 1.2562 -4.9880 11 1 4.7782 2.4434 -5.7419 12 1 6.5890 1.5443 -4.4028 13 1 5.3582 0.0946 -5.9074 14 6 4.1062 -0.8927 -1.3401 15 6 5.5292 -1.3027 -0.9556 16 1 6.2435 -0.7639 -1.5783 17 8 5.7613 -0.9860 0.4184 18 6 5.7014 -2.8081 -1.1682 19 7 7.0513 -3.2103 -0.7512 20 6 7.1800 -4.6746 -0.7244 21 6 8.5791 -5.0495 -0.2286 22 1 8.7084 -4.6990 0.7954 23 6 8.7471 -6.5695 -0.2744 24 8 9.5583 -4.4352 -1.0708 25 6 9.4624 -3.0090 -1.1198 26 1 9.6177 -2.5987 -0.1219 27 6 10.5270 -2.4578 -2.0703 28 6 8.0722 -2.6135 -1.6245 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8507 0.5684 0.8428 35 1 3.9785 2.1764 0.0902 36 1 2.3608 -0.0851 -3.1585 37 1 3.3963 -1.3630 -0.6598 38 1 3.8988 -1.2141 -2.3608 39 1 5.1605 -1.4314 1.0315 40 1 4.9623 -3.3457 -0.5743 41 1 5.5614 -3.0444 -2.2231 42 1 6.4312 -5.0935 -0.0521 43 1 7.0313 -5.0714 -1.7286 44 1 9.7447 -6.8355 0.0750 45 1 8.0006 -7.0370 0.3677 46 1 8.6157 -6.9189 -1.2985 47 1 10.4509 -1.3712 -2.1102 48 1 11.5165 -2.7398 -1.7104 49 1 10.3722 -2.8698 -3.0675 50 1 7.9377 -2.9775 -2.6432 51 1 7.9747 -1.5280 -1.6094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459546185.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:34 Heat of formation + Delta-G solvation = -118.168602 kcal Electronic energy + Delta-G solvation = -28965.171485 eV Core-core repulsion = 25093.537332 eV Total energy + Delta-G solvation = -3871.634153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.78370 -37.78541 -37.03325 -35.33584 -34.45180 -33.71291 -31.48655 -30.62358 -29.69496 -28.03070 -26.68544 -26.05376 -25.46702 -23.64659 -22.37628 -22.00733 -20.81143 -20.25466 -20.12822 -17.35012 -16.57741 -16.09165 -15.76130 -15.67578 -15.50077 -15.25416 -15.11088 -14.51592 -14.45096 -14.05613 -13.78703 -13.64629 -13.44064 -13.28153 -13.07676 -12.81044 -12.66219 -12.19866 -12.12797 -12.03364 -11.75591 -11.67000 -11.42628 -11.21713 -11.11718 -10.95206 -10.87970 -10.73400 -10.55398 -10.40954 -10.15461 -10.07644 -10.04048 -9.60419 -9.56761 -9.17906 -9.01535 -8.18404 -8.13021 -6.73353 -6.16713 -3.19302 3.46948 3.51991 3.64676 3.67425 3.90554 4.45583 4.58489 4.74014 4.94797 4.98199 5.07482 5.14817 5.19786 5.26629 5.36459 5.40721 5.44322 5.47263 5.54265 5.58614 5.61061 5.67765 5.74176 5.77913 5.84679 5.87071 5.97184 5.98156 6.01242 6.02902 6.09844 6.10403 6.18672 6.20674 6.23292 6.34797 6.44313 6.62370 6.87441 6.97938 7.13635 7.17183 7.19929 7.30353 7.81799 8.15294 8.44040 8.60020 9.15977 9.87464 10.37272 11.11310 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.004209 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.151769 B = 6651.148688 C = 7990.330406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.040 3.960 4 C 0.155 3.845 5 N -0.575 5.575 6 C -0.368 4.368 7 H 0.051 0.949 8 C -0.012 4.012 9 N -0.889 5.889 10 Si 1.048 2.952 11 H -0.294 1.294 12 H -0.290 1.290 13 H -0.288 1.288 14 C 0.121 3.879 15 C 0.095 3.905 16 H 0.094 0.906 17 O -0.547 6.547 18 C 0.024 3.976 19 N -0.524 5.524 20 C 0.022 3.978 21 C 0.092 3.908 22 H 0.065 0.935 23 C -0.143 4.143 24 O -0.384 6.384 25 C 0.093 3.907 26 H 0.066 0.934 27 C -0.144 4.144 28 C 0.023 3.977 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.024 0.976 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.273 0.727 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.356 0.644 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.038 0.962 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.039 0.961 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -8.748 7.979 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.039 4.039 4 C 0.028 3.972 5 N -0.295 5.295 6 C -0.497 4.497 7 H 0.068 0.932 8 C -0.218 4.218 9 N -0.527 5.527 10 Si 0.878 3.122 11 H -0.221 1.221 12 H -0.217 1.217 13 H -0.214 1.214 14 C -0.006 4.006 15 C 0.033 3.967 16 H 0.111 0.889 17 O -0.350 6.350 18 C -0.105 4.105 19 N -0.248 5.248 20 C -0.106 4.106 21 C 0.034 3.966 22 H 0.083 0.917 23 C -0.201 4.201 24 O -0.304 6.304 25 C 0.035 3.965 26 H 0.084 0.916 27 C -0.202 4.202 28 C -0.106 4.106 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.201 0.799 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.057 0.943 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.352 -8.668 6.451 13.070 hybrid contribution -1.597 0.061 0.975 1.872 sum 5.755 -8.607 7.427 12.742 Atomic orbital electron populations 1.22605 0.83062 1.01557 0.99017 1.87894 1.17951 1.28861 1.95151 1.23515 0.98461 0.83830 0.98108 1.20971 0.88554 0.97592 0.90124 1.43615 1.75955 1.01022 1.08861 1.19744 1.42644 1.01344 0.85955 0.93165 1.25672 0.97991 1.00225 0.97881 1.70755 1.07175 1.40273 1.34464 0.83804 0.76418 0.76178 0.75774 1.22140 1.21667 1.21358 1.21436 0.92073 0.85457 1.01684 1.22718 1.00722 0.90248 0.82975 0.88855 1.86564 1.60445 1.71865 1.16123 1.22940 0.89101 0.99354 0.99070 1.62203 1.03762 1.07035 1.51837 1.22824 0.97978 0.89350 1.00495 1.22086 0.87096 0.93389 0.94070 0.91742 1.21738 1.02484 0.93106 1.02734 1.87938 1.54268 1.19703 1.68502 1.22123 0.94136 0.80826 0.99432 0.91590 1.21749 0.98012 1.01029 0.99372 1.22850 0.91661 1.01534 0.94512 0.90657 0.95309 0.94617 0.95741 0.93481 0.93267 0.92499 0.91572 0.93910 0.90900 0.79874 0.90987 0.94106 0.90075 0.94380 0.91757 0.91065 0.91989 0.90687 0.91832 0.91954 0.94296 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.38 -7.55 9.54 -35.23 -0.34 -7.88 16 3 C 0.04 0.79 6.28 37.16 0.23 1.03 16 4 C 0.15 3.26 5.90 -4.04 -0.02 3.24 16 5 N -0.57 -13.85 2.22 -173.24 -0.38 -14.23 16 6 C -0.37 -9.99 9.30 -15.06 -0.14 -10.13 16 7 H 0.05 1.41 8.05 -52.49 -0.42 0.99 16 8 C -0.01 -0.34 4.53 -17.43 -0.08 -0.42 16 9 N -0.89 -25.77 12.39 55.49 0.69 -25.08 16 10 Si 1.05 24.84 30.05 -169.99 -5.11 19.73 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.12 2.70 4.49 -4.04 -0.02 2.68 16 15 C 0.10 1.85 3.04 -26.73 -0.08 1.77 16 16 H 0.09 2.08 6.60 -51.93 -0.34 1.74 16 17 O -0.55 -10.24 12.07 -35.23 -0.43 -10.67 16 18 C 0.02 0.40 4.63 -3.82 -0.02 0.38 16 19 N -0.52 -8.07 4.56 -234.30 -1.07 -9.14 16 20 C 0.02 0.29 4.93 -3.71 -0.02 0.27 16 21 C 0.09 1.12 3.43 -26.68 -0.09 1.03 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 C -0.14 -1.36 9.57 37.16 0.36 -1.01 16 24 O -0.38 -5.42 10.11 -35.23 -0.36 -5.77 16 25 C 0.09 1.27 3.43 -26.68 -0.09 1.18 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 C -0.14 -1.67 9.57 37.16 0.36 -1.32 16 28 C 0.02 0.35 4.72 -3.71 -0.02 0.33 16 29 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.97 7.19 -51.93 -0.37 0.60 16 35 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 36 H 0.27 8.11 7.71 -40.82 -0.31 7.79 16 37 H 0.04 0.92 7.13 -51.93 -0.37 0.55 16 38 H 0.07 1.85 5.65 -51.93 -0.29 1.56 16 39 H 0.36 5.64 9.05 45.56 0.41 6.06 16 40 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 41 H 0.04 0.73 8.12 -51.93 -0.42 0.30 16 42 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 51 H 0.09 1.56 6.41 -51.93 -0.33 1.23 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -30.34 399.30 -8.35 -38.68 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.85 Total: 7.65 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 1.48 Total: 0.70 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.76 Total: -48.45 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -1.12 Total: -24.32 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.11 Total: 19.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.34 -8.35 -38.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459546185.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.486 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds