Wall clock time and date at job start Fri Apr 10 2020 14:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46661 * 2 1 4 4 C 1.42900 * 113.99527 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.85283 * 18.81142 * 4 3 2 6 6 C 1.53777 * 113.61858 * 247.49921 * 4 3 2 7 7 C 1.53785 * 87.08241 * 270.88618 * 6 4 3 8 8 H 1.09002 * 113.61570 * 220.01842 * 7 6 4 9 9 N 1.46905 * 113.69113 * 89.12283 * 7 6 4 10 10 C 1.46903 * 110.99622 * 105.93557 * 9 7 6 11 11 C 1.53005 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46861 * 60.00159 * 11 10 9 13 13 O 1.42895 * 109.47093 * 300.00609 * 11 10 9 14 14 C 1.52996 * 109.47351 * 179.97438 * 11 10 9 15 15 N 1.46892 * 109.47483 * 185.00079 * 14 11 10 16 16 C 1.46901 * 110.99969 * 66.04590 * 15 14 11 17 17 C 1.46892 * 111.00269 * 190.00212 * 15 14 11 18 18 C 1.50702 * 109.47568 * 170.00015 * 17 15 14 19 19 H 1.08004 * 119.99678 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00333 * 179.97438 * 18 17 15 21 21 N 1.31511 * 120.00121 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47316 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46839 * 119.99978 * 22 20 18 25 25 H 1.48493 * 109.47223 * 240.00064 * 22 20 18 26 26 C 1.53781 * 87.08241 * 334.56547 * 7 6 4 27 27 H 1.08997 * 113.61673 * 270.88717 * 26 7 6 28 28 O 1.42902 * 113.61606 * 139.97513 * 26 7 6 29 29 C 1.42897 * 113.99300 * 150.00026 * 28 26 7 30 30 H 1.09001 * 109.47624 * 300.00122 * 1 2 3 31 31 H 1.09006 * 109.47087 * 60.00535 * 1 2 3 32 32 H 1.09005 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47371 * 240.00356 * 2 1 3 34 34 H 1.09005 * 109.46690 * 119.99825 * 2 1 3 35 35 H 1.08999 * 113.61947 * 156.34044 * 6 4 3 36 36 H 1.08997 * 113.61348 * 25.43259 * 6 4 3 37 37 H 1.00897 * 110.99581 * 341.98671 * 9 7 6 38 38 H 1.09000 * 109.47373 * 299.99883 * 10 9 7 39 39 H 1.08995 * 109.47013 * 60.00530 * 10 9 7 40 40 H 0.96703 * 113.99761 * 299.99666 * 13 11 10 41 41 H 1.09003 * 109.47009 * 305.00677 * 14 11 10 42 42 H 1.09007 * 109.46572 * 64.99911 * 14 11 10 43 43 H 1.09003 * 109.46975 * 60.00358 * 16 15 14 44 44 H 1.09002 * 109.47191 * 179.97438 * 16 15 14 45 45 H 1.08993 * 109.47310 * 300.00353 * 16 15 14 46 46 H 1.09000 * 109.47470 * 290.00044 * 17 15 14 47 47 H 1.09006 * 109.47215 * 50.00299 * 17 15 14 48 48 H 0.96997 * 120.00135 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.47664 * 300.00176 * 29 28 26 50 50 H 1.09001 * 109.47330 * 60.01077 * 29 28 26 51 51 H 1.09003 * 109.46875 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9280 0.5457 -0.3230 6 6 4.0018 2.0465 1.3024 7 6 3.8390 3.4328 0.6570 8 1 4.6667 4.1110 0.8645 9 7 2.5256 4.0453 0.8975 10 6 2.6237 5.1319 1.8812 11 6 1.2394 5.7443 2.1044 12 1 0.5589 4.9781 2.4760 13 8 0.7433 6.2634 0.8690 14 6 1.3414 6.8756 3.1294 15 7 -0.0030 7.3838 3.4332 16 6 -0.8091 6.3639 4.1174 17 6 0.0677 8.6182 4.2262 18 6 -1.3022 9.2408 4.3098 19 1 -2.1414 8.7669 3.8222 20 6 -1.4843 10.4152 5.0087 21 7 -0.4625 10.9925 5.6021 22 14 -3.1823 11.1871 5.1117 23 1 -4.1536 10.3483 4.3645 24 1 -3.5992 11.2782 6.5341 25 1 -3.1442 12.5480 4.5189 26 6 3.9488 2.7253 -0.7039 27 1 4.9723 2.6344 -1.0675 28 8 3.0515 3.2391 -1.6903 29 6 3.5381 3.1335 -3.0298 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 5.0399 1.7703 1.4874 36 1 3.3603 1.8907 2.1697 37 1 1.8519 3.3532 1.1892 38 1 3.0025 4.7360 2.8234 39 1 3.3038 5.8982 1.5094 40 1 1.3002 6.9514 0.4795 41 1 1.8022 6.4983 4.0423 42 1 1.9509 7.6818 2.7211 43 1 -0.3225 6.0825 5.0513 44 1 -1.7992 6.7665 4.3310 45 1 -0.9034 5.4862 3.4781 46 1 0.4228 8.3855 5.2301 47 1 0.7558 9.3170 3.7502 48 1 -0.5907 11.8185 6.0941 49 1 4.4709 3.6898 -3.1225 50 1 3.7147 2.0852 -3.2706 51 1 2.8000 3.5454 -3.7180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578620209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:38 Heat of formation + Delta-G solvation = -128.352001 kcal Electronic energy + Delta-G solvation = -27683.441997 eV Core-core repulsion = 23811.366259 eV Total energy + Delta-G solvation = -3872.075738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07313 -39.40364 -37.94769 -37.35587 -36.60511 -34.61221 -34.09102 -31.69410 -30.69679 -28.96255 -27.80079 -27.38285 -25.48841 -25.31200 -24.32771 -23.60663 -22.66806 -21.80809 -20.34765 -18.57434 -18.22133 -17.75253 -17.09441 -16.81708 -16.70221 -16.64086 -16.45405 -15.97901 -15.86794 -15.56614 -15.46854 -14.96112 -14.70017 -14.36212 -14.21126 -13.92466 -13.86152 -13.72834 -13.46261 -13.24237 -13.19566 -12.87160 -12.69060 -12.59855 -12.57940 -12.50077 -12.38307 -12.14755 -11.98362 -11.92087 -11.82504 -11.59967 -11.49880 -11.35786 -10.66836 -10.62472 -10.40178 -10.02571 -9.08568 -8.94493 -8.20889 -6.30616 1.40507 1.41536 1.55689 2.40431 2.53347 2.99958 3.11531 3.22920 3.43275 3.60688 3.68388 3.76894 3.90151 3.98767 4.12759 4.22180 4.23989 4.25760 4.34585 4.42210 4.46675 4.52009 4.52822 4.57804 4.59892 4.65670 4.68632 4.71733 4.77271 4.81605 4.89970 4.93353 4.99238 5.05940 5.06522 5.11893 5.16342 5.20544 5.31238 5.31701 5.65238 6.04768 6.16785 6.31525 6.33046 6.57687 6.65167 6.70352 6.85680 7.08199 7.39095 8.90442 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019925 B = 0.002416 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.945016 B =11588.824012 C =11984.420453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.369 6.369 4 C 0.047 3.953 5 H 0.088 0.912 6 C -0.183 4.183 7 C 0.067 3.933 8 H 0.092 0.908 9 N -0.650 5.650 10 C 0.040 3.960 11 C 0.131 3.869 12 H 0.084 0.916 13 O -0.553 6.553 14 C 0.027 3.973 15 N -0.541 5.541 16 C 0.041 3.959 17 C 0.208 3.792 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.001 3.999 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.277 1.277 26 C 0.063 3.937 27 H 0.120 0.880 28 O -0.366 6.366 29 C 0.023 3.977 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.345 0.655 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.376 0.624 41 H 0.032 0.968 42 H 0.068 0.932 43 H 0.012 0.988 44 H 0.055 0.945 45 H 0.073 0.927 46 H -0.038 1.038 47 H 0.004 0.996 48 H 0.265 0.735 49 H 0.048 0.952 50 H 0.045 0.955 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.161 -24.836 -13.232 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.288 6.288 4 C -0.011 4.011 5 H 0.106 0.894 6 C -0.222 4.222 7 C -0.045 4.045 8 H 0.110 0.890 9 N -0.281 5.281 10 C -0.090 4.090 11 C 0.070 3.930 12 H 0.102 0.898 13 O -0.358 6.358 14 C -0.102 4.102 15 N -0.265 5.265 16 C -0.107 4.107 17 C 0.081 3.919 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.197 4.197 21 N -0.576 5.576 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.202 1.202 26 C 0.003 3.997 27 H 0.138 0.862 28 O -0.284 6.284 29 C -0.074 4.074 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.089 0.911 37 H 0.165 0.835 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.224 0.776 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.030 0.970 44 H 0.074 0.926 45 H 0.092 0.908 46 H -0.021 1.021 47 H 0.022 0.978 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.205 -24.341 -13.966 30.602 hybrid contribution 0.678 0.169 1.809 1.939 sum 12.883 -24.172 -12.157 29.967 Atomic orbital electron populations 1.21741 0.93725 1.02941 1.02332 1.22643 0.95765 0.83459 1.00410 1.88005 1.19599 1.26775 1.94428 1.23779 0.82410 0.98619 0.96342 0.89421 1.24043 1.03123 0.97488 0.97555 1.23014 0.92070 0.94528 0.94849 0.89025 1.59965 1.07265 1.13599 1.47243 1.22559 0.96936 0.95144 0.94324 1.21702 0.94375 0.93198 0.83684 0.89823 1.86569 1.53522 1.58655 1.37040 1.22818 0.90796 0.98251 0.98352 1.61917 1.12970 1.05021 1.46632 1.22216 0.98254 0.94655 0.95599 1.19399 0.96431 0.87021 0.89011 1.21499 0.95071 1.07822 1.31700 0.92201 1.25914 1.01339 0.97449 0.94980 1.70084 1.32406 1.19658 1.35424 0.85324 0.79112 0.78203 0.77924 1.18945 1.20213 1.20245 1.24509 0.93992 0.92861 0.88316 0.86242 1.88210 1.43142 1.82067 1.14938 1.22901 0.99960 1.00437 0.84085 0.92826 0.92930 0.89308 0.92766 0.92721 0.86336 0.91099 0.83452 0.94073 0.90327 0.77617 0.94967 0.91336 0.96966 0.92607 0.90834 1.02060 0.97781 0.92647 0.93319 0.93649 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.28 71.98 0.74 -1.60 16 2 C 0.05 0.82 6.50 71.98 0.47 1.29 16 3 O -0.37 -7.72 8.46 -134.57 -1.14 -8.86 16 4 C 0.05 0.74 4.32 31.12 0.13 0.87 16 5 H 0.09 0.98 7.87 -2.39 -0.02 0.96 16 6 C -0.18 -2.52 7.47 31.12 0.23 -2.29 16 7 C 0.07 1.22 4.21 45.44 0.19 1.41 16 8 H 0.09 1.49 7.88 -2.39 -0.02 1.47 16 9 N -0.65 -15.82 5.91 -488.82 -2.89 -18.70 16 10 C 0.04 0.98 5.20 86.30 0.45 1.43 16 11 C 0.13 4.02 3.13 30.59 0.10 4.11 16 12 H 0.08 2.69 6.33 -2.39 -0.02 2.67 16 13 O -0.55 -19.26 13.15 -148.98 -1.96 -21.22 16 14 C 0.03 0.98 4.60 86.30 0.40 1.38 16 15 N -0.54 -24.78 4.70 -927.08 -4.36 -29.14 16 16 C 0.04 1.70 9.14 127.69 1.17 2.86 16 17 C 0.21 11.53 4.72 85.56 0.40 11.93 16 18 C -0.52 -30.88 8.46 25.60 0.22 -30.66 16 19 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 20 C 0.00 0.05 5.46 84.65 0.46 0.52 16 21 N -0.94 -57.43 13.29 21.45 0.28 -57.15 16 22 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 26 C 0.06 1.06 4.19 31.12 0.13 1.19 16 27 H 0.12 1.29 7.87 -2.39 -0.02 1.28 16 28 O -0.37 -8.54 9.89 -134.57 -1.33 -9.87 16 29 C 0.02 0.37 10.85 113.37 1.23 1.60 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 37 H 0.35 9.18 7.00 -89.70 -0.63 8.56 16 38 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.82 8.13 -2.39 -0.02 1.80 16 40 H 0.38 11.22 9.05 -74.06 -0.67 10.55 16 41 H 0.03 1.13 8.12 -2.39 -0.02 1.11 16 42 H 0.07 2.49 7.93 -2.38 -0.02 2.47 16 43 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.06 2.49 6.76 -2.39 -0.02 2.48 16 45 H 0.07 2.63 6.37 -2.39 -0.02 2.62 16 46 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 47 H 0.00 0.24 7.93 -2.38 -0.02 0.22 16 48 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 49 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -73.09 407.23 -3.45 -76.53 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.40 Total: 26.70 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 6.32 Total: -5.95 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -6.96 Total: -105.00 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -4.43 Total: -39.95 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.09 -3.45 -76.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578620209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.819 kcal (2) G-P(sol) polarization free energy of solvation -73.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds