Wall clock time and date at job start Fri Apr 10 2020 14:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00379 * 2 1 4 4 C 1.52998 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47518 * 175.00177 * 4 3 2 6 6 C 1.52998 * 109.46967 * 54.99893 * 4 3 2 7 7 O 1.42900 * 109.47208 * 294.99934 * 4 3 2 8 8 C 1.42900 * 114.00167 * 209.99588 * 7 4 3 9 9 C 1.52998 * 109.47082 * 179.97438 * 8 7 4 10 10 H 1.08999 * 109.47606 * 305.00378 * 9 8 7 11 11 O 1.42903 * 109.47051 * 65.00662 * 9 8 7 12 12 C 1.53005 * 109.47298 * 185.00061 * 9 8 7 13 13 N 1.46890 * 109.47481 * 180.02562 * 12 9 8 14 14 C 1.46895 * 111.00179 * 180.02562 * 13 12 9 15 15 C 1.53041 * 109.45970 * 275.06496 * 14 13 12 16 16 C 1.53193 * 109.31273 * 178.61271 * 15 14 13 17 17 N 1.46920 * 108.77507 * 54.64145 * 16 15 14 18 18 C 1.36938 * 120.63317 * 126.41247 * 17 16 15 19 19 H 1.08000 * 120.00027 * 331.82963 * 18 17 16 20 20 C 1.38808 * 119.99940 * 151.82264 * 18 17 16 21 21 N 1.31622 * 120.00275 * 343.07050 * 20 18 17 22 22 Si 1.86809 * 119.99790 * 163.06935 * 20 18 17 23 23 H 1.48500 * 109.46808 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46997 * 120.00489 * 22 20 18 25 25 H 1.48500 * 109.47072 * 240.00261 * 22 20 18 26 26 C 1.46925 * 118.73796 * 306.38370 * 17 16 15 27 27 C 1.53041 * 109.46449 * 155.00123 * 14 13 12 28 28 H 1.09000 * 109.47759 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47336 * 300.00077 * 1 2 3 30 30 H 1.09001 * 109.46728 * 59.99686 * 1 2 3 31 31 H 1.09002 * 109.47392 * 59.99998 * 3 2 1 32 32 H 1.09000 * 109.47371 * 299.99954 * 3 2 1 33 33 H 1.09004 * 109.47147 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47478 * 299.99721 * 6 4 3 35 35 H 1.08999 * 109.46818 * 60.00557 * 6 4 3 36 36 H 1.09005 * 109.46574 * 60.00408 * 8 7 4 37 37 H 1.08991 * 109.47420 * 300.00238 * 8 7 4 38 38 H 0.96693 * 114.00084 * 59.99342 * 11 9 8 39 39 H 1.08999 * 109.47051 * 300.00657 * 12 9 8 40 40 H 1.09010 * 109.46938 * 60.00193 * 12 9 8 41 41 H 1.00906 * 110.99965 * 303.95534 * 13 12 9 42 42 H 1.08999 * 109.46391 * 35.02974 * 14 13 12 43 43 H 1.08992 * 109.49940 * 298.56550 * 15 14 13 44 44 H 1.09010 * 109.49340 * 58.66671 * 15 14 13 45 45 H 1.08999 * 109.58620 * 294.84655 * 16 15 14 46 46 H 1.09007 * 109.70099 * 174.50045 * 16 15 14 47 47 H 0.97002 * 120.00170 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.59351 * 293.83025 * 26 17 16 49 49 H 1.08995 * 109.70449 * 173.46419 * 26 17 16 50 50 H 1.09004 * 109.49635 * 301.33511 * 27 14 13 51 51 H 1.09001 * 109.50009 * 61.39447 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.9786 2.1763 -0.0889 6 6 3.9789 0.3192 -1.1806 7 8 3.9648 0.5795 1.2220 8 6 5.2614 0.9976 1.6533 9 6 5.6156 0.2909 2.9633 10 1 4.8325 0.4750 3.6988 11 8 5.7297 -1.1144 2.7306 12 6 6.9470 0.8302 3.4900 13 7 7.2874 0.1513 4.7474 14 6 8.5625 0.6453 5.2840 15 6 9.7190 -0.1174 4.6336 16 6 11.0480 0.4240 5.1698 17 7 11.0292 0.3548 6.6373 18 6 12.0342 -0.2781 7.3189 19 1 12.5763 -1.0876 6.8528 20 6 12.3564 0.1210 8.6087 21 7 11.9505 1.2902 9.0567 22 14 13.3659 -1.0016 9.7090 23 1 13.6955 -2.2491 8.9740 24 1 14.6213 -0.3120 10.1009 25 1 12.5838 -1.3356 10.9263 26 6 9.9119 0.9781 7.3597 27 6 8.5956 0.4305 6.7989 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 5.0656 0.2334 -1.1805 34 1 3.5359 -0.6727 -1.0911 35 1 3.6515 0.7808 -2.1122 36 1 5.2614 2.0762 1.8113 37 1 5.9978 0.7420 0.8915 38 1 6.4092 -1.3523 2.0852 39 1 7.7301 0.6461 2.7545 40 1 6.8601 1.9023 3.6675 41 1 6.5467 0.2527 5.4251 42 1 8.6607 1.7087 5.0659 43 1 9.6354 -1.1776 4.8721 44 1 9.6811 0.0171 3.5525 45 1 11.1745 1.4597 4.8544 46 1 11.8717 -0.1780 4.7860 47 1 12.1753 1.5689 9.9582 48 1 9.9457 2.0589 7.2228 49 1 9.9831 0.7417 8.4213 50 1 7.7580 0.9548 7.2591 51 1 8.5219 -0.6349 7.0170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345606003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:10 Heat of formation + Delta-G solvation = -149.678329 kcal Electronic energy + Delta-G solvation = -27024.475546 eV Core-core repulsion = 23151.475029 eV Total energy + Delta-G solvation = -3873.000517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.11523 -39.59516 -38.67150 -37.59851 -36.17809 -33.97958 -33.07701 -32.02049 -31.34355 -29.93036 -28.27165 -26.97710 -26.53852 -25.28287 -23.86962 -22.87601 -22.56536 -22.01811 -20.68322 -18.73975 -18.29286 -17.67281 -17.22243 -17.07386 -16.88867 -16.61995 -16.12727 -15.96902 -15.79499 -15.46517 -15.31694 -15.28440 -14.86803 -14.68837 -14.37095 -13.95378 -13.75008 -13.60195 -13.37046 -13.20707 -13.06348 -12.93929 -12.86014 -12.71041 -12.58575 -12.37523 -12.09285 -12.06068 -11.97319 -11.92900 -11.77521 -11.58051 -11.33540 -11.15299 -10.78176 -10.58624 -10.54368 -10.51017 -9.28977 -8.68698 -7.88105 -5.33151 1.45608 1.47742 1.58450 2.47318 2.51206 2.90087 3.21301 3.32062 3.64554 3.69808 3.84185 3.93476 4.03629 4.07288 4.11760 4.15305 4.21589 4.31070 4.41597 4.44375 4.48228 4.50141 4.52458 4.55754 4.57182 4.69860 4.71312 4.72565 4.83872 4.87477 4.88572 4.96523 4.98488 5.03621 5.10924 5.13632 5.26298 5.37640 5.42157 5.53733 5.65063 5.73690 6.12943 6.20299 6.38289 6.39429 6.48968 6.96360 7.14840 7.86244 8.37809 9.18575 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.039459 B = 0.001904 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.422543 B =14700.730654 C =14842.490204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.060 3.940 4 C 0.079 3.921 5 H 0.094 0.906 6 C -0.166 4.166 7 O -0.390 6.390 8 C 0.032 3.968 9 C 0.121 3.879 10 H 0.090 0.910 11 O -0.561 6.561 12 C 0.035 3.965 13 N -0.680 5.680 14 C 0.108 3.892 15 C -0.103 4.103 16 C 0.140 3.860 17 N -0.611 5.611 18 C -0.261 4.261 19 H 0.065 0.935 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.180 3.820 27 C -0.128 4.128 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.381 0.619 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.342 0.658 42 H 0.035 0.965 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.014 0.986 46 H 0.054 0.946 47 H 0.250 0.750 48 H -0.003 1.003 49 H 0.053 0.947 50 H 0.066 0.934 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.921 2.954 -21.559 30.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.017 4.017 4 C 0.021 3.979 5 H 0.112 0.888 6 C -0.223 4.223 7 O -0.309 6.309 8 C -0.045 4.045 9 C 0.061 3.939 10 H 0.108 0.892 11 O -0.367 6.367 12 C -0.094 4.094 13 N -0.311 5.311 14 C -0.001 4.001 15 C -0.142 4.142 16 C 0.014 3.986 17 N -0.334 5.334 18 C -0.392 4.392 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.053 3.947 27 C -0.167 4.167 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.229 0.771 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.160 0.840 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.032 0.968 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.015 0.985 49 H 0.072 0.928 50 H 0.085 0.915 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.082 2.152 -21.208 29.981 hybrid contribution 0.836 1.024 0.827 1.560 sum -20.246 3.176 -20.381 28.903 Atomic orbital electron populations 1.22886 0.79960 1.03490 1.00717 1.87937 1.20955 1.28408 1.95522 1.22796 0.92235 0.85038 1.01609 1.22406 0.93374 0.97207 0.84870 0.88791 1.22126 1.01394 1.00957 0.97833 1.88067 1.33477 1.68845 1.40536 1.23286 0.85555 0.99165 0.96504 1.21776 0.95780 0.81288 0.95050 0.89227 1.86611 1.61475 1.22447 1.66164 1.22594 0.97292 0.96366 0.93187 1.60381 1.04298 1.60037 1.06431 1.21229 0.89711 0.95765 0.93414 1.21812 0.93755 0.99495 0.99154 1.21083 0.96442 0.97231 0.83804 1.44323 1.22715 1.65200 1.01210 1.19549 1.11587 1.10193 0.97828 0.91739 1.25797 1.00917 0.97118 1.00863 1.70185 1.51096 1.19616 1.17308 0.85219 0.77775 0.78822 0.78715 1.19179 1.21778 1.21659 1.20537 0.84944 0.92807 0.96389 1.22167 0.98227 1.00943 0.95385 0.89258 0.93762 0.92609 0.92782 0.89756 0.92253 0.93047 0.90280 0.90951 0.91649 0.77055 0.89925 0.93492 0.83972 0.94739 0.93107 0.90752 0.96827 0.92790 0.94102 0.98507 0.92823 0.91526 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.81 9.79 -144.34 -1.41 -9.22 16 3 C 0.06 0.83 5.81 71.98 0.42 1.25 16 4 C 0.08 1.14 3.13 30.59 0.10 1.24 16 5 H 0.09 0.89 7.79 -2.39 -0.02 0.87 16 6 C -0.17 -2.31 9.33 71.98 0.67 -1.64 16 7 O -0.39 -8.03 9.92 -135.06 -1.34 -9.37 16 8 C 0.03 0.51 5.38 71.98 0.39 0.90 16 9 C 0.12 2.40 3.46 30.60 0.11 2.51 16 10 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 11 O -0.56 -13.64 13.17 -144.35 -1.90 -15.54 16 12 C 0.04 0.71 5.15 86.31 0.44 1.16 16 13 N -0.68 -18.12 6.18 -491.44 -3.04 -21.16 16 14 C 0.11 3.50 2.46 44.94 0.11 3.61 16 15 C -0.10 -3.52 5.59 30.67 0.17 -3.35 16 16 C 0.14 5.90 6.52 86.36 0.56 6.47 16 17 N -0.61 -31.41 2.99 -699.11 -2.09 -33.51 16 18 C -0.26 -14.73 9.58 84.03 0.81 -13.93 16 19 H 0.06 3.57 7.88 -2.91 -0.02 3.54 16 20 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 21 N -0.94 -56.12 11.19 21.65 0.24 -55.87 16 22 Si 0.97 45.70 29.59 68.60 2.03 47.73 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 C 0.18 8.82 5.30 86.36 0.46 9.28 16 27 C -0.13 -4.88 5.36 30.67 0.16 -4.71 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 29 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.76 7.87 -2.38 -0.02 0.75 16 34 H 0.05 0.97 7.56 -2.39 -0.02 0.95 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.89 8.09 -2.38 -0.02 0.87 16 37 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 38 H 0.38 6.95 9.04 -74.06 -0.67 6.28 16 39 H 0.08 1.57 7.41 -2.39 -0.02 1.56 16 40 H 0.05 0.87 8.06 -2.38 -0.02 0.85 16 41 H 0.34 8.83 8.33 -89.69 -0.75 8.08 16 42 H 0.03 1.13 7.80 -2.39 -0.02 1.11 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.07 2.12 7.42 -2.38 -0.02 2.10 16 45 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.05 2.23 7.93 -2.38 -0.02 2.21 16 47 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 48 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 49 H 0.05 2.99 6.07 -2.39 -0.01 2.98 16 50 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 51 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -71.16 402.22 -1.97 -73.13 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.52 Total: 22.00 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.06 Total: 1.80 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.88 Total: -110.54 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -4.65 Total: -34.12 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.16 -1.97 -73.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345606003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.544 kcal (2) G-P(sol) polarization free energy of solvation -71.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds