Wall clock time and date at job start Fri Apr 10 2020 14:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47015 * 2 1 4 4 C 1.42903 * 113.99938 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.57426 * 29.84119 * 4 3 2 6 6 C 1.53094 * 109.51967 * 269.68460 * 4 3 2 7 7 O 1.42898 * 109.41211 * 297.70080 * 6 4 3 8 8 C 1.42897 * 114.10001 * 298.84343 * 7 6 4 9 9 C 1.53089 * 109.41656 * 61.16248 * 8 7 6 10 10 C 1.53175 * 109.51981 * 149.99823 * 4 3 2 11 11 H 1.09004 * 109.53853 * 182.79349 * 10 4 3 12 12 N 1.46901 * 109.54266 * 303.05483 * 10 4 3 13 13 C 1.46907 * 110.99668 * 204.55708 * 12 10 4 14 14 C 1.53004 * 109.46770 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.46888 * 60.00261 * 14 13 12 16 16 O 1.42897 * 109.47122 * 300.00180 * 14 13 12 17 17 C 1.52995 * 109.46869 * 180.02562 * 14 13 12 18 18 N 1.46902 * 109.46947 * 184.99985 * 17 14 13 19 19 C 1.46896 * 110.99859 * 66.04856 * 18 17 14 20 20 C 1.46899 * 110.99760 * 189.99737 * 18 17 14 21 21 C 1.50707 * 109.47212 * 170.00052 * 20 18 17 22 22 H 1.08000 * 119.99230 * 0.02562 * 21 20 18 23 23 C 1.37877 * 120.00295 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99544 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99740 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47377 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47187 * 120.00065 * 25 23 21 28 28 H 1.48499 * 109.46832 * 239.99351 * 25 23 21 29 29 H 1.08994 * 109.47407 * 300.00142 * 1 2 3 30 30 H 1.09002 * 109.46978 * 60.00353 * 1 2 3 31 31 H 1.09007 * 109.47073 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47435 * 239.99613 * 2 1 3 33 33 H 1.09002 * 109.46978 * 119.99647 * 2 1 3 34 34 H 1.09006 * 109.47665 * 177.71771 * 6 4 3 35 35 H 1.08993 * 109.47955 * 57.68527 * 6 4 3 36 36 H 1.09002 * 109.48425 * 301.17758 * 8 7 6 37 37 H 1.09002 * 109.48369 * 181.14801 * 8 7 6 38 38 H 1.08997 * 109.52675 * 182.48845 * 9 8 7 39 39 H 1.08995 * 109.52428 * 62.29514 * 9 8 7 40 40 H 1.00898 * 111.00131 * 328.50887 * 12 10 4 41 41 H 1.09001 * 109.47253 * 300.00510 * 13 12 10 42 42 H 1.08997 * 109.46688 * 60.00647 * 13 12 10 43 43 H 0.96698 * 114.00138 * 300.00089 * 16 14 13 44 44 H 1.09002 * 109.47284 * 305.00046 * 17 14 13 45 45 H 1.09004 * 109.47595 * 64.99701 * 17 14 13 46 46 H 1.09004 * 109.47320 * 59.99810 * 19 18 17 47 47 H 1.08999 * 109.47151 * 179.97438 * 19 18 17 48 48 H 1.09005 * 109.47439 * 299.99862 * 19 18 17 49 49 H 1.08999 * 109.47593 * 290.00092 * 20 18 17 50 50 H 1.09003 * 109.47323 * 50.00402 * 20 18 17 51 51 H 0.96998 * 119.99678 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8655 0.6008 -0.5102 6 6 3.9396 1.5087 1.4437 7 8 3.4144 2.6678 2.0937 8 6 3.8055 3.9027 1.4904 9 6 3.2914 3.9504 0.0493 10 6 3.8427 2.7468 -0.7213 11 1 4.9301 2.8085 -0.7646 12 7 3.2943 2.7427 -2.0842 13 6 4.0912 3.5971 -2.9748 14 6 3.4903 3.5678 -4.3816 15 1 2.4650 3.9359 -4.3464 16 8 3.4983 2.2268 -4.8751 17 6 4.3205 4.4571 -5.3093 18 7 3.6769 4.5246 -6.6281 19 6 2.3829 5.2152 -6.5477 20 6 4.5576 5.1694 -7.6112 21 6 3.9762 5.0033 -8.9917 22 1 3.0453 4.4721 -9.1251 23 6 4.6325 5.5293 -10.0841 24 7 5.7658 6.1765 -9.9214 25 14 3.9114 5.3239 -11.7950 26 1 2.6384 4.5644 -11.7077 27 1 3.6499 6.6610 -12.3858 28 1 4.8724 4.5837 -12.6516 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.0287 1.5539 1.4439 35 1 3.6127 0.6147 1.9746 36 1 4.8929 3.9793 1.4912 37 1 3.3821 4.7334 2.0551 38 1 3.6263 4.8720 -0.4267 39 1 2.2020 3.9146 0.0498 40 1 3.2314 1.8028 -2.4457 41 1 4.0847 4.6201 -2.5985 42 1 5.1166 3.2292 -3.0095 43 1 4.3802 1.8343 -4.9333 44 1 4.3887 5.4595 -4.8866 45 1 5.3214 4.0384 -5.4144 46 1 2.5350 6.2303 -6.1806 47 1 1.9283 5.2515 -7.5376 48 1 1.7254 4.6768 -5.8650 49 1 4.6454 6.2308 -7.3793 50 1 5.5438 4.7066 -7.5743 51 1 6.2274 6.5469 -10.6899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569568762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:03 Heat of formation + Delta-G solvation = -137.745584 kcal Electronic energy + Delta-G solvation = -27655.623022 eV Core-core repulsion = 23783.139947 eV Total energy + Delta-G solvation = -3872.483074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.25802 -38.25798 -37.40659 -36.10261 -35.12467 -32.53489 -32.06651 -31.51152 -30.10852 -29.16253 -27.08908 -26.07667 -24.36983 -23.85656 -23.15785 -22.63930 -21.25965 -20.38719 -20.10305 -17.03047 -16.97648 -16.73029 -16.45007 -16.12034 -15.81280 -15.76131 -15.09843 -14.89885 -14.69537 -14.62536 -14.25268 -14.02654 -13.68383 -13.47839 -13.27919 -12.97366 -12.72456 -12.52478 -12.43324 -12.20004 -11.93290 -11.87474 -11.58008 -11.46294 -11.31509 -11.10913 -10.89278 -10.87259 -10.80186 -10.71799 -10.65820 -10.27186 -10.26691 -10.01738 -9.65010 -9.38013 -9.09050 -8.52544 -8.43589 -7.18530 -6.02514 -4.03217 3.27188 3.31677 3.38931 3.44821 3.59866 3.84728 4.26318 4.43176 4.49981 4.54372 4.66602 4.80861 4.85106 4.87847 4.90854 4.99737 5.06629 5.08452 5.12646 5.14671 5.26283 5.29240 5.32348 5.37671 5.49914 5.54802 5.55743 5.65125 5.71191 5.72662 5.75458 5.94153 6.06758 6.15053 6.22115 6.34914 6.42987 6.75709 6.80302 6.89155 7.07859 7.27100 7.28683 7.33545 7.81313 7.95102 8.10546 8.21529 8.56330 9.05305 9.61053 11.08589 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.002287 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.266971 B =12237.909197 C =12920.861354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.351 6.351 4 C 0.056 3.944 5 H 0.066 0.934 6 C 0.043 3.957 7 O -0.371 6.371 8 C 0.060 3.940 9 C -0.140 4.140 10 C 0.091 3.909 11 H 0.052 0.948 12 N -0.667 5.667 13 C 0.027 3.973 14 C 0.115 3.885 15 H 0.105 0.895 16 O -0.546 6.546 17 C 0.026 3.974 18 N -0.530 5.530 19 C 0.036 3.964 20 C 0.192 3.808 21 C -0.504 4.504 22 H 0.065 0.935 23 C 0.053 3.947 24 N -0.901 5.901 25 Si 0.898 3.102 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.284 1.284 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.348 0.652 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.365 0.635 44 H 0.028 0.972 45 H 0.068 0.932 46 H 0.008 0.992 47 H 0.074 0.926 48 H 0.048 0.952 49 H -0.011 1.011 50 H 0.027 0.973 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -10.078 24.965 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.270 6.270 4 C -0.003 4.003 5 H 0.084 0.916 6 C -0.035 4.035 7 O -0.289 6.289 8 C -0.017 4.017 9 C -0.178 4.178 10 C -0.019 4.019 11 H 0.070 0.930 12 N -0.300 5.300 13 C -0.103 4.103 14 C 0.055 3.945 15 H 0.122 0.878 16 O -0.349 6.349 17 C -0.104 4.104 18 N -0.254 5.254 19 C -0.113 4.113 20 C 0.067 3.933 21 C -0.542 4.542 22 H 0.083 0.917 23 C -0.148 4.148 24 N -0.541 5.541 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.211 1.211 28 H -0.210 1.210 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.168 0.832 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.211 0.789 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.027 0.973 47 H 0.093 0.907 48 H 0.067 0.933 49 H 0.007 0.993 50 H 0.045 0.955 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.407 -9.724 24.947 27.135 hybrid contribution 1.826 0.065 -1.073 2.119 sum -2.581 -9.658 23.874 25.883 Atomic orbital electron populations 1.21702 0.93591 1.02001 1.03361 1.22517 0.95963 0.84193 0.99456 1.88090 1.18659 1.25490 1.94743 1.22896 0.83676 0.97802 0.95971 0.91578 1.23051 0.97572 0.89788 0.93103 1.87958 1.73979 1.13495 1.53500 1.22642 0.98451 0.86829 0.93794 1.22141 1.03624 0.97662 0.94419 1.21638 0.96217 0.94395 0.89679 0.92987 1.60269 1.52751 1.16592 1.00356 1.22767 0.94465 0.98670 0.94423 1.21990 1.00940 0.83047 0.88516 0.87754 1.86620 1.33035 1.27409 1.87840 1.22710 0.97979 0.97838 0.91901 1.62028 1.04406 1.54200 1.04754 1.22262 0.92353 0.94549 1.02106 1.19748 0.91913 0.91773 0.89860 1.21216 1.08022 1.34256 0.90734 0.91724 1.25002 0.95018 0.95349 0.99400 1.69971 1.16237 1.37334 1.30538 0.86433 0.79227 0.77695 0.84040 1.19596 1.21141 1.21025 0.91949 0.91500 0.91381 0.93490 0.93992 0.92459 0.88720 0.93559 0.88590 0.91078 0.89256 0.83210 0.90359 0.95218 0.78943 0.95363 0.91400 0.97318 0.90693 0.93333 0.99310 0.95455 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.46 6.47 37.16 0.24 0.70 16 3 O -0.35 -3.73 9.21 -42.73 -0.39 -4.12 16 4 C 0.06 0.49 2.30 -26.59 -0.06 0.42 16 5 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16 6 C 0.04 0.34 6.49 37.21 0.24 0.58 16 7 O -0.37 -3.82 10.69 -42.73 -0.46 -4.27 16 8 C 0.06 0.51 6.84 37.20 0.25 0.76 16 9 C -0.14 -1.35 5.47 -26.59 -0.15 -1.50 16 10 C 0.09 0.86 2.36 -67.53 -0.16 0.70 16 11 H 0.05 0.45 7.81 -51.93 -0.41 0.05 16 12 N -0.67 -7.36 6.13 -106.52 -0.65 -8.01 16 13 C 0.03 0.31 5.19 -3.82 -0.02 0.29 16 14 C 0.11 1.66 3.19 -26.73 -0.09 1.57 16 15 H 0.10 1.66 6.34 -51.93 -0.33 1.34 16 16 O -0.55 -8.21 12.62 -35.23 -0.44 -8.66 16 17 C 0.03 0.44 4.59 -3.83 -0.02 0.43 16 18 N -0.53 -11.59 4.70 -244.36 -1.15 -12.74 16 19 C 0.04 0.72 9.14 60.06 0.55 1.27 16 20 C 0.19 5.07 4.72 -4.97 -0.02 5.04 16 21 C -0.50 -14.37 8.46 -34.44 -0.29 -14.66 16 22 H 0.06 1.85 7.12 -52.49 -0.37 1.47 16 23 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 24 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 25 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.04 0.30 7.86 -51.93 -0.41 -0.11 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.66 7.55 -51.93 -0.39 0.26 16 39 H 0.09 1.06 7.83 -51.93 -0.41 0.65 16 40 H 0.35 3.91 7.76 -39.29 -0.30 3.60 16 41 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 42 H 0.03 0.31 8.06 -51.93 -0.42 -0.11 16 43 H 0.36 4.38 9.04 45.56 0.41 4.79 16 44 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 45 H 0.07 1.16 7.93 -51.93 -0.41 0.74 16 46 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 47 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 48 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 49 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 50 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 51 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -32.55 399.63 -9.28 -41.83 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.69 Total: 3.07 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 0.77 Total: -3.75 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -1.06 Total: -46.99 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.30 Total: -17.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.55 -9.28 -41.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569568762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.916 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds