Wall clock time and date at job start Fri Apr 10 2020 14:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99771 * 2 1 4 4 C 1.50698 * 109.47400 * 293.95785 * 3 2 1 5 5 H 1.08004 * 119.99954 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00279 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99921 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00112 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46820 * 60.00407 * 8 6 4 10 10 H 1.48508 * 109.47025 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47263 * 300.00234 * 8 6 4 12 12 C 1.46898 * 110.99866 * 123.95477 * 2 1 3 13 13 C 1.52996 * 109.46907 * 66.05015 * 12 2 1 14 14 H 1.08996 * 109.47010 * 304.99047 * 13 12 2 15 15 O 1.42891 * 109.47391 * 64.99906 * 13 12 2 16 16 C 1.53004 * 109.46700 * 184.99598 * 13 12 2 17 17 N 1.46901 * 109.46916 * 179.97438 * 16 13 12 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.52993 * 109.47039 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47360 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.52162 * 64.87210 * 20 19 18 22 22 C 1.53173 * 109.52587 * 185.00006 * 20 19 18 23 23 C 1.53178 * 109.03884 * 176.88538 * 22 20 19 24 24 C 1.53088 * 109.16209 * 303.01890 * 23 22 20 25 25 O 1.42906 * 109.41531 * 57.60582 * 24 23 22 26 26 C 1.42904 * 114.09926 * 298.84376 * 25 24 23 27 27 H 1.08997 * 109.47263 * 296.04217 * 1 2 3 28 28 H 1.09001 * 109.47102 * 56.04386 * 1 2 3 29 29 H 1.09004 * 109.46599 * 176.04262 * 1 2 3 30 30 H 1.09009 * 109.47139 * 53.95390 * 3 2 1 31 31 H 1.09000 * 109.47524 * 173.95502 * 3 2 1 32 32 H 0.97000 * 120.00143 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47188 * 306.04366 * 12 2 1 34 34 H 1.08999 * 109.46615 * 186.05142 * 12 2 1 35 35 H 0.96703 * 114.00376 * 59.99604 * 15 13 12 36 36 H 1.09004 * 109.46889 * 60.00145 * 16 13 12 37 37 H 1.08995 * 109.47384 * 299.99786 * 16 13 12 38 38 H 1.00901 * 111.00067 * 303.95263 * 17 16 13 39 39 H 1.09001 * 109.46798 * 300.00327 * 18 17 16 40 40 H 1.08998 * 109.46961 * 60.00043 * 18 17 16 41 41 H 1.09001 * 109.47393 * 299.99719 * 19 18 17 42 42 H 1.08998 * 109.47408 * 60.00073 * 19 18 17 43 43 H 0.96702 * 114.00242 * 300.00330 * 21 20 19 44 44 H 1.09002 * 109.54174 * 296.75126 * 22 20 19 45 45 H 1.08996 * 109.54859 * 56.92606 * 22 20 19 46 46 H 1.09002 * 109.52099 * 62.92307 * 23 22 20 47 47 H 1.09001 * 109.52174 * 183.04899 * 23 22 20 48 48 H 1.09004 * 109.48207 * 177.58851 * 24 23 22 49 49 H 1.09003 * 109.48194 * 297.61773 * 24 23 22 50 50 H 1.08999 * 109.47995 * 301.17342 * 26 25 24 51 51 H 1.09004 * 109.47915 * 181.14224 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0266 3.3496 -1.5284 7 7 2.7109 4.0023 -0.6145 8 14 1.5827 4.1869 -3.1381 9 1 0.1056 4.2231 -3.2863 10 1 2.1148 5.5734 -3.1380 11 1 2.1754 3.4299 -4.2699 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2956 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2130 17 7 1.7201 -4.4376 2.0526 18 6 2.1266 -5.2166 3.2298 19 6 1.7470 -6.6846 3.0258 20 6 2.1698 -7.4959 4.2522 21 8 1.4220 -7.0648 5.3910 22 6 1.9044 -8.9830 3.9986 23 6 2.4028 -9.7916 5.2003 24 6 3.8883 -9.4964 5.4233 25 8 4.0691 -8.0928 5.6221 26 6 3.6643 -7.2894 4.5118 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 1.5610 1.9274 0.8310 31 1 3.0797 1.3445 0.1082 32 1 2.9855 4.9184 -0.7764 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1756 35 1 3.2602 -2.7165 -0.1361 36 1 1.5634 -2.6180 3.0904 37 1 3.1483 -2.9236 2.3400 38 1 0.7341 -4.5481 1.8691 39 1 3.2053 -5.1358 3.3641 40 1 1.6204 -4.8295 4.1141 41 1 0.6684 -6.7657 2.8913 42 1 2.2536 -7.0714 2.1416 43 1 1.5440 -6.1311 5.6112 44 1 0.8344 -9.1454 3.8684 45 1 2.4332 -9.2998 3.0997 46 1 1.8380 -9.5093 6.0888 47 1 2.2671 -10.8554 5.0051 48 1 4.2381 -10.0362 6.3033 49 1 4.4575 -9.8163 4.5505 50 1 4.2306 -7.5803 3.6270 51 1 3.8528 -6.2392 4.7352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356630275.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:19 Heat of formation + Delta-G solvation = -149.211276 kcal Electronic energy + Delta-G solvation = -26913.017275 eV Core-core repulsion = 23040.037011 eV Total energy + Delta-G solvation = -3872.980264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47129 -38.35443 -37.21072 -35.97773 -35.02135 -33.50759 -32.53433 -32.20800 -29.99263 -28.22393 -27.02897 -25.81071 -25.69777 -24.11759 -23.05613 -21.74239 -21.15884 -20.48132 -20.16071 -17.53574 -16.87786 -16.72377 -16.45561 -16.16155 -15.76697 -15.50585 -15.16847 -14.97682 -14.78323 -14.53174 -14.28033 -14.20865 -13.72129 -13.48856 -13.31406 -13.21758 -13.04737 -12.76339 -12.25060 -12.18125 -12.02633 -11.88834 -11.59312 -11.48416 -11.32132 -11.28772 -11.10113 -10.89870 -10.78339 -10.76156 -10.67288 -10.54363 -10.28905 -9.98231 -9.62295 -9.56713 -9.11471 -8.61804 -8.43177 -7.20673 -6.02504 -4.03593 3.34482 3.38020 3.39897 3.41678 3.72012 3.79146 4.18062 4.28106 4.38650 4.44656 4.53991 4.63576 4.71747 4.77316 4.88560 4.89351 4.94005 5.06590 5.11938 5.14200 5.20899 5.28182 5.32921 5.35455 5.37051 5.48799 5.54718 5.59289 5.63827 5.64900 5.67919 5.74496 5.87980 6.03545 6.17067 6.28356 6.38810 6.71516 6.75006 6.76414 7.12599 7.26351 7.26497 7.31832 7.80134 8.03890 8.13467 8.20409 8.55172 9.04054 9.60546 11.08401 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.040895 B = 0.001776 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.515587 B =15764.744918 C =15925.458756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.025 3.975 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.536 6.536 16 C 0.025 3.975 17 N -0.676 5.676 18 C 0.052 3.948 19 C -0.143 4.143 20 C 0.104 3.896 21 O -0.549 6.549 22 C -0.108 4.108 23 C -0.153 4.153 24 C 0.058 3.942 25 O -0.375 6.375 26 C 0.034 3.966 27 H 0.008 0.992 28 H 0.075 0.925 29 H 0.046 0.954 30 H -0.011 1.011 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.368 0.632 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.342 0.658 39 H 0.074 0.926 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.375 0.625 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -26.613 12.789 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.110 0.890 15 O -0.339 6.339 16 C -0.105 4.105 17 N -0.307 5.307 18 C -0.077 4.077 19 C -0.181 4.181 20 C 0.062 3.938 21 O -0.356 6.356 22 C -0.146 4.146 23 C -0.191 4.191 24 C -0.019 4.019 25 O -0.293 6.293 26 C -0.043 4.043 27 H 0.026 0.974 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.007 0.993 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.214 0.786 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.160 0.840 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.223 0.777 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.111 0.889 49 H 0.067 0.933 50 H 0.079 0.921 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.173 -27.456 12.002 29.965 hybrid contribution -0.505 1.967 0.602 2.118 sum -0.332 -25.488 12.604 28.437 Atomic orbital electron populations 1.22259 0.89076 0.99498 1.00419 1.62025 1.06756 1.17450 1.39119 1.19742 0.95284 0.81580 0.96616 1.21133 1.34818 0.96847 1.01690 0.91834 1.24998 0.95319 0.97346 0.97039 1.69949 1.38461 1.11484 1.34122 0.86537 0.78682 0.78260 0.83789 1.20299 1.21390 1.20110 1.22728 1.00576 0.93884 0.93332 1.21871 0.97546 0.90680 0.84289 0.89000 1.86588 1.22907 1.83883 1.40556 1.22751 1.01584 0.87979 0.98151 1.60361 1.23750 1.08843 1.37751 1.22065 1.00875 0.93066 0.91720 1.22222 1.02812 0.94703 0.98396 1.21806 0.91068 0.95035 0.85851 1.86549 1.69745 1.31286 1.47978 1.21572 1.02718 0.91953 0.98327 1.22131 0.97196 1.00050 0.99686 1.22614 0.95267 0.82244 1.01725 1.87968 1.84515 1.17049 1.39766 1.23378 0.94107 0.96367 0.90468 0.97385 0.90628 0.93541 0.99336 0.95353 0.92902 0.95571 0.91111 0.78559 0.94615 0.90635 0.84014 0.90781 0.95444 0.90701 0.89732 0.77732 0.90601 0.90402 0.90209 0.90917 0.88859 0.93266 0.92069 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.07 0.55 1.26 16 2 N -0.53 -11.47 4.70 -244.37 -1.15 -12.62 16 3 C 0.19 5.06 4.72 -4.98 -0.02 5.04 16 4 C -0.51 -14.39 8.46 -34.44 -0.29 -14.68 16 5 H 0.06 1.80 7.12 -52.48 -0.37 1.42 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.02 0.42 4.59 -3.83 -0.02 0.40 16 13 C 0.12 1.63 3.13 -26.73 -0.08 1.54 16 14 H 0.09 1.33 6.33 -51.93 -0.33 1.00 16 15 O -0.54 -8.35 13.15 -35.23 -0.46 -8.81 16 16 C 0.03 0.27 5.35 -3.82 -0.02 0.25 16 17 N -0.68 -6.57 6.37 -113.78 -0.72 -7.30 16 18 C 0.05 0.39 4.99 -3.82 -0.02 0.37 16 19 C -0.14 -1.00 4.78 -26.73 -0.13 -1.12 16 20 C 0.10 0.74 0.76 -90.48 -0.07 0.68 16 21 O -0.55 -4.63 12.39 -42.60 -0.53 -5.16 16 22 C -0.11 -0.72 5.04 -26.55 -0.13 -0.86 16 23 C -0.15 -1.00 5.98 -26.59 -0.16 -1.16 16 24 C 0.06 0.40 6.84 37.20 0.25 0.65 16 25 O -0.37 -3.48 10.70 -42.60 -0.46 -3.93 16 26 C 0.03 0.25 5.21 37.20 0.19 0.44 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 29 H 0.05 0.79 6.37 -51.93 -0.33 0.46 16 30 H -0.01 -0.31 8.12 -51.92 -0.42 -0.73 16 31 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.07 1.20 7.93 -51.93 -0.41 0.78 16 35 H 0.37 4.79 9.05 45.56 0.41 5.20 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.34 3.26 8.73 -39.29 -0.34 2.92 16 39 H 0.07 0.55 6.41 -51.93 -0.33 0.22 16 40 H 0.03 0.19 6.89 -51.93 -0.36 -0.17 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.37 2.27 7.53 45.56 0.34 2.62 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.65 7.83 -51.93 -0.41 0.24 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.10 0.66 6.51 -51.93 -0.34 0.32 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -32.92 395.42 -9.55 -42.47 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.86 Total: 4.44 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.04 Total: -5.74 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -1.14 Total: -46.04 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -1.45 Total: -17.90 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.92 -9.55 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356630275.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.737 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds