Wall clock time and date at job start Fri Apr 10 2020 14:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00379 * 2 1 4 4 C 1.52998 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47518 * 175.00177 * 4 3 2 6 6 C 1.52998 * 109.46967 * 54.99893 * 4 3 2 7 7 O 1.42900 * 109.47208 * 294.99934 * 4 3 2 8 8 C 1.42900 * 114.00167 * 209.99588 * 7 4 3 9 9 C 1.52998 * 109.47082 * 179.97438 * 8 7 4 10 10 H 1.08999 * 109.47606 * 305.00378 * 9 8 7 11 11 O 1.42903 * 109.47051 * 65.00662 * 9 8 7 12 12 C 1.53005 * 109.47298 * 185.00061 * 9 8 7 13 13 N 1.46890 * 109.47481 * 180.02562 * 12 9 8 14 14 C 1.46895 * 111.00179 * 180.02562 * 13 12 9 15 15 C 1.53041 * 109.45970 * 275.06496 * 14 13 12 16 16 C 1.53193 * 109.31273 * 178.61271 * 15 14 13 17 17 N 1.46920 * 108.77507 * 54.64145 * 16 15 14 18 18 C 1.36938 * 120.63317 * 126.41247 * 17 16 15 19 19 H 1.08000 * 120.00027 * 331.82963 * 18 17 16 20 20 C 1.38808 * 119.99940 * 151.82264 * 18 17 16 21 21 N 1.31622 * 120.00275 * 343.07050 * 20 18 17 22 22 Si 1.86809 * 119.99790 * 163.06935 * 20 18 17 23 23 H 1.48500 * 109.46808 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46997 * 120.00489 * 22 20 18 25 25 H 1.48500 * 109.47072 * 240.00261 * 22 20 18 26 26 C 1.46925 * 118.73796 * 306.38370 * 17 16 15 27 27 C 1.53041 * 109.46449 * 155.00123 * 14 13 12 28 28 H 1.09000 * 109.47759 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47336 * 300.00077 * 1 2 3 30 30 H 1.09001 * 109.46728 * 59.99686 * 1 2 3 31 31 H 1.09002 * 109.47392 * 59.99998 * 3 2 1 32 32 H 1.09000 * 109.47371 * 299.99954 * 3 2 1 33 33 H 1.09004 * 109.47147 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47478 * 299.99721 * 6 4 3 35 35 H 1.08999 * 109.46818 * 60.00557 * 6 4 3 36 36 H 1.09005 * 109.46574 * 60.00408 * 8 7 4 37 37 H 1.08991 * 109.47420 * 300.00238 * 8 7 4 38 38 H 0.96693 * 114.00084 * 59.99342 * 11 9 8 39 39 H 1.08999 * 109.47051 * 300.00657 * 12 9 8 40 40 H 1.09010 * 109.46938 * 60.00193 * 12 9 8 41 41 H 1.00906 * 110.99965 * 303.95534 * 13 12 9 42 42 H 1.08999 * 109.46391 * 35.02974 * 14 13 12 43 43 H 1.08992 * 109.49940 * 298.56550 * 15 14 13 44 44 H 1.09010 * 109.49340 * 58.66671 * 15 14 13 45 45 H 1.08999 * 109.58620 * 294.84655 * 16 15 14 46 46 H 1.09007 * 109.70099 * 174.50045 * 16 15 14 47 47 H 0.97002 * 120.00170 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.59351 * 293.83025 * 26 17 16 49 49 H 1.08995 * 109.70449 * 173.46419 * 26 17 16 50 50 H 1.09004 * 109.49635 * 301.33511 * 27 14 13 51 51 H 1.09001 * 109.50009 * 61.39447 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.9786 2.1763 -0.0889 6 6 3.9789 0.3192 -1.1806 7 8 3.9648 0.5795 1.2220 8 6 5.2614 0.9976 1.6533 9 6 5.6156 0.2909 2.9633 10 1 4.8325 0.4750 3.6988 11 8 5.7297 -1.1144 2.7306 12 6 6.9470 0.8302 3.4900 13 7 7.2874 0.1513 4.7474 14 6 8.5625 0.6453 5.2840 15 6 9.7190 -0.1174 4.6336 16 6 11.0480 0.4240 5.1698 17 7 11.0292 0.3548 6.6373 18 6 12.0342 -0.2781 7.3189 19 1 12.5763 -1.0876 6.8528 20 6 12.3564 0.1210 8.6087 21 7 11.9505 1.2902 9.0567 22 14 13.3659 -1.0016 9.7090 23 1 13.6955 -2.2491 8.9740 24 1 14.6213 -0.3120 10.1009 25 1 12.5838 -1.3356 10.9263 26 6 9.9119 0.9781 7.3597 27 6 8.5956 0.4305 6.7989 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 5.0656 0.2334 -1.1805 34 1 3.5359 -0.6727 -1.0911 35 1 3.6515 0.7808 -2.1122 36 1 5.2614 2.0762 1.8113 37 1 5.9978 0.7420 0.8915 38 1 6.4092 -1.3523 2.0852 39 1 7.7301 0.6461 2.7545 40 1 6.8601 1.9023 3.6675 41 1 6.5467 0.2527 5.4251 42 1 8.6607 1.7087 5.0659 43 1 9.6354 -1.1776 4.8721 44 1 9.6811 0.0171 3.5525 45 1 11.1745 1.4597 4.8544 46 1 11.8717 -0.1780 4.7860 47 1 12.1753 1.5689 9.9582 48 1 9.9457 2.0589 7.2228 49 1 9.9831 0.7417 8.4213 50 1 7.7580 0.9548 7.2591 51 1 8.5219 -0.6349 7.0170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345606003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:11 Heat of formation + Delta-G solvation = -124.800473 kcal Electronic energy + Delta-G solvation = -27023.396762 eV Core-core repulsion = 23151.475029 eV Total energy + Delta-G solvation = -3871.921732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.34149 -38.41349 -37.68420 -36.68581 -34.69506 -32.51211 -32.14070 -30.53810 -29.72502 -28.64536 -27.73495 -26.08425 -25.30974 -23.91035 -22.33112 -21.72287 -21.36772 -21.11899 -19.02877 -17.62771 -16.90164 -16.69901 -16.56499 -16.32474 -15.87895 -15.41641 -15.05995 -14.90513 -14.67650 -14.21121 -13.89071 -13.86414 -13.57205 -13.45490 -13.08418 -12.98591 -12.68949 -12.50860 -12.30731 -12.16208 -12.08353 -12.00752 -11.52056 -11.34854 -11.25850 -11.04591 -10.82301 -10.72487 -10.68948 -10.28847 -10.21512 -10.05900 -9.96700 -9.88962 -9.84714 -9.54744 -9.40371 -8.44743 -8.12723 -6.64078 -5.76297 -3.18269 3.17758 3.39535 3.41281 3.47410 3.50135 4.23746 4.41540 4.50027 4.52733 4.64872 4.75977 4.79458 4.89533 4.95696 4.97800 5.00481 5.05201 5.14570 5.22561 5.26882 5.32788 5.39935 5.41410 5.47048 5.52437 5.56203 5.61931 5.73130 5.94972 5.95679 5.98580 6.18094 6.37086 6.50839 6.55597 6.65801 6.69801 6.74340 6.84875 6.97254 7.07362 7.36239 7.40003 7.60518 7.68226 7.75898 7.83285 8.48310 9.24461 9.88093 10.45006 11.32457 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.039459 B = 0.001904 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.422543 B =14700.730654 C =14842.490204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.065 3.935 4 C 0.086 3.914 5 H 0.071 0.929 6 C -0.170 4.170 7 O -0.360 6.360 8 C 0.029 3.971 9 C 0.116 3.884 10 H 0.101 0.899 11 O -0.537 6.537 12 C 0.031 3.969 13 N -0.677 5.677 14 C 0.096 3.904 15 C -0.116 4.116 16 C 0.144 3.856 17 N -0.592 5.592 18 C -0.249 4.249 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.174 3.826 27 C -0.141 4.141 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.370 0.630 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.338 0.662 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.013 0.987 46 H 0.054 0.946 47 H 0.253 0.747 48 H 0.015 0.985 49 H 0.089 0.911 50 H 0.045 0.955 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.093 2.685 -19.740 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C -0.012 4.012 4 C 0.028 3.972 5 H 0.089 0.911 6 C -0.228 4.228 7 O -0.279 6.279 8 C -0.049 4.049 9 C 0.056 3.944 10 H 0.119 0.881 11 O -0.341 6.341 12 C -0.100 4.100 13 N -0.308 5.308 14 C -0.012 4.012 15 C -0.156 4.156 16 C 0.017 3.983 17 N -0.314 5.314 18 C -0.378 4.378 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.550 5.550 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.047 3.953 27 C -0.181 4.181 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.217 0.783 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.156 0.844 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.107 0.893 50 H 0.063 0.937 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.238 1.889 -19.348 28.062 hybrid contribution 0.614 1.086 0.327 1.289 sum -19.624 2.975 -19.021 27.491 Atomic orbital electron populations 1.22750 0.81255 1.02892 0.99731 1.87982 1.19320 1.26938 1.95291 1.22637 0.92465 0.85603 1.00529 1.22166 0.92908 0.96245 0.85873 0.91123 1.22171 1.01401 1.02146 0.97034 1.88105 1.32709 1.67891 1.39227 1.23331 0.85743 0.98540 0.97304 1.21841 0.96509 0.81910 0.94168 0.88133 1.86648 1.60735 1.21175 1.65533 1.22570 0.96776 0.95940 0.94665 1.60474 1.05316 1.59601 1.05384 1.21492 0.88509 0.95855 0.95378 1.21997 0.95401 1.00697 0.97467 1.20927 0.94332 0.97011 0.85980 1.44049 1.22724 1.65185 0.99476 1.19244 1.11266 1.10119 0.97215 0.91641 1.25047 0.99314 0.95845 0.99593 1.70042 1.49610 1.18072 1.17244 0.86228 0.79473 0.80368 0.80753 1.20220 1.21797 1.21568 1.20733 0.82778 0.93779 0.97983 1.22402 1.00340 1.01994 0.93322 0.89535 0.94078 0.94325 0.92650 0.92160 0.92558 0.90622 0.92014 0.92707 0.92919 0.78310 0.90691 0.94768 0.84416 0.94865 0.91646 0.93799 0.96913 0.92731 0.93747 0.96673 0.89321 0.93664 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.75 9.79 -40.08 -0.39 -4.14 16 3 C 0.06 0.50 5.81 37.16 0.22 0.72 16 4 C 0.09 0.71 3.13 -26.73 -0.08 0.63 16 5 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 6 C -0.17 -1.33 9.33 37.16 0.35 -0.98 16 7 O -0.36 -4.00 9.92 -49.79 -0.49 -4.50 16 8 C 0.03 0.26 5.38 37.16 0.20 0.46 16 9 C 0.12 1.27 3.46 -26.73 -0.09 1.18 16 10 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 11 O -0.54 -6.93 13.17 -40.08 -0.53 -7.46 16 12 C 0.03 0.36 5.15 -3.83 -0.02 0.34 16 13 N -0.68 -9.79 6.18 -106.68 -0.66 -10.45 16 14 C 0.10 1.65 2.46 -67.67 -0.17 1.48 16 15 C -0.12 -2.10 5.59 -26.61 -0.15 -2.24 16 16 C 0.14 3.09 6.52 -3.71 -0.02 3.07 16 17 N -0.59 -15.06 2.99 -172.32 -0.52 -15.57 16 18 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 19 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 20 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 21 N -0.90 -26.50 11.19 55.49 0.62 -25.88 16 22 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.17 4.19 5.30 -3.71 -0.02 4.17 16 27 C -0.14 -2.73 5.36 -26.61 -0.14 -2.87 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 34 H 0.07 0.73 7.56 -51.93 -0.39 0.34 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.05 0.43 7.87 -51.93 -0.41 0.02 16 38 H 0.37 3.69 9.04 45.56 0.41 4.11 16 39 H 0.07 0.85 7.41 -51.93 -0.38 0.47 16 40 H 0.03 0.38 8.06 -51.92 -0.42 -0.04 16 41 H 0.34 4.71 8.33 -39.29 -0.33 4.39 16 42 H 0.03 0.59 7.80 -51.93 -0.40 0.18 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.04 0.69 7.42 -51.92 -0.39 0.31 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.05 1.14 7.93 -51.92 -0.41 0.73 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 50 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 51 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 402.22 15.07 6.06 6.06 Total: -1.00 -32.58 402.22 -8.88 -41.46 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.89 Total: 3.46 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 0.95 Total: 0.10 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.55 Total: -51.90 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.41 Total: -16.10 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.58 -8.88 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345606003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.340 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds