Wall clock time and date at job start Fri Apr 10 2020 14:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99889 * 2 1 4 4 C 1.53006 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47057 * 185.00150 * 4 3 2 6 6 C 1.52998 * 109.46880 * 304.99956 * 4 3 2 7 7 O 1.42900 * 109.47103 * 65.00295 * 4 3 2 8 8 C 1.42894 * 113.99988 * 150.00215 * 7 4 3 9 9 C 1.53002 * 109.47202 * 179.97438 * 8 7 4 10 10 H 1.09000 * 109.46759 * 54.99950 * 9 8 7 11 11 O 1.42902 * 109.47219 * 295.00165 * 9 8 7 12 12 C 1.52999 * 109.47613 * 174.99690 * 9 8 7 13 13 N 1.46900 * 109.47489 * 184.99952 * 12 9 8 14 14 C 1.46901 * 111.00080 * 179.97438 * 13 12 9 15 15 C 1.53036 * 109.46104 * 275.07204 * 14 13 12 16 16 C 1.53191 * 109.31425 * 178.61237 * 15 14 13 17 17 N 1.46933 * 108.77270 * 54.63349 * 16 15 14 18 18 C 1.36930 * 120.63020 * 126.41783 * 17 16 15 19 19 H 1.08004 * 120.00077 * 331.81729 * 18 17 16 20 20 C 1.38812 * 120.00383 * 151.82663 * 18 17 16 21 21 N 1.31617 * 119.99671 * 343.07129 * 20 18 17 22 22 Si 1.86797 * 120.00376 * 163.07932 * 20 18 17 23 23 H 1.48495 * 109.47520 * 59.99686 * 22 20 18 24 24 H 1.48501 * 109.47199 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46938 * 299.99481 * 22 20 18 26 26 C 1.46928 * 118.73727 * 306.39081 * 17 16 15 27 27 C 1.53038 * 109.45932 * 155.00230 * 14 13 12 28 28 H 1.09003 * 109.46730 * 60.00024 * 1 2 3 29 29 H 1.08996 * 109.47027 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46809 * 300.00314 * 1 2 3 31 31 H 1.08995 * 109.47506 * 59.99911 * 3 2 1 32 32 H 1.08998 * 109.47358 * 299.99533 * 3 2 1 33 33 H 1.09009 * 109.46576 * 180.02562 * 6 4 3 34 34 H 1.09002 * 109.47097 * 299.99411 * 6 4 3 35 35 H 1.08997 * 109.47560 * 60.00467 * 6 4 3 36 36 H 1.09000 * 109.47576 * 59.99924 * 8 7 4 37 37 H 1.09003 * 109.47247 * 299.99288 * 8 7 4 38 38 H 0.96702 * 113.99449 * 299.99236 * 11 9 8 39 39 H 1.09006 * 109.46590 * 64.99780 * 12 9 8 40 40 H 1.09003 * 109.46732 * 305.00342 * 12 9 8 41 41 H 1.00899 * 110.99387 * 56.04906 * 13 12 9 42 42 H 1.09008 * 109.45777 * 35.02882 * 14 13 12 43 43 H 1.08996 * 109.49817 * 298.56362 * 15 14 13 44 44 H 1.08997 * 109.50002 * 58.66084 * 15 14 13 45 45 H 1.09005 * 109.58886 * 294.85213 * 16 15 14 46 46 H 1.08997 * 109.70807 * 174.49063 * 16 15 14 47 47 H 0.97007 * 120.00507 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.59141 * 293.82251 * 26 17 16 49 49 H 1.09001 * 109.69913 * 173.46834 * 26 17 16 50 50 H 1.09004 * 109.49542 * 301.33640 * 27 14 13 51 51 H 1.08998 * 109.49651 * 61.43357 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 0.0889 6 6 3.9790 0.3194 1.1807 7 8 3.9649 0.5797 -1.2220 8 6 5.2614 0.9979 -1.6533 9 6 5.6161 0.2903 -2.9627 10 1 4.8331 0.4737 -3.6985 11 8 5.7305 -1.1148 -2.7290 12 6 6.9474 0.8297 -3.4896 13 7 7.2293 0.2386 -4.8045 14 6 8.5028 0.7352 -5.3429 15 6 8.2681 2.0654 -6.0622 16 6 9.6034 2.5973 -6.5921 17 7 10.2271 1.5615 -7.4271 18 6 10.6245 1.8428 -8.7069 19 1 10.1180 2.6104 -9.2732 20 6 11.6781 1.1413 -9.2766 21 7 12.5035 0.4581 -8.5121 22 14 11.9248 1.1670 -11.1280 23 1 12.1392 2.5653 -11.5795 24 1 13.1103 0.3451 -11.4809 25 1 10.7208 0.6103 -11.7956 26 6 10.4168 0.2184 -6.8624 27 6 9.0723 -0.2867 -6.3295 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 5.0657 0.2337 1.1804 34 1 3.6515 0.7809 2.1122 35 1 3.5360 -0.6725 1.0911 36 1 5.9978 0.7422 -0.8915 37 1 5.2614 2.0764 -1.8113 38 1 6.4101 -1.3521 -2.0833 39 1 7.7458 0.5682 -2.7949 40 1 6.8884 1.9140 -3.5837 41 1 6.4725 0.4124 -5.4487 42 1 9.2090 0.8840 -4.5259 43 1 7.5812 1.9126 -6.8946 44 1 7.8407 2.7857 -5.3647 45 1 10.2597 2.8361 -5.7552 46 1 9.4314 3.4931 -7.1888 47 1 13.2401 -0.0319 -8.9101 48 1 11.1393 0.2632 -6.0475 49 1 10.7804 -0.4576 -7.6363 50 1 9.2173 -1.2405 -5.8222 51 1 8.3778 -0.4174 -7.1594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345606005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:18 Heat of formation + Delta-G solvation = -150.228202 kcal Electronic energy + Delta-G solvation = -27009.222630 eV Core-core repulsion = 23136.198268 eV Total energy + Delta-G solvation = -3873.024361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.12969 -39.62076 -38.67419 -37.59636 -36.21008 -33.95392 -33.07281 -32.00165 -31.34405 -29.87627 -28.27077 -26.97014 -26.53477 -25.19166 -23.76688 -22.90582 -22.70065 -22.07079 -20.83377 -18.79775 -18.28992 -17.64562 -17.19292 -17.04622 -16.90196 -16.52847 -16.13886 -15.95101 -15.73976 -15.49329 -15.32315 -15.21209 -14.81150 -14.54599 -14.44563 -14.10480 -13.77757 -13.62358 -13.31428 -13.16642 -13.06081 -12.91979 -12.82445 -12.71229 -12.56434 -12.48468 -12.08070 -12.02153 -11.95751 -11.94654 -11.81205 -11.59081 -11.42305 -11.25846 -10.79912 -10.58814 -10.53216 -10.50539 -9.21135 -8.68216 -7.87462 -5.32950 1.46091 1.49303 1.55740 2.47991 2.51270 2.90200 3.23858 3.33288 3.62498 3.70679 3.85467 3.92364 4.02052 4.08998 4.10992 4.15789 4.22068 4.31139 4.39357 4.42550 4.45888 4.49498 4.52545 4.55625 4.57536 4.67449 4.72373 4.75143 4.83853 4.87280 4.87525 4.97479 4.98874 5.06570 5.10579 5.18073 5.27528 5.34457 5.37557 5.52601 5.64723 5.74164 6.12642 6.20166 6.38121 6.39897 6.49367 6.95785 7.14988 7.86566 8.38225 9.18858 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.001905 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.269325 B =14691.284431 C =14752.768090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.060 3.940 4 C 0.079 3.921 5 H 0.095 0.905 6 C -0.166 4.166 7 O -0.390 6.390 8 C 0.032 3.968 9 C 0.120 3.880 10 H 0.089 0.911 11 O -0.563 6.563 12 C 0.036 3.964 13 N -0.681 5.681 14 C 0.109 3.891 15 C -0.145 4.145 16 C 0.144 3.856 17 N -0.611 5.611 18 C -0.265 4.265 19 H 0.065 0.935 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.274 1.274 24 H -0.293 1.293 25 H -0.280 1.280 26 C 0.178 3.822 27 C -0.112 4.112 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.381 0.619 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.341 0.659 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.014 0.986 46 H 0.052 0.948 47 H 0.250 0.750 48 H -0.004 1.004 49 H 0.051 0.949 50 H 0.061 0.939 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.261 3.783 21.320 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.017 4.017 4 C 0.021 3.979 5 H 0.112 0.888 6 C -0.223 4.223 7 O -0.310 6.310 8 C -0.045 4.045 9 C 0.061 3.939 10 H 0.107 0.893 11 O -0.369 6.369 12 C -0.094 4.094 13 N -0.311 5.311 14 C -0.001 4.001 15 C -0.186 4.186 16 C 0.018 3.982 17 N -0.334 5.334 18 C -0.395 4.395 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.206 1.206 26 C 0.052 3.948 27 C -0.151 4.151 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.230 0.770 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.159 0.841 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.032 0.968 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.014 0.986 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.336 2.809 21.012 30.077 hybrid contribution 0.771 1.175 -0.863 1.649 sum -20.566 3.984 20.149 29.065 Atomic orbital electron populations 1.22886 0.79963 1.03488 1.00717 1.87939 1.20954 1.28414 1.95525 1.22799 0.92250 0.85033 1.01611 1.22409 0.93366 0.97218 0.84863 0.88764 1.22127 1.01388 1.00955 0.97838 1.88068 1.33497 1.68852 1.40535 1.23293 0.85542 0.99195 0.96489 1.21784 0.95929 0.81189 0.95039 0.89258 1.86619 1.61557 1.22622 1.66116 1.22578 0.97404 0.97566 0.91852 1.60504 1.04335 1.61772 1.04456 1.21256 0.90998 0.92244 0.95558 1.22535 0.98090 0.98097 0.99869 1.20985 0.92548 0.91444 0.93245 1.44316 1.70522 1.06728 1.11868 1.19468 1.10202 1.19860 0.90010 0.91729 1.25815 0.95279 1.01361 1.02225 1.70177 1.16198 1.36554 1.35107 0.85344 0.76800 0.77732 0.80592 1.19986 1.21960 1.20566 1.20579 0.92447 0.86496 0.95286 1.21938 0.97305 0.98175 0.97726 0.93769 0.89261 0.92602 0.89753 0.92785 0.92250 0.90278 0.93058 0.91660 0.90854 0.77023 0.90100 0.93039 0.84075 0.91489 0.92699 0.90370 0.96767 0.92964 0.94089 0.98560 0.93010 0.92018 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.81 9.79 -144.35 -1.41 -9.22 16 3 C 0.06 0.82 5.81 71.98 0.42 1.24 16 4 C 0.08 1.14 3.13 30.60 0.10 1.23 16 5 H 0.09 0.88 7.79 -2.39 -0.02 0.86 16 6 C -0.17 -2.30 9.33 71.98 0.67 -1.62 16 7 O -0.39 -8.01 9.92 -135.06 -1.34 -9.35 16 8 C 0.03 0.50 5.38 71.98 0.39 0.89 16 9 C 0.12 2.38 3.43 30.59 0.10 2.49 16 10 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 11 O -0.56 -13.65 13.25 -144.34 -1.91 -15.56 16 12 C 0.04 0.71 5.12 86.30 0.44 1.15 16 13 N -0.68 -18.04 6.20 -491.42 -3.05 -21.09 16 14 C 0.11 3.49 2.43 44.94 0.11 3.60 16 15 C -0.15 -4.66 5.33 30.67 0.16 -4.50 16 16 C 0.14 5.92 6.52 86.36 0.56 6.48 16 17 N -0.61 -31.18 2.99 -699.08 -2.09 -33.27 16 18 C -0.27 -14.86 9.58 84.03 0.81 -14.05 16 19 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 20 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 21 N -0.93 -56.24 11.19 21.65 0.24 -55.99 16 22 Si 0.97 45.57 29.59 68.60 2.03 47.60 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 C 0.18 8.84 5.30 86.36 0.46 9.30 16 27 C -0.11 -4.41 5.69 30.67 0.17 -4.23 16 28 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.76 7.87 -2.38 -0.02 0.74 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 0.96 7.56 -2.39 -0.02 0.94 16 36 H 0.07 0.85 7.87 -2.39 -0.02 0.83 16 37 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 38 H 0.38 6.79 9.05 -74.06 -0.67 6.12 16 39 H 0.08 1.54 8.06 -2.38 -0.02 1.52 16 40 H 0.05 0.90 7.41 -2.39 -0.02 0.89 16 41 H 0.34 8.89 8.48 -89.69 -0.76 8.13 16 42 H 0.07 2.19 7.80 -2.38 -0.02 2.17 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 2.01 7.42 -2.39 -0.02 2.00 16 45 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 46 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 47 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 48 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 50 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 51 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -71.17 402.50 -2.01 -73.18 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.54 Total: 22.68 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.06 Total: 1.04 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -4.90 Total: -110.35 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -4.67 Total: -34.14 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.17 -2.01 -73.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345606005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.047 kcal (2) G-P(sol) polarization free energy of solvation -71.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds