Wall clock time and date at job start Fri Apr 10 2020 14:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00001 * 2 1 4 4 C 1.53005 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47090 * 64.99592 * 4 3 2 6 6 C 1.36932 * 119.99655 * 90.00439 * 5 4 3 7 7 H 1.07995 * 120.00717 * 31.62011 * 6 5 4 8 8 C 1.38816 * 119.99706 * 211.61737 * 6 5 4 9 9 N 1.31617 * 119.99848 * 37.91685 * 8 6 5 10 10 Si 1.86799 * 120.00013 * 218.18894 * 8 6 5 11 11 H 1.48497 * 109.47302 * 264.74118 * 10 8 6 12 12 H 1.48505 * 109.47194 * 24.74531 * 10 8 6 13 13 H 1.48502 * 109.47054 * 144.73735 * 10 8 6 14 14 C 1.46499 * 119.99844 * 270.00090 * 5 4 3 15 15 C 1.52998 * 109.47105 * 269.13649 * 14 5 4 16 16 H 1.09000 * 109.47774 * 304.99842 * 15 14 5 17 17 O 1.42897 * 109.47023 * 65.00366 * 15 14 5 18 18 C 1.53005 * 109.47041 * 185.00374 * 15 14 5 19 19 N 1.46903 * 109.47032 * 182.12459 * 18 15 14 20 20 C 1.47018 * 110.99931 * 170.37733 * 19 18 15 21 21 C 1.53095 * 109.25856 * 182.38877 * 20 19 18 22 22 H 1.09004 * 109.50541 * 63.08198 * 21 20 19 23 23 C 1.52996 * 109.50893 * 183.21703 * 21 20 19 24 24 O 1.43019 * 109.25697 * 303.15192 * 21 20 19 25 25 C 1.43020 * 113.73773 * 58.67063 * 24 21 20 26 26 H 1.09002 * 109.53950 * 61.28799 * 25 24 21 27 27 C 1.53002 * 109.50241 * 181.39381 * 25 24 21 28 28 C 1.47015 * 110.99805 * 294.01178 * 19 18 15 29 29 H 1.09007 * 109.47629 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47320 * 300.00426 * 1 2 3 31 31 H 1.09010 * 109.47017 * 60.00296 * 1 2 3 32 32 H 1.08996 * 109.47465 * 59.99860 * 3 2 1 33 33 H 1.09002 * 109.47372 * 299.99228 * 3 2 1 34 34 H 1.09005 * 109.46605 * 305.00075 * 4 3 2 35 35 H 1.08995 * 109.47545 * 184.99983 * 4 3 2 36 36 H 0.96998 * 120.00043 * 0.27140 * 9 8 6 37 37 H 1.08996 * 109.47207 * 29.13852 * 14 5 4 38 38 H 1.09002 * 109.47097 * 149.13882 * 14 5 4 39 39 H 0.96703 * 114.00132 * 60.00033 * 17 15 14 40 40 H 1.09000 * 109.47112 * 302.12101 * 18 15 14 41 41 H 1.08999 * 109.47203 * 62.12138 * 18 15 14 42 42 H 1.09003 * 109.50593 * 302.32364 * 20 19 18 43 43 H 1.09001 * 109.50373 * 62.45756 * 20 19 18 44 44 H 1.08998 * 109.47352 * 179.78508 * 23 21 20 45 45 H 1.09001 * 109.46628 * 299.77983 * 23 21 20 46 46 H 1.08993 * 109.47194 * 59.78148 * 23 21 20 47 47 H 1.08997 * 109.46674 * 179.78279 * 27 25 24 48 48 H 1.09003 * 109.47091 * 299.78285 * 27 25 24 49 49 H 1.08996 * 109.47399 * 59.78024 * 27 25 24 50 50 H 1.09010 * 109.50335 * 297.54543 * 28 19 18 51 51 H 1.08993 * 109.50659 * 57.66922 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.2680 1.3450 -2.3371 7 1 4.6700 2.3374 -2.1963 8 6 4.0466 0.8613 -3.6192 9 7 2.9882 0.1200 -3.8693 10 14 5.2549 1.2562 -4.9880 11 1 4.7782 2.4434 -5.7419 12 1 6.5890 1.5443 -4.4028 13 1 5.3582 0.0946 -5.9074 14 6 4.1062 -0.8927 -1.3401 15 6 5.5292 -1.3027 -0.9556 16 1 6.2435 -0.7639 -1.5783 17 8 5.7613 -0.9860 0.4184 18 6 5.7014 -2.8081 -1.1682 19 7 7.0513 -3.2103 -0.7512 20 6 7.1800 -4.6746 -0.7244 21 6 8.5791 -5.0495 -0.2286 22 1 8.7084 -4.6990 0.7954 23 6 8.7471 -6.5695 -0.2744 24 8 9.5583 -4.4352 -1.0708 25 6 9.4624 -3.0090 -1.1198 26 1 9.6177 -2.5987 -0.1219 27 6 10.5270 -2.4578 -2.0703 28 6 8.0722 -2.6135 -1.6245 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8507 0.5684 0.8428 35 1 3.9785 2.1764 0.0902 36 1 2.3608 -0.0851 -3.1585 37 1 3.3963 -1.3630 -0.6598 38 1 3.8988 -1.2141 -2.3608 39 1 5.1605 -1.4314 1.0315 40 1 4.9623 -3.3457 -0.5743 41 1 5.5614 -3.0444 -2.2231 42 1 6.4312 -5.0935 -0.0521 43 1 7.0313 -5.0714 -1.7286 44 1 9.7447 -6.8355 0.0750 45 1 8.0006 -7.0370 0.3677 46 1 8.6157 -6.9189 -1.2985 47 1 10.4509 -1.3712 -2.1102 48 1 11.5165 -2.7398 -1.7104 49 1 10.3722 -2.8698 -3.0675 50 1 7.9377 -2.9775 -2.6432 51 1 7.9747 -1.5280 -1.6094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459546185.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:33 Heat of formation + Delta-G solvation = -140.535213 kcal Electronic energy + Delta-G solvation = -28966.141374 eV Core-core repulsion = 25093.537332 eV Total energy + Delta-G solvation = -3872.604042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.92871 -39.37605 -38.49917 -36.90137 -35.96454 -34.69591 -33.45047 -31.93110 -30.99171 -29.59333 -27.75939 -27.49021 -27.03604 -25.29869 -23.87200 -23.03846 -22.31883 -21.86992 -21.39024 -19.30404 -17.65177 -17.45526 -17.33806 -17.06336 -16.90172 -16.67980 -16.37185 -16.04465 -15.74401 -15.58216 -15.40785 -15.30188 -14.94287 -14.77342 -14.54874 -13.83626 -13.64686 -13.56887 -13.18193 -13.03922 -12.94880 -12.86253 -12.78977 -12.73294 -12.64531 -12.58879 -12.36686 -12.29870 -11.96268 -11.94899 -11.80428 -11.65793 -11.52913 -11.45618 -10.96498 -10.52412 -10.50628 -10.23958 -9.41019 -8.75996 -8.27161 -5.31110 1.53731 1.59710 1.78703 2.57204 2.63913 2.74003 3.00829 3.15797 3.51384 3.69206 3.78339 3.89098 3.91164 4.07614 4.12417 4.18281 4.26933 4.35087 4.40668 4.43238 4.45289 4.48834 4.52966 4.54798 4.60087 4.62074 4.66348 4.67525 4.70942 4.75406 4.76342 4.80272 4.95032 4.95840 4.99537 5.11588 5.17484 5.19275 5.28856 5.29785 5.36475 5.86333 5.96131 5.99598 6.24888 6.35663 6.41512 7.04172 7.15135 7.85784 8.33169 8.93703 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.004209 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.151769 B = 6651.148688 C = 7990.330406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.402 6.402 3 C 0.051 3.949 4 C 0.151 3.849 5 N -0.589 5.589 6 C -0.369 4.369 7 H 0.035 0.965 8 C -0.054 4.054 9 N -0.912 5.912 10 Si 1.090 2.910 11 H -0.284 1.284 12 H -0.279 1.279 13 H -0.289 1.289 14 C 0.132 3.868 15 C 0.115 3.885 16 H 0.062 0.938 17 O -0.552 6.552 18 C 0.036 3.964 19 N -0.527 5.527 20 C 0.022 3.978 21 C 0.088 3.912 22 H 0.066 0.934 23 C -0.137 4.137 24 O -0.395 6.395 25 C 0.096 3.904 26 H 0.065 0.935 27 C -0.141 4.141 28 C 0.024 3.976 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.059 0.941 33 H 0.014 0.986 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.258 0.742 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.372 0.628 40 H 0.091 0.909 41 H 0.025 0.975 42 H 0.100 0.900 43 H 0.030 0.970 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.058 0.942 50 H 0.027 0.973 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -9.859 9.531 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.321 6.321 3 C -0.028 4.028 4 C 0.025 3.975 5 N -0.309 5.309 6 C -0.499 4.499 7 H 0.053 0.947 8 C -0.254 4.254 9 N -0.551 5.551 10 Si 0.916 3.084 11 H -0.211 1.211 12 H -0.205 1.205 13 H -0.215 1.215 14 C 0.005 3.995 15 C 0.053 3.947 16 H 0.080 0.920 17 O -0.356 6.356 18 C -0.093 4.093 19 N -0.251 5.251 20 C -0.106 4.106 21 C 0.030 3.970 22 H 0.084 0.916 23 C -0.194 4.194 24 O -0.315 6.315 25 C 0.038 3.962 26 H 0.082 0.918 27 C -0.198 4.198 28 C -0.105 4.105 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.219 0.781 40 H 0.109 0.891 41 H 0.043 0.957 42 H 0.119 0.881 43 H 0.049 0.951 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.045 0.955 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.970 -9.785 8.040 14.964 hybrid contribution -1.849 0.407 0.616 1.991 sum 6.122 -9.378 8.656 14.154 Atomic orbital electron populations 1.22803 0.80905 1.03139 0.99744 1.87840 1.20329 1.28682 1.95294 1.23256 0.97384 0.84080 0.98078 1.21059 0.89646 0.97518 0.89265 1.43774 1.76573 1.01577 1.09003 1.19832 1.41671 1.01195 0.87197 0.94694 1.26721 0.98496 1.00237 0.99976 1.70873 1.08053 1.42281 1.33850 0.83220 0.75159 0.76163 0.73823 1.21102 1.20451 1.21542 1.21314 0.93863 0.84539 0.99833 1.22222 0.97722 0.91738 0.83050 0.91996 1.86528 1.60961 1.72398 1.15758 1.22719 0.90667 0.97399 0.98521 1.62203 1.02763 1.08719 1.51375 1.22942 0.99445 0.87570 1.00660 1.22285 0.85970 0.95030 0.93706 0.91553 1.21738 1.03679 0.90943 1.03084 1.87942 1.54869 1.19646 1.69002 1.22115 0.93369 0.81012 0.99674 0.91752 1.21750 0.98066 1.01283 0.98740 1.22824 0.93094 1.00397 0.94146 0.88751 0.92587 0.95777 0.92295 0.96802 0.91600 0.92849 0.93215 0.93237 0.94271 0.78055 0.89084 0.95708 0.88149 0.95130 0.91051 0.88917 0.92383 0.90155 0.90381 0.92262 0.95500 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 11.01 113.37 1.25 2.16 16 2 O -0.40 -15.58 9.54 -148.98 -1.42 -17.00 16 3 C 0.05 1.99 6.28 71.98 0.45 2.44 16 4 C 0.15 6.32 5.90 86.38 0.51 6.83 16 5 N -0.59 -28.80 2.22 -702.00 -1.56 -30.36 16 6 C -0.37 -20.53 9.30 84.04 0.78 -19.74 16 7 H 0.04 2.02 8.05 -2.91 -0.02 2.00 16 8 C -0.05 -3.02 4.53 84.86 0.38 -2.63 16 9 N -0.91 -54.35 12.39 21.65 0.27 -54.08 16 10 Si 1.09 51.08 30.05 68.60 2.06 53.14 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 14 C 0.13 5.95 4.49 86.38 0.39 6.34 16 15 C 0.11 4.49 3.04 30.60 0.09 4.58 16 16 H 0.06 2.85 6.60 -2.39 -0.02 2.83 16 17 O -0.55 -20.05 12.07 -148.98 -1.80 -21.85 16 18 C 0.04 1.18 4.63 86.30 0.40 1.58 16 19 N -0.53 -15.80 4.56 -895.19 -4.08 -19.88 16 20 C 0.02 0.54 4.93 86.31 0.43 0.96 16 21 C 0.09 1.98 3.43 30.62 0.10 2.08 16 22 H 0.07 1.48 8.14 -2.38 -0.02 1.47 16 23 C -0.14 -2.26 9.57 71.98 0.69 -1.57 16 24 O -0.39 -10.57 10.11 -148.98 -1.51 -12.08 16 25 C 0.10 2.56 3.43 30.63 0.10 2.67 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 27 C -0.14 -3.14 9.57 71.98 0.69 -2.45 16 28 C 0.02 0.74 4.72 86.31 0.41 1.15 16 29 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 2.51 7.19 -2.38 -0.02 2.49 16 35 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 36 H 0.26 15.86 7.71 -92.71 -0.72 15.15 16 37 H 0.05 2.13 7.13 -2.39 -0.02 2.11 16 38 H 0.04 2.06 5.65 -2.39 -0.01 2.05 16 39 H 0.37 10.99 9.05 -74.05 -0.67 10.32 16 40 H 0.09 2.65 8.04 -2.39 -0.02 2.63 16 41 H 0.02 0.90 8.12 -2.39 -0.02 0.88 16 42 H 0.10 2.09 8.09 -2.39 -0.02 2.07 16 43 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 51 H 0.07 2.57 6.41 -2.39 -0.02 2.55 16 Total: -1.00 -66.48 399.30 -1.09 -67.57 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.27 Total: 30.12 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 6.68 Total: 4.40 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -5.37 Total: -104.31 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -4.73 Total: -50.92 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.06 Total: 53.14 kcal Total: -66.48 -1.09 -67.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459546185.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.967 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds