Wall clock time and date at job start Fri Apr 10 2020 14:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47015 * 2 1 4 4 C 1.42903 * 113.99938 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.57426 * 29.84119 * 4 3 2 6 6 C 1.53094 * 109.51967 * 269.68460 * 4 3 2 7 7 O 1.42898 * 109.41211 * 297.70080 * 6 4 3 8 8 C 1.42897 * 114.10001 * 298.84343 * 7 6 4 9 9 C 1.53089 * 109.41656 * 61.16248 * 8 7 6 10 10 C 1.53175 * 109.51981 * 149.99823 * 4 3 2 11 11 H 1.09004 * 109.53853 * 182.79349 * 10 4 3 12 12 N 1.46901 * 109.54266 * 303.05483 * 10 4 3 13 13 C 1.46907 * 110.99668 * 204.55708 * 12 10 4 14 14 C 1.53004 * 109.46770 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.46888 * 60.00261 * 14 13 12 16 16 O 1.42897 * 109.47122 * 300.00180 * 14 13 12 17 17 C 1.52995 * 109.46869 * 180.02562 * 14 13 12 18 18 N 1.46902 * 109.46947 * 184.99985 * 17 14 13 19 19 C 1.46896 * 110.99859 * 66.04856 * 18 17 14 20 20 C 1.46899 * 110.99760 * 189.99737 * 18 17 14 21 21 C 1.50707 * 109.47212 * 170.00052 * 20 18 17 22 22 H 1.08000 * 119.99230 * 0.02562 * 21 20 18 23 23 C 1.37877 * 120.00295 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99544 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99740 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47377 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47187 * 120.00065 * 25 23 21 28 28 H 1.48499 * 109.46832 * 239.99351 * 25 23 21 29 29 H 1.08994 * 109.47407 * 300.00142 * 1 2 3 30 30 H 1.09002 * 109.46978 * 60.00353 * 1 2 3 31 31 H 1.09007 * 109.47073 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47435 * 239.99613 * 2 1 3 33 33 H 1.09002 * 109.46978 * 119.99647 * 2 1 3 34 34 H 1.09006 * 109.47665 * 177.71771 * 6 4 3 35 35 H 1.08993 * 109.47955 * 57.68527 * 6 4 3 36 36 H 1.09002 * 109.48425 * 301.17758 * 8 7 6 37 37 H 1.09002 * 109.48369 * 181.14801 * 8 7 6 38 38 H 1.08997 * 109.52675 * 182.48845 * 9 8 7 39 39 H 1.08995 * 109.52428 * 62.29514 * 9 8 7 40 40 H 1.00898 * 111.00131 * 328.50887 * 12 10 4 41 41 H 1.09001 * 109.47253 * 300.00510 * 13 12 10 42 42 H 1.08997 * 109.46688 * 60.00647 * 13 12 10 43 43 H 0.96698 * 114.00138 * 300.00089 * 16 14 13 44 44 H 1.09002 * 109.47284 * 305.00046 * 17 14 13 45 45 H 1.09004 * 109.47595 * 64.99701 * 17 14 13 46 46 H 1.09004 * 109.47320 * 59.99810 * 19 18 17 47 47 H 1.08999 * 109.47151 * 179.97438 * 19 18 17 48 48 H 1.09005 * 109.47439 * 299.99862 * 19 18 17 49 49 H 1.08999 * 109.47593 * 290.00092 * 20 18 17 50 50 H 1.09003 * 109.47323 * 50.00402 * 20 18 17 51 51 H 0.96998 * 119.99678 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8655 0.6008 -0.5102 6 6 3.9396 1.5087 1.4437 7 8 3.4144 2.6678 2.0937 8 6 3.8055 3.9027 1.4904 9 6 3.2914 3.9504 0.0493 10 6 3.8427 2.7468 -0.7213 11 1 4.9301 2.8085 -0.7646 12 7 3.2943 2.7427 -2.0842 13 6 4.0912 3.5971 -2.9748 14 6 3.4903 3.5678 -4.3816 15 1 2.4650 3.9359 -4.3464 16 8 3.4983 2.2268 -4.8751 17 6 4.3205 4.4571 -5.3093 18 7 3.6769 4.5246 -6.6281 19 6 2.3829 5.2152 -6.5477 20 6 4.5576 5.1694 -7.6112 21 6 3.9762 5.0033 -8.9917 22 1 3.0453 4.4721 -9.1251 23 6 4.6325 5.5293 -10.0841 24 7 5.7658 6.1765 -9.9214 25 14 3.9114 5.3239 -11.7950 26 1 2.6384 4.5644 -11.7077 27 1 3.6499 6.6610 -12.3858 28 1 4.8724 4.5837 -12.6516 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.0287 1.5539 1.4439 35 1 3.6127 0.6147 1.9746 36 1 4.8929 3.9793 1.4912 37 1 3.3821 4.7334 2.0551 38 1 3.6263 4.8720 -0.4267 39 1 2.2020 3.9146 0.0498 40 1 3.2314 1.8028 -2.4457 41 1 4.0847 4.6201 -2.5985 42 1 5.1166 3.2292 -3.0095 43 1 4.3802 1.8343 -4.9333 44 1 4.3887 5.4595 -4.8866 45 1 5.3214 4.0384 -5.4144 46 1 2.5350 6.2303 -6.1806 47 1 1.9283 5.2515 -7.5376 48 1 1.7254 4.6768 -5.8650 49 1 4.6454 6.2308 -7.3793 50 1 5.5438 4.7066 -7.5743 51 1 6.2274 6.5469 -10.6899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569568762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:03 Heat of formation + Delta-G solvation = -164.535806 kcal Electronic energy + Delta-G solvation = -27656.784733 eV Core-core repulsion = 23783.139947 eV Total energy + Delta-G solvation = -3873.644786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95389 -39.52925 -38.08821 -37.47605 -36.23057 -34.63205 -32.88387 -32.22340 -31.00532 -30.29689 -28.96411 -27.46716 -25.71179 -24.53872 -24.18589 -23.47243 -22.54341 -21.83513 -21.00553 -18.58239 -17.81670 -17.69064 -17.41008 -17.24797 -16.85262 -16.72854 -16.53025 -16.05841 -15.81358 -15.56170 -15.45402 -15.33505 -14.88640 -14.64467 -14.32893 -13.99427 -13.82330 -13.65906 -13.40391 -13.28945 -13.17300 -12.98224 -12.78646 -12.61130 -12.57724 -12.53012 -12.39683 -12.25292 -12.09664 -12.01845 -11.65596 -11.57926 -11.43222 -11.37724 -10.93489 -10.75418 -10.63421 -10.04754 -9.34731 -8.97384 -8.21987 -6.31600 1.40179 1.40696 1.54829 2.39484 2.65183 2.81624 3.07793 3.10745 3.40817 3.61497 3.67192 3.86130 3.88522 3.99018 4.12043 4.19685 4.22937 4.24506 4.25053 4.38677 4.40771 4.46717 4.48693 4.52749 4.55166 4.62246 4.68138 4.71989 4.72383 4.81873 4.85841 4.91964 5.03641 5.05321 5.08471 5.14995 5.16602 5.30510 5.31280 5.37239 5.64193 6.00226 6.05179 6.19327 6.30850 6.41094 6.47721 6.62769 6.84613 6.95288 7.38173 8.89271 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.002287 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.266971 B =12237.909197 C =12920.861354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.377 6.377 4 C 0.054 3.946 5 H 0.081 0.919 6 C 0.040 3.960 7 O -0.394 6.394 8 C 0.061 3.939 9 C -0.136 4.136 10 C 0.090 3.910 11 H 0.067 0.933 12 N -0.676 5.676 13 C 0.040 3.960 14 C 0.130 3.870 15 H 0.090 0.910 16 O -0.560 6.560 17 C 0.025 3.975 18 N -0.540 5.540 19 C 0.040 3.960 20 C 0.207 3.793 21 C -0.522 4.522 22 H 0.060 0.940 23 C 0.001 3.999 24 N -0.935 5.935 25 Si 0.969 3.031 26 H -0.265 1.265 27 H -0.278 1.278 28 H -0.277 1.277 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.347 0.653 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.379 0.621 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.011 0.989 47 H 0.055 0.945 48 H 0.074 0.926 49 H -0.039 1.039 50 H 0.005 0.995 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.973 -11.180 25.600 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 O -0.297 6.297 4 C -0.004 4.004 5 H 0.099 0.901 6 C -0.037 4.037 7 O -0.313 6.313 8 C -0.016 4.016 9 C -0.174 4.174 10 C -0.020 4.020 11 H 0.084 0.916 12 N -0.309 5.309 13 C -0.090 4.090 14 C 0.070 3.930 15 H 0.108 0.892 16 O -0.365 6.365 17 C -0.104 4.104 18 N -0.264 5.264 19 C -0.108 4.108 20 C 0.081 3.919 21 C -0.561 4.561 22 H 0.078 0.922 23 C -0.197 4.197 24 N -0.575 5.575 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.202 1.202 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.167 0.833 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.226 0.774 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.029 0.971 47 H 0.073 0.927 48 H 0.093 0.907 49 H -0.021 1.021 50 H 0.023 0.977 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.285 -10.839 25.608 28.136 hybrid contribution 1.788 0.388 -1.210 2.193 sum -2.498 -10.451 24.398 26.660 Atomic orbital electron populations 1.21710 0.93660 1.02915 1.02222 1.22640 0.95992 0.83538 1.00344 1.88063 1.19843 1.26818 1.94928 1.22983 0.83014 0.97867 0.96567 0.90094 1.23194 0.98625 0.89414 0.92475 1.87925 1.74673 1.14469 1.54217 1.22706 0.99432 0.86616 0.92884 1.22076 1.01851 0.98005 0.95514 1.21704 0.96880 0.94794 0.88624 0.91561 1.60224 1.53172 1.16468 1.01028 1.22554 0.94912 0.99135 0.92437 1.21754 0.99622 0.82134 0.89491 0.89191 1.86582 1.34454 1.27458 1.88046 1.22825 0.98435 0.98892 0.90219 1.61943 1.04471 1.53576 1.06412 1.22221 0.91861 0.95075 1.01624 1.19402 0.91672 0.90078 0.90743 1.21496 1.08034 1.34433 0.92094 0.92177 1.25908 0.95303 0.94776 1.03702 1.70084 1.17467 1.38011 1.31977 0.85333 0.78623 0.77964 0.78700 1.18933 1.20332 1.20226 0.92608 0.93042 0.89468 0.92982 0.92588 0.90558 0.87872 0.91848 0.88012 0.90871 0.92015 0.83303 0.90121 0.93725 0.77354 0.94970 0.91214 0.97054 0.92651 0.90745 1.02141 0.97676 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.05 0.79 6.47 71.98 0.47 1.25 16 3 O -0.38 -7.66 9.21 -141.81 -1.31 -8.97 16 4 C 0.05 0.85 2.30 30.68 0.07 0.92 16 5 H 0.08 1.00 7.79 -2.38 -0.02 0.98 16 6 C 0.04 0.56 6.49 72.01 0.47 1.03 16 7 O -0.39 -7.53 10.69 -141.81 -1.52 -9.05 16 8 C 0.06 0.94 6.84 72.01 0.49 1.43 16 9 C -0.14 -2.48 5.47 30.68 0.17 -2.31 16 10 C 0.09 1.53 2.36 45.03 0.11 1.63 16 11 H 0.07 0.96 7.81 -2.38 -0.02 0.94 16 12 N -0.68 -13.88 6.13 -490.93 -3.01 -16.89 16 13 C 0.04 0.83 5.19 86.30 0.45 1.28 16 14 C 0.13 3.58 3.19 30.59 0.10 3.68 16 15 H 0.09 2.77 6.34 -2.39 -0.02 2.76 16 16 O -0.56 -16.08 12.62 -148.98 -1.88 -17.96 16 17 C 0.03 0.87 4.59 86.30 0.40 1.27 16 18 N -0.54 -23.75 4.70 -927.03 -4.36 -28.11 16 19 C 0.04 1.63 9.14 127.69 1.17 2.80 16 20 C 0.21 11.21 4.72 85.56 0.40 11.62 16 21 C -0.52 -30.22 8.46 25.60 0.22 -30.00 16 22 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 23 C 0.00 0.05 5.46 84.65 0.46 0.52 16 24 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 25 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.06 0.69 7.86 -2.39 -0.02 0.67 16 34 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.10 1.22 7.86 -2.39 -0.02 1.20 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.26 7.55 -2.39 -0.02 1.25 16 39 H 0.06 1.47 7.83 -2.39 -0.02 1.45 16 40 H 0.35 7.22 7.76 -89.70 -0.70 6.53 16 41 H 0.08 1.68 7.51 -2.39 -0.02 1.66 16 42 H 0.04 0.82 8.06 -2.39 -0.02 0.80 16 43 H 0.38 8.47 9.04 -74.06 -0.67 7.80 16 44 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 45 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 46 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.05 2.42 6.76 -2.39 -0.02 2.41 16 48 H 0.07 2.60 6.37 -2.38 -0.02 2.58 16 49 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 50 H 0.01 0.30 7.93 -2.39 -0.02 0.28 16 51 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -70.19 399.63 -4.52 -74.71 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -0.46 Total: 22.03 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 5.70 Total: -6.38 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -7.08 Total: -101.28 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -4.70 Total: -35.98 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -70.19 -4.52 -74.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569568762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.829 kcal (2) G-P(sol) polarization free energy of solvation -70.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds