Wall clock time and date at job start Fri Apr 10 2020 14:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47552 * 2 1 4 4 C 1.42899 * 114.00370 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.57013 * 29.84196 * 4 3 2 6 6 C 1.53084 * 109.52216 * 269.68466 * 4 3 2 7 7 O 1.42911 * 109.41417 * 297.70448 * 6 4 3 8 8 C 1.42905 * 114.09251 * 298.83869 * 7 6 4 9 9 C 1.53088 * 109.41738 * 61.16265 * 8 7 6 10 10 C 1.53175 * 109.52166 * 149.99851 * 4 3 2 11 11 H 1.09004 * 109.61687 * 182.83710 * 10 4 3 12 12 N 1.46901 * 109.54551 * 303.05751 * 10 4 3 13 13 C 1.46900 * 111.00208 * 204.56074 * 12 10 4 14 14 C 1.52999 * 109.47167 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.46991 * 304.99786 * 14 13 12 16 16 O 1.42897 * 109.47361 * 64.99773 * 14 13 12 17 17 C 1.53002 * 109.47316 * 184.99766 * 14 13 12 18 18 N 1.46898 * 109.47288 * 178.50890 * 17 14 13 19 19 C 1.46902 * 110.99785 * 164.01366 * 18 17 14 20 20 C 1.46902 * 110.99856 * 287.96571 * 18 17 14 21 21 C 1.50704 * 109.46916 * 170.00157 * 20 18 17 22 22 H 1.08002 * 119.99965 * 359.97438 * 21 20 18 23 23 C 1.37878 * 119.99747 * 179.97438 * 21 20 18 24 24 N 1.31510 * 120.00120 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99695 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46911 * 90.00370 * 25 23 21 27 27 H 1.48496 * 109.46991 * 209.99959 * 25 23 21 28 28 H 1.48493 * 109.47266 * 330.00522 * 25 23 21 29 29 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47105 * 300.00357 * 1 2 3 31 31 H 1.09007 * 109.46976 * 59.99742 * 1 2 3 32 32 H 1.09003 * 109.47105 * 239.99643 * 2 1 3 33 33 H 1.08997 * 109.47044 * 119.99717 * 2 1 3 34 34 H 1.09000 * 109.48492 * 177.72299 * 6 4 3 35 35 H 1.08996 * 109.48159 * 57.68124 * 6 4 3 36 36 H 1.09000 * 109.48200 * 301.17743 * 8 7 6 37 37 H 1.09004 * 109.47906 * 181.14210 * 8 7 6 38 38 H 1.08997 * 109.52639 * 182.48539 * 9 8 7 39 39 H 1.08997 * 109.52396 * 62.29079 * 9 8 7 40 40 H 1.00909 * 110.99820 * 328.50981 * 12 10 4 41 41 H 1.08997 * 109.47262 * 59.99885 * 13 12 10 42 42 H 1.09001 * 109.47081 * 299.99882 * 13 12 10 43 43 H 0.96701 * 113.99771 * 59.99417 * 16 14 13 44 44 H 1.09004 * 109.47133 * 298.51276 * 17 14 13 45 45 H 1.09004 * 109.46774 * 58.51023 * 17 14 13 46 46 H 1.08994 * 109.47278 * 65.48313 * 19 18 17 47 47 H 1.08999 * 109.46671 * 185.48459 * 19 18 17 48 48 H 1.09002 * 109.46707 * 305.48132 * 19 18 17 49 49 H 1.09006 * 109.47092 * 289.99702 * 20 18 17 50 50 H 1.08999 * 109.47403 * 49.99772 * 20 18 17 51 51 H 0.97003 * 120.00260 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8651 0.6009 -0.5120 6 6 3.9409 1.5081 1.4420 7 8 3.4162 2.6671 2.0930 8 6 3.8070 3.9022 1.4896 9 6 3.2916 3.9504 0.0489 10 6 3.8422 2.7469 -0.7224 11 1 4.9295 2.8095 -0.7680 12 7 3.2927 2.7433 -2.0848 13 6 4.0888 3.5979 -2.9759 14 6 3.4875 3.5681 -4.3824 15 1 3.4121 2.5356 -4.7235 16 8 2.1860 4.1575 -4.3567 17 6 4.3855 4.3565 -5.3379 18 7 3.8271 4.2980 -6.6953 19 6 4.4242 5.3286 -7.5551 20 6 4.0000 2.9609 -7.2785 21 6 3.2080 2.8642 -8.5570 22 1 2.6333 3.7112 -8.9016 23 6 3.2172 1.6944 -9.2868 24 7 3.9165 0.6629 -8.8669 25 14 2.2349 1.5744 -10.8711 26 1 3.0830 2.0015 -12.0129 27 1 1.7978 0.1703 -11.0773 28 1 1.0432 2.4560 -10.7828 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0300 1.5534 1.4414 35 1 3.6144 0.6140 1.9730 36 1 4.8943 3.9788 1.4895 37 1 3.3840 4.7328 2.0549 38 1 3.6262 4.8721 -0.4271 39 1 2.2023 3.9146 0.0503 40 1 3.2294 1.8035 -2.4467 41 1 5.1142 3.2300 -3.0116 42 1 4.0827 4.6207 -2.5993 43 1 2.1770 5.0784 -4.0619 44 1 4.4397 5.3952 -5.0117 45 1 5.3856 3.9229 -5.3374 46 1 5.4847 5.1176 -7.6923 47 1 3.9250 5.3273 -8.5240 48 1 4.3059 6.3058 -7.0867 49 1 5.0555 2.7910 -7.4913 50 1 3.6458 2.2085 -6.5738 51 1 3.9227 -0.1602 -9.3801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569568761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:00 Heat of formation + Delta-G solvation = -135.284209 kcal Electronic energy + Delta-G solvation = -27952.348972 eV Core-core repulsion = 24079.972631 eV Total energy + Delta-G solvation = -3872.376341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.16185 -38.06044 -37.30627 -36.03977 -34.98497 -32.46941 -31.98703 -31.45085 -29.99446 -29.03010 -27.28892 -25.87797 -24.02865 -23.78420 -23.10462 -22.61662 -21.45710 -20.31255 -19.92954 -16.93407 -16.85199 -16.59917 -16.49261 -15.94684 -15.87820 -15.29288 -15.10117 -14.77736 -14.64829 -14.46341 -14.20478 -14.01645 -13.63395 -13.29259 -13.17651 -12.97052 -12.59217 -12.55026 -12.27006 -12.05814 -11.92551 -11.76487 -11.46804 -11.37083 -11.33714 -11.13108 -10.91310 -10.81642 -10.72078 -10.64815 -10.61500 -10.32030 -10.18536 -9.73261 -9.50735 -9.27120 -9.08134 -8.40907 -8.36602 -7.18478 -6.00441 -4.00449 3.33936 3.37220 3.40039 3.45774 3.68205 3.94747 4.35097 4.45555 4.59050 4.63367 4.78878 4.93043 4.94886 4.95747 4.98900 5.08576 5.16329 5.18814 5.23851 5.29930 5.32019 5.35234 5.40112 5.47995 5.62164 5.62594 5.67075 5.71230 5.76283 5.79364 5.83906 6.04844 6.07295 6.10865 6.24673 6.34395 6.52306 6.72638 6.84592 6.99616 7.18332 7.29317 7.31957 7.35162 7.82753 8.10491 8.20231 8.31009 8.58241 9.06743 9.63356 11.10783 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.002839 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.799276 B = 9858.540797 C =11002.015819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.350 6.350 4 C 0.055 3.945 5 H 0.067 0.933 6 C 0.043 3.957 7 O -0.371 6.371 8 C 0.060 3.940 9 C -0.138 4.138 10 C 0.091 3.909 11 H 0.051 0.949 12 N -0.662 5.662 13 C 0.028 3.972 14 C 0.120 3.880 15 H 0.100 0.900 16 O -0.529 6.529 17 C 0.026 3.974 18 N -0.530 5.530 19 C 0.040 3.960 20 C 0.193 3.807 21 C -0.502 4.502 22 H 0.063 0.937 23 C 0.054 3.946 24 N -0.901 5.901 25 Si 0.898 3.102 26 H -0.282 1.282 27 H -0.287 1.287 28 H -0.272 1.272 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.344 0.656 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.360 0.640 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.009 0.991 47 H 0.073 0.927 48 H 0.043 0.957 49 H -0.013 1.013 50 H 0.031 0.969 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 2.974 21.999 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.269 6.269 4 C -0.004 4.004 5 H 0.085 0.915 6 C -0.035 4.035 7 O -0.290 6.290 8 C -0.017 4.017 9 C -0.177 4.177 10 C -0.019 4.019 11 H 0.069 0.931 12 N -0.293 5.293 13 C -0.102 4.102 14 C 0.059 3.941 15 H 0.117 0.883 16 O -0.331 6.331 17 C -0.104 4.104 18 N -0.255 5.255 19 C -0.108 4.108 20 C 0.068 3.932 21 C -0.541 4.541 22 H 0.081 0.919 23 C -0.147 4.147 24 N -0.541 5.541 25 Si 0.726 3.274 26 H -0.208 1.208 27 H -0.213 1.213 28 H -0.197 1.197 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.163 0.837 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.205 0.795 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.028 0.972 47 H 0.092 0.908 48 H 0.061 0.939 49 H 0.005 0.995 50 H 0.049 0.951 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.704 2.914 22.043 22.246 hybrid contribution 1.971 -0.681 -1.168 2.390 sum 2.675 2.233 20.875 21.164 Atomic orbital electron populations 1.21700 0.93569 1.01991 1.03388 1.22520 0.96002 0.84176 0.99456 1.88092 1.18546 1.25496 1.94728 1.22891 0.83787 0.97867 0.95900 0.91536 1.23051 0.97514 0.89734 0.93164 1.87958 1.74055 1.13498 1.53444 1.22640 0.98341 0.86844 0.93885 1.22126 1.03704 0.97556 0.94265 1.21642 0.96062 0.94391 0.89835 0.93145 1.60268 1.52772 1.15998 1.00290 1.22803 0.94659 0.98239 0.94538 1.21841 0.83508 0.98590 0.90139 0.88271 1.86701 1.27179 1.29426 1.89817 1.22687 0.95860 0.99151 0.92680 1.62033 1.56032 1.07484 0.99903 1.22195 0.96320 0.93686 0.98643 1.19770 0.94841 0.83711 0.94888 1.21160 1.28353 0.98669 1.05920 0.91872 1.24982 0.95828 0.95673 0.98210 1.69952 1.41597 1.03313 1.39281 0.86497 0.80435 0.77233 0.83279 1.20839 1.21273 1.19688 0.91405 0.92020 0.91367 0.93430 0.94051 0.92504 0.88724 0.93673 0.88678 0.91237 0.89171 0.83706 0.94935 0.90971 0.79509 0.92144 0.95443 0.97240 0.90790 0.93863 0.99524 0.95111 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.55 6.47 37.16 0.24 0.79 16 3 O -0.35 -4.22 9.21 -42.73 -0.39 -4.62 16 4 C 0.05 0.55 2.30 -26.60 -0.06 0.49 16 5 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 6 C 0.04 0.39 6.49 37.20 0.24 0.63 16 7 O -0.37 -4.09 10.70 -42.73 -0.46 -4.55 16 8 C 0.06 0.54 6.84 37.20 0.25 0.80 16 9 C -0.14 -1.42 5.47 -26.59 -0.15 -1.57 16 10 C 0.09 0.96 2.36 -67.53 -0.16 0.80 16 11 H 0.05 0.49 7.81 -51.93 -0.41 0.09 16 12 N -0.66 -8.39 6.07 -106.53 -0.65 -9.04 16 13 C 0.03 0.35 5.12 -3.82 -0.02 0.33 16 14 C 0.12 1.97 3.17 -26.73 -0.08 1.89 16 15 H 0.10 1.94 6.55 -51.93 -0.34 1.60 16 16 O -0.53 -9.39 13.18 -35.23 -0.46 -9.85 16 17 C 0.03 0.45 4.63 -3.82 -0.02 0.43 16 18 N -0.53 -11.57 4.60 -244.36 -1.12 -12.70 16 19 C 0.04 0.79 9.32 60.07 0.56 1.35 16 20 C 0.19 5.08 4.57 -4.97 -0.02 5.06 16 21 C -0.50 -14.41 8.54 -34.44 -0.29 -14.71 16 22 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 23 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 24 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 25 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.04 0.35 7.86 -51.93 -0.41 -0.06 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.66 7.55 -51.93 -0.39 0.27 16 39 H 0.09 1.15 7.83 -51.93 -0.41 0.74 16 40 H 0.34 4.58 8.37 -39.29 -0.33 4.26 16 41 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 42 H 0.07 0.83 7.51 -51.93 -0.39 0.44 16 43 H 0.36 5.02 9.05 45.56 0.41 5.43 16 44 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16 45 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 46 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 47 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 48 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 49 H -0.01 -0.36 8.11 -51.93 -0.42 -0.79 16 50 H 0.03 0.86 6.38 -51.93 -0.33 0.53 16 51 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -33.00 400.92 -9.28 -42.28 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.73 Total: 4.98 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -1.04 Total: -48.00 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -1.31 Total: -19.02 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.00 -9.28 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569568761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.007 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds