Wall clock time and date at job start Fri Apr 10 2020 14:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47552 * 2 1 4 4 C 1.42899 * 114.00370 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.57013 * 29.84196 * 4 3 2 6 6 C 1.53084 * 109.52216 * 269.68466 * 4 3 2 7 7 O 1.42911 * 109.41417 * 297.70448 * 6 4 3 8 8 C 1.42905 * 114.09251 * 298.83869 * 7 6 4 9 9 C 1.53088 * 109.41738 * 61.16265 * 8 7 6 10 10 C 1.53175 * 109.52166 * 149.99851 * 4 3 2 11 11 H 1.09004 * 109.61687 * 182.83710 * 10 4 3 12 12 N 1.46901 * 109.54551 * 303.05751 * 10 4 3 13 13 C 1.46900 * 111.00208 * 204.56074 * 12 10 4 14 14 C 1.52999 * 109.47167 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.46991 * 304.99786 * 14 13 12 16 16 O 1.42897 * 109.47361 * 64.99773 * 14 13 12 17 17 C 1.53002 * 109.47316 * 184.99766 * 14 13 12 18 18 N 1.46898 * 109.47288 * 178.50890 * 17 14 13 19 19 C 1.46902 * 110.99785 * 164.01366 * 18 17 14 20 20 C 1.46902 * 110.99856 * 287.96571 * 18 17 14 21 21 C 1.50704 * 109.46916 * 170.00157 * 20 18 17 22 22 H 1.08002 * 119.99965 * 359.97438 * 21 20 18 23 23 C 1.37878 * 119.99747 * 179.97438 * 21 20 18 24 24 N 1.31510 * 120.00120 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99695 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46911 * 90.00370 * 25 23 21 27 27 H 1.48496 * 109.46991 * 209.99959 * 25 23 21 28 28 H 1.48493 * 109.47266 * 330.00522 * 25 23 21 29 29 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47105 * 300.00357 * 1 2 3 31 31 H 1.09007 * 109.46976 * 59.99742 * 1 2 3 32 32 H 1.09003 * 109.47105 * 239.99643 * 2 1 3 33 33 H 1.08997 * 109.47044 * 119.99717 * 2 1 3 34 34 H 1.09000 * 109.48492 * 177.72299 * 6 4 3 35 35 H 1.08996 * 109.48159 * 57.68124 * 6 4 3 36 36 H 1.09000 * 109.48200 * 301.17743 * 8 7 6 37 37 H 1.09004 * 109.47906 * 181.14210 * 8 7 6 38 38 H 1.08997 * 109.52639 * 182.48539 * 9 8 7 39 39 H 1.08997 * 109.52396 * 62.29079 * 9 8 7 40 40 H 1.00909 * 110.99820 * 328.50981 * 12 10 4 41 41 H 1.08997 * 109.47262 * 59.99885 * 13 12 10 42 42 H 1.09001 * 109.47081 * 299.99882 * 13 12 10 43 43 H 0.96701 * 113.99771 * 59.99417 * 16 14 13 44 44 H 1.09004 * 109.47133 * 298.51276 * 17 14 13 45 45 H 1.09004 * 109.46774 * 58.51023 * 17 14 13 46 46 H 1.08994 * 109.47278 * 65.48313 * 19 18 17 47 47 H 1.08999 * 109.46671 * 185.48459 * 19 18 17 48 48 H 1.09002 * 109.46707 * 305.48132 * 19 18 17 49 49 H 1.09006 * 109.47092 * 289.99702 * 20 18 17 50 50 H 1.08999 * 109.47403 * 49.99772 * 20 18 17 51 51 H 0.97003 * 120.00260 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8651 0.6009 -0.5120 6 6 3.9409 1.5081 1.4420 7 8 3.4162 2.6671 2.0930 8 6 3.8070 3.9022 1.4896 9 6 3.2916 3.9504 0.0489 10 6 3.8422 2.7469 -0.7224 11 1 4.9295 2.8095 -0.7680 12 7 3.2927 2.7433 -2.0848 13 6 4.0888 3.5979 -2.9759 14 6 3.4875 3.5681 -4.3824 15 1 3.4121 2.5356 -4.7235 16 8 2.1860 4.1575 -4.3567 17 6 4.3855 4.3565 -5.3379 18 7 3.8271 4.2980 -6.6953 19 6 4.4242 5.3286 -7.5551 20 6 4.0000 2.9609 -7.2785 21 6 3.2080 2.8642 -8.5570 22 1 2.6333 3.7112 -8.9016 23 6 3.2172 1.6944 -9.2868 24 7 3.9165 0.6629 -8.8669 25 14 2.2349 1.5744 -10.8711 26 1 3.0830 2.0015 -12.0129 27 1 1.7978 0.1703 -11.0773 28 1 1.0432 2.4560 -10.7828 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0300 1.5534 1.4414 35 1 3.6144 0.6140 1.9730 36 1 4.8943 3.9788 1.4895 37 1 3.3840 4.7328 2.0549 38 1 3.6262 4.8721 -0.4271 39 1 2.2023 3.9146 0.0503 40 1 3.2294 1.8035 -2.4467 41 1 5.1142 3.2300 -3.0116 42 1 4.0827 4.6207 -2.5993 43 1 2.1770 5.0784 -4.0619 44 1 4.4397 5.3952 -5.0117 45 1 5.3856 3.9229 -5.3374 46 1 5.4847 5.1176 -7.6923 47 1 3.9250 5.3273 -8.5240 48 1 4.3059 6.3058 -7.0867 49 1 5.0555 2.7910 -7.4913 50 1 3.6458 2.2085 -6.5738 51 1 3.9227 -0.1602 -9.3801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569568761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:59 Heat of formation + Delta-G solvation = -162.851032 kcal Electronic energy + Delta-G solvation = -27953.544359 eV Core-core repulsion = 24079.972631 eV Total energy + Delta-G solvation = -3873.571728 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.94875 -39.44405 -38.09570 -37.41354 -36.23542 -34.60692 -32.92342 -32.24339 -30.93532 -30.21909 -29.27319 -27.13784 -25.55944 -24.53718 -24.31288 -23.52674 -22.72316 -21.72141 -20.99621 -18.61527 -17.82655 -17.70479 -17.45093 -17.05103 -16.94800 -16.59700 -16.36144 -16.13648 -15.86240 -15.55621 -15.38230 -15.21561 -14.95375 -14.66883 -14.29951 -13.98257 -13.95148 -13.65255 -13.40748 -13.19897 -13.07031 -12.96715 -12.86364 -12.60534 -12.58772 -12.54101 -12.32871 -12.24391 -12.17438 -12.11122 -11.59911 -11.50384 -11.42186 -11.30886 -10.93736 -10.69623 -10.60817 -10.05309 -9.32446 -8.94701 -8.21245 -6.30226 1.39096 1.41251 1.53017 2.39897 2.63491 2.82660 3.08520 3.11747 3.41504 3.59112 3.76129 3.85247 3.88440 3.95605 4.15061 4.20469 4.23220 4.24513 4.30961 4.37642 4.42310 4.46559 4.50102 4.51054 4.59406 4.59804 4.63108 4.70991 4.75086 4.77220 4.87083 4.89692 5.04976 5.05975 5.06935 5.11517 5.24007 5.28648 5.30351 5.39777 5.64556 6.02416 6.07119 6.19813 6.30010 6.35221 6.44693 6.65477 6.85429 7.14301 7.39045 8.89918 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.002839 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.799276 B = 9858.540797 C =11002.015819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.375 6.375 4 C 0.051 3.949 5 H 0.074 0.926 6 C 0.043 3.957 7 O -0.394 6.394 8 C 0.060 3.940 9 C -0.132 4.132 10 C 0.089 3.911 11 H 0.066 0.934 12 N -0.675 5.675 13 C 0.043 3.957 14 C 0.127 3.873 15 H 0.057 0.943 16 O -0.553 6.553 17 C 0.027 3.973 18 N -0.544 5.544 19 C 0.042 3.958 20 C 0.211 3.789 21 C -0.523 4.523 22 H 0.059 0.941 23 C 0.001 3.999 24 N -0.935 5.935 25 Si 0.968 3.032 26 H -0.270 1.270 27 H -0.281 1.281 28 H -0.267 1.267 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.336 0.664 41 H 0.041 0.959 42 H 0.093 0.907 43 H 0.377 0.623 44 H 0.097 0.903 45 H 0.027 0.973 46 H 0.008 0.992 47 H 0.054 0.946 48 H 0.083 0.917 49 H -0.042 1.042 50 H 0.004 0.996 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 4.078 22.792 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.295 6.295 4 C -0.008 4.008 5 H 0.092 0.908 6 C -0.034 4.034 7 O -0.312 6.312 8 C -0.017 4.017 9 C -0.170 4.170 10 C -0.020 4.020 11 H 0.084 0.916 12 N -0.306 5.306 13 C -0.087 4.087 14 C 0.067 3.933 15 H 0.075 0.925 16 O -0.358 6.358 17 C -0.102 4.102 18 N -0.267 5.267 19 C -0.107 4.107 20 C 0.084 3.916 21 C -0.561 4.561 22 H 0.078 0.922 23 C -0.197 4.197 24 N -0.575 5.575 25 Si 0.792 3.208 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.192 1.192 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.154 0.846 41 H 0.059 0.941 42 H 0.111 0.889 43 H 0.225 0.775 44 H 0.116 0.884 45 H 0.045 0.955 46 H 0.027 0.973 47 H 0.072 0.928 48 H 0.101 0.899 49 H -0.024 1.024 50 H 0.022 0.978 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.243 4.051 22.857 23.246 hybrid contribution 1.801 -0.994 -1.369 2.471 sum 3.045 3.057 21.488 21.917 Atomic orbital electron populations 1.21704 0.93551 1.02913 1.02266 1.22630 0.96108 0.83639 1.00171 1.88059 1.19839 1.26644 1.94930 1.23019 0.83023 0.97921 0.96848 0.90762 1.23149 0.98592 0.89519 0.92146 1.87927 1.74745 1.14483 1.54087 1.22740 0.99500 0.86557 0.92872 1.22053 1.01768 0.97813 0.95401 1.21738 0.96808 0.94976 0.88506 0.91581 1.60276 1.53456 1.15548 1.01327 1.22601 0.94486 0.99493 0.92083 1.21648 0.83268 0.96132 0.92300 0.92487 1.86652 1.27982 1.30963 1.90207 1.22802 0.95586 1.01513 0.90296 1.61931 1.57372 1.05460 1.01984 1.22215 0.95737 0.94781 0.97928 1.19371 0.92459 0.85910 0.93824 1.21484 1.28726 0.98828 1.07081 0.92232 1.25901 0.96794 0.95216 1.01807 1.70074 1.42792 1.03878 1.40780 0.85404 0.78976 0.77415 0.78978 1.19587 1.20659 1.19157 0.89499 0.92213 0.93306 0.93605 0.92324 0.90472 0.87974 0.91724 0.87725 0.90280 0.92157 0.84617 0.94062 0.88854 0.77542 0.88427 0.95510 0.97329 0.92761 0.89865 1.02408 0.97779 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 10.28 71.98 0.74 -2.06 16 2 C 0.05 1.00 6.47 71.98 0.47 1.46 16 3 O -0.38 -9.05 9.21 -141.81 -1.31 -10.35 16 4 C 0.05 0.97 2.30 30.68 0.07 1.04 16 5 H 0.07 1.27 7.79 -2.39 -0.02 1.25 16 6 C 0.04 0.70 6.49 72.01 0.47 1.17 16 7 O -0.39 -8.05 10.70 -141.81 -1.52 -9.57 16 8 C 0.06 0.96 6.84 72.01 0.49 1.45 16 9 C -0.13 -2.52 5.47 30.68 0.17 -2.35 16 10 C 0.09 1.76 2.36 45.03 0.11 1.87 16 11 H 0.07 1.12 7.81 -2.38 -0.02 1.10 16 12 N -0.68 -16.83 6.07 -490.95 -2.98 -19.81 16 13 C 0.04 1.03 5.12 86.30 0.44 1.48 16 14 C 0.13 4.18 3.17 30.59 0.10 4.28 16 15 H 0.06 2.37 6.55 -2.39 -0.02 2.35 16 16 O -0.55 -19.49 13.18 -148.98 -1.96 -21.45 16 17 C 0.03 0.91 4.63 86.30 0.40 1.31 16 18 N -0.54 -23.71 4.60 -927.02 -4.27 -27.98 16 19 C 0.04 1.59 9.32 127.69 1.19 2.78 16 20 C 0.21 11.50 4.57 85.56 0.39 11.89 16 21 C -0.52 -30.66 8.54 25.60 0.22 -30.44 16 22 H 0.06 3.46 7.10 -2.91 -0.02 3.44 16 23 C 0.00 0.03 5.46 84.66 0.46 0.49 16 24 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 25 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 28 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.05 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.06 0.93 7.86 -2.39 -0.02 0.91 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 1.46 7.86 -2.39 -0.02 1.44 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.08 1.32 7.55 -2.39 -0.02 1.31 16 39 H 0.06 1.53 7.83 -2.39 -0.02 1.51 16 40 H 0.34 9.18 8.37 -89.69 -0.75 8.43 16 41 H 0.04 0.93 8.06 -2.39 -0.02 0.91 16 42 H 0.09 1.86 7.51 -2.39 -0.02 1.84 16 43 H 0.38 9.95 9.05 -74.06 -0.67 9.28 16 44 H 0.10 2.57 7.88 -2.38 -0.02 2.55 16 45 H 0.03 0.92 8.05 -2.38 -0.02 0.90 16 46 H 0.01 0.31 8.13 -2.39 -0.02 0.29 16 47 H 0.05 2.26 6.90 -2.39 -0.02 2.24 16 48 H 0.08 2.50 7.97 -2.39 -0.02 2.48 16 49 H -0.04 -2.45 8.11 -2.38 -0.02 -2.47 16 50 H 0.00 0.25 6.38 -2.39 -0.02 0.23 16 51 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -73.03 400.92 -4.53 -77.56 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.52 Total: 26.65 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 5.71 Total: -5.63 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -6.96 Total: -104.70 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -4.79 Total: -41.37 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.03 -4.53 -77.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569568761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.290 kcal (2) G-P(sol) polarization free energy of solvation -73.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds