Wall clock time and date at job start Fri Apr 10 2020 14:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99889 * 2 1 4 4 C 1.53006 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47057 * 185.00150 * 4 3 2 6 6 C 1.52998 * 109.46880 * 304.99956 * 4 3 2 7 7 O 1.42900 * 109.47103 * 65.00295 * 4 3 2 8 8 C 1.42894 * 113.99988 * 150.00215 * 7 4 3 9 9 C 1.53002 * 109.47202 * 179.97438 * 8 7 4 10 10 H 1.09000 * 109.46759 * 54.99950 * 9 8 7 11 11 O 1.42902 * 109.47219 * 295.00165 * 9 8 7 12 12 C 1.52999 * 109.47613 * 174.99690 * 9 8 7 13 13 N 1.46900 * 109.47489 * 184.99952 * 12 9 8 14 14 C 1.46901 * 111.00080 * 179.97438 * 13 12 9 15 15 C 1.53036 * 109.46104 * 275.07204 * 14 13 12 16 16 C 1.53191 * 109.31425 * 178.61237 * 15 14 13 17 17 N 1.46933 * 108.77270 * 54.63349 * 16 15 14 18 18 C 1.36930 * 120.63020 * 126.41783 * 17 16 15 19 19 H 1.08004 * 120.00077 * 331.81729 * 18 17 16 20 20 C 1.38812 * 120.00383 * 151.82663 * 18 17 16 21 21 N 1.31617 * 119.99671 * 343.07129 * 20 18 17 22 22 Si 1.86797 * 120.00376 * 163.07932 * 20 18 17 23 23 H 1.48495 * 109.47520 * 59.99686 * 22 20 18 24 24 H 1.48501 * 109.47199 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46938 * 299.99481 * 22 20 18 26 26 C 1.46928 * 118.73727 * 306.39081 * 17 16 15 27 27 C 1.53038 * 109.45932 * 155.00230 * 14 13 12 28 28 H 1.09003 * 109.46730 * 60.00024 * 1 2 3 29 29 H 1.08996 * 109.47027 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46809 * 300.00314 * 1 2 3 31 31 H 1.08995 * 109.47506 * 59.99911 * 3 2 1 32 32 H 1.08998 * 109.47358 * 299.99533 * 3 2 1 33 33 H 1.09009 * 109.46576 * 180.02562 * 6 4 3 34 34 H 1.09002 * 109.47097 * 299.99411 * 6 4 3 35 35 H 1.08997 * 109.47560 * 60.00467 * 6 4 3 36 36 H 1.09000 * 109.47576 * 59.99924 * 8 7 4 37 37 H 1.09003 * 109.47247 * 299.99288 * 8 7 4 38 38 H 0.96702 * 113.99449 * 299.99236 * 11 9 8 39 39 H 1.09006 * 109.46590 * 64.99780 * 12 9 8 40 40 H 1.09003 * 109.46732 * 305.00342 * 12 9 8 41 41 H 1.00899 * 110.99387 * 56.04906 * 13 12 9 42 42 H 1.09008 * 109.45777 * 35.02882 * 14 13 12 43 43 H 1.08996 * 109.49817 * 298.56362 * 15 14 13 44 44 H 1.08997 * 109.50002 * 58.66084 * 15 14 13 45 45 H 1.09005 * 109.58886 * 294.85213 * 16 15 14 46 46 H 1.08997 * 109.70807 * 174.49063 * 16 15 14 47 47 H 0.97007 * 120.00507 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.59141 * 293.82251 * 26 17 16 49 49 H 1.09001 * 109.69913 * 173.46834 * 26 17 16 50 50 H 1.09004 * 109.49542 * 301.33640 * 27 14 13 51 51 H 1.08998 * 109.49651 * 61.43357 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 0.0889 6 6 3.9790 0.3194 1.1807 7 8 3.9649 0.5797 -1.2220 8 6 5.2614 0.9979 -1.6533 9 6 5.6161 0.2903 -2.9627 10 1 4.8331 0.4737 -3.6985 11 8 5.7305 -1.1148 -2.7290 12 6 6.9474 0.8297 -3.4896 13 7 7.2293 0.2386 -4.8045 14 6 8.5028 0.7352 -5.3429 15 6 8.2681 2.0654 -6.0622 16 6 9.6034 2.5973 -6.5921 17 7 10.2271 1.5615 -7.4271 18 6 10.6245 1.8428 -8.7069 19 1 10.1180 2.6104 -9.2732 20 6 11.6781 1.1413 -9.2766 21 7 12.5035 0.4581 -8.5121 22 14 11.9248 1.1670 -11.1280 23 1 12.1392 2.5653 -11.5795 24 1 13.1103 0.3451 -11.4809 25 1 10.7208 0.6103 -11.7956 26 6 10.4168 0.2184 -6.8624 27 6 9.0723 -0.2867 -6.3295 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 5.0657 0.2337 1.1804 34 1 3.6515 0.7809 2.1122 35 1 3.5360 -0.6725 1.0911 36 1 5.9978 0.7422 -0.8915 37 1 5.2614 2.0764 -1.8113 38 1 6.4101 -1.3521 -2.0833 39 1 7.7458 0.5682 -2.7949 40 1 6.8884 1.9140 -3.5837 41 1 6.4725 0.4124 -5.4487 42 1 9.2090 0.8840 -4.5259 43 1 7.5812 1.9126 -6.8946 44 1 7.8407 2.7857 -5.3647 45 1 10.2597 2.8361 -5.7552 46 1 9.4314 3.4931 -7.1888 47 1 13.2401 -0.0319 -8.9101 48 1 11.1393 0.2632 -6.0475 49 1 10.7804 -0.4576 -7.6363 50 1 9.2173 -1.2405 -5.8222 51 1 8.3778 -0.4174 -7.1594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345606005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:19 Heat of formation + Delta-G solvation = -125.396563 kcal Electronic energy + Delta-G solvation = -27008.145849 eV Core-core repulsion = 23136.198268 eV Total energy + Delta-G solvation = -3871.947581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.34791 -38.44534 -37.70915 -36.69452 -34.71940 -32.51508 -32.12529 -30.49585 -29.76327 -28.59336 -27.73458 -26.08216 -25.30514 -23.84178 -22.13575 -21.85965 -21.40934 -21.27808 -19.20371 -17.63955 -16.96976 -16.68684 -16.55031 -16.28691 -15.82606 -15.42266 -15.05494 -14.82958 -14.59052 -14.40357 -13.87532 -13.65362 -13.59442 -13.40974 -13.00721 -12.92238 -12.81845 -12.62117 -12.40368 -12.17456 -12.10254 -11.93440 -11.52113 -11.37637 -11.26824 -11.04664 -10.85802 -10.75123 -10.68857 -10.28171 -10.20812 -10.10877 -10.02424 -9.89603 -9.83943 -9.68704 -9.40836 -8.45603 -8.02307 -6.64456 -5.76093 -3.18642 3.17728 3.40269 3.41367 3.46098 3.47524 4.25072 4.40526 4.49400 4.52012 4.64675 4.76700 4.79377 4.89657 4.95530 4.98260 5.00759 5.05559 5.14287 5.23163 5.26866 5.32816 5.33626 5.41486 5.44584 5.52622 5.55501 5.59389 5.71011 5.88502 5.95749 5.98206 6.10300 6.32071 6.50001 6.62574 6.65200 6.71884 6.74433 6.88156 6.95740 6.97290 7.34758 7.41534 7.61634 7.71358 7.75084 7.82159 8.48377 9.24385 9.87758 10.44776 11.32425 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.001905 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.269325 B =14691.284431 C =14752.768090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.065 3.935 4 C 0.086 3.914 5 H 0.071 0.929 6 C -0.170 4.170 7 O -0.360 6.360 8 C 0.028 3.972 9 C 0.116 3.884 10 H 0.102 0.898 11 O -0.538 6.538 12 C 0.031 3.969 13 N -0.677 5.677 14 C 0.096 3.904 15 C -0.160 4.160 16 C 0.150 3.850 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.063 0.937 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.171 3.829 27 C -0.125 4.125 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.370 0.630 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.338 0.662 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.015 0.985 46 H 0.052 0.948 47 H 0.254 0.746 48 H 0.016 0.984 49 H 0.088 0.912 50 H 0.055 0.945 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.742 2.385 20.116 28.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C -0.012 4.012 4 C 0.028 3.972 5 H 0.089 0.911 6 C -0.227 4.227 7 O -0.279 6.279 8 C -0.049 4.049 9 C 0.056 3.944 10 H 0.119 0.881 11 O -0.342 6.342 12 C -0.100 4.100 13 N -0.306 5.306 14 C -0.013 4.013 15 C -0.201 4.201 16 C 0.023 3.977 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.081 0.919 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.044 3.956 27 C -0.164 4.164 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.216 0.784 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.034 0.966 49 H 0.106 0.894 50 H 0.074 0.926 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.784 1.389 19.780 28.011 hybrid contribution 0.338 1.591 -0.555 1.718 sum -19.446 2.980 19.225 27.507 Atomic orbital electron populations 1.22751 0.81250 1.02889 0.99740 1.87983 1.19327 1.26938 1.95295 1.22639 0.92457 0.85603 1.00541 1.22169 0.92920 0.96246 0.85863 0.91117 1.22172 1.01379 1.02147 0.97044 1.88107 1.32708 1.67884 1.39228 1.23335 0.85741 0.98558 0.97295 1.21847 0.96642 0.81778 0.94162 0.88052 1.86660 1.60773 1.21341 1.65435 1.22557 0.96924 0.96885 0.93592 1.60638 1.05428 1.61318 1.03240 1.21549 0.89752 0.93521 0.96474 1.22704 1.00631 0.97369 0.99434 1.20803 0.90961 0.92188 0.93797 1.44060 1.70169 1.05454 1.11801 1.19129 1.10464 1.20100 0.88615 0.91879 1.25044 0.95269 1.01203 0.98116 1.70021 1.15646 1.35496 1.33533 0.86367 0.77169 0.77568 0.85634 1.20950 1.21621 1.21024 1.20806 0.90552 0.87077 0.97124 1.22173 0.99997 0.97032 0.97243 0.94067 0.89539 0.94323 0.92158 0.92634 0.92576 0.92010 0.90628 0.92955 0.92665 0.78376 0.90787 0.94596 0.84394 0.91479 0.92185 0.93796 0.96724 0.92991 0.93584 0.96586 0.89368 0.92648 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.75 9.79 -40.08 -0.39 -4.14 16 3 C 0.06 0.50 5.81 37.16 0.22 0.72 16 4 C 0.09 0.71 3.13 -26.73 -0.08 0.63 16 5 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 6 C -0.17 -1.32 9.33 37.16 0.35 -0.97 16 7 O -0.36 -4.00 9.92 -49.79 -0.49 -4.49 16 8 C 0.03 0.26 5.38 37.16 0.20 0.46 16 9 C 0.12 1.27 3.43 -26.73 -0.09 1.18 16 10 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 11 O -0.54 -6.88 13.25 -40.08 -0.53 -7.41 16 12 C 0.03 0.35 5.12 -3.82 -0.02 0.33 16 13 N -0.68 -9.74 6.20 -106.68 -0.66 -10.40 16 14 C 0.10 1.63 2.43 -67.67 -0.16 1.46 16 15 C -0.16 -2.77 5.33 -26.61 -0.14 -2.91 16 16 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 17 N -0.59 -14.99 2.99 -172.31 -0.52 -15.50 16 18 C -0.25 -7.04 9.58 -15.06 -0.14 -7.18 16 19 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 22 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 27 C -0.12 -2.47 5.69 -26.61 -0.15 -2.62 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.41 7.87 -51.92 -0.41 0.00 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.73 7.56 -51.93 -0.39 0.33 16 36 H 0.05 0.42 7.87 -51.93 -0.41 0.01 16 37 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 38 H 0.37 3.55 9.05 45.56 0.41 3.96 16 39 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 40 H 0.04 0.39 7.41 -51.93 -0.38 0.01 16 41 H 0.34 4.79 8.48 -39.29 -0.33 4.46 16 42 H 0.07 1.17 7.80 -51.92 -0.40 0.77 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.65 7.42 -51.93 -0.39 0.27 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.40 6.07 -51.93 -0.31 2.08 16 50 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -32.46 402.50 -8.89 -41.34 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.90 Total: 3.85 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 0.95 Total: -0.37 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.56 Total: -51.72 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.42 Total: -16.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.46 -8.89 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345606005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.052 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds