Wall clock time and date at job start Fri Apr 10 2020 14:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99771 * 2 1 4 4 C 1.50698 * 109.47400 * 293.95785 * 3 2 1 5 5 H 1.08004 * 119.99954 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00279 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99921 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00112 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46820 * 60.00407 * 8 6 4 10 10 H 1.48508 * 109.47025 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47263 * 300.00234 * 8 6 4 12 12 C 1.46898 * 110.99866 * 123.95477 * 2 1 3 13 13 C 1.52996 * 109.46907 * 66.05015 * 12 2 1 14 14 H 1.08996 * 109.47010 * 304.99047 * 13 12 2 15 15 O 1.42891 * 109.47391 * 64.99906 * 13 12 2 16 16 C 1.53004 * 109.46700 * 184.99598 * 13 12 2 17 17 N 1.46901 * 109.46916 * 179.97438 * 16 13 12 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.52993 * 109.47039 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47360 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.52162 * 64.87210 * 20 19 18 22 22 C 1.53173 * 109.52587 * 185.00006 * 20 19 18 23 23 C 1.53178 * 109.03884 * 176.88538 * 22 20 19 24 24 C 1.53088 * 109.16209 * 303.01890 * 23 22 20 25 25 O 1.42906 * 109.41531 * 57.60582 * 24 23 22 26 26 C 1.42904 * 114.09926 * 298.84376 * 25 24 23 27 27 H 1.08997 * 109.47263 * 296.04217 * 1 2 3 28 28 H 1.09001 * 109.47102 * 56.04386 * 1 2 3 29 29 H 1.09004 * 109.46599 * 176.04262 * 1 2 3 30 30 H 1.09009 * 109.47139 * 53.95390 * 3 2 1 31 31 H 1.09000 * 109.47524 * 173.95502 * 3 2 1 32 32 H 0.97000 * 120.00143 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47188 * 306.04366 * 12 2 1 34 34 H 1.08999 * 109.46615 * 186.05142 * 12 2 1 35 35 H 0.96703 * 114.00376 * 59.99604 * 15 13 12 36 36 H 1.09004 * 109.46889 * 60.00145 * 16 13 12 37 37 H 1.08995 * 109.47384 * 299.99786 * 16 13 12 38 38 H 1.00901 * 111.00067 * 303.95263 * 17 16 13 39 39 H 1.09001 * 109.46798 * 300.00327 * 18 17 16 40 40 H 1.08998 * 109.46961 * 60.00043 * 18 17 16 41 41 H 1.09001 * 109.47393 * 299.99719 * 19 18 17 42 42 H 1.08998 * 109.47408 * 60.00073 * 19 18 17 43 43 H 0.96702 * 114.00242 * 300.00330 * 21 20 19 44 44 H 1.09002 * 109.54174 * 296.75126 * 22 20 19 45 45 H 1.08996 * 109.54859 * 56.92606 * 22 20 19 46 46 H 1.09002 * 109.52099 * 62.92307 * 23 22 20 47 47 H 1.09001 * 109.52174 * 183.04899 * 23 22 20 48 48 H 1.09004 * 109.48207 * 177.58851 * 24 23 22 49 49 H 1.09003 * 109.48194 * 297.61773 * 24 23 22 50 50 H 1.08999 * 109.47995 * 301.17342 * 26 25 24 51 51 H 1.09004 * 109.47915 * 181.14224 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0266 3.3496 -1.5284 7 7 2.7109 4.0023 -0.6145 8 14 1.5827 4.1869 -3.1381 9 1 0.1056 4.2231 -3.2863 10 1 2.1148 5.5734 -3.1380 11 1 2.1754 3.4299 -4.2699 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2956 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2130 17 7 1.7201 -4.4376 2.0526 18 6 2.1266 -5.2166 3.2298 19 6 1.7470 -6.6846 3.0258 20 6 2.1698 -7.4959 4.2522 21 8 1.4220 -7.0648 5.3910 22 6 1.9044 -8.9830 3.9986 23 6 2.4028 -9.7916 5.2003 24 6 3.8883 -9.4964 5.4233 25 8 4.0691 -8.0928 5.6221 26 6 3.6643 -7.2894 4.5118 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 1.5610 1.9274 0.8310 31 1 3.0797 1.3445 0.1082 32 1 2.9855 4.9184 -0.7764 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1756 35 1 3.2602 -2.7165 -0.1361 36 1 1.5634 -2.6180 3.0904 37 1 3.1483 -2.9236 2.3400 38 1 0.7341 -4.5481 1.8691 39 1 3.2053 -5.1358 3.3641 40 1 1.6204 -4.8295 4.1141 41 1 0.6684 -6.7657 2.8913 42 1 2.2536 -7.0714 2.1416 43 1 1.5440 -6.1311 5.6112 44 1 0.8344 -9.1454 3.8684 45 1 2.4332 -9.2998 3.0997 46 1 1.8380 -9.5093 6.0888 47 1 2.2671 -10.8554 5.0051 48 1 4.2381 -10.0362 6.3033 49 1 4.4575 -9.8163 4.5505 50 1 4.2306 -7.5803 3.6270 51 1 3.8528 -6.2392 4.7352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356630275.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:18 Heat of formation + Delta-G solvation = -178.144944 kcal Electronic energy + Delta-G solvation = -26914.271933 eV Core-core repulsion = 23040.037011 eV Total energy + Delta-G solvation = -3874.234922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03166 -39.56594 -37.97042 -37.23492 -36.04929 -34.61688 -34.06358 -32.91781 -31.09392 -29.42142 -28.64626 -27.13165 -26.27955 -25.33437 -24.07394 -22.73332 -22.17202 -21.66766 -21.03281 -18.57070 -18.11699 -17.61823 -17.44055 -17.03935 -16.88524 -16.65501 -16.25522 -15.99897 -15.82807 -15.68737 -15.38101 -15.21732 -14.76528 -14.66683 -14.31740 -14.00784 -13.93541 -13.79011 -13.58056 -13.23690 -13.15343 -12.82833 -12.75494 -12.67641 -12.57430 -12.52827 -12.40403 -12.12050 -12.04819 -11.98824 -11.82456 -11.62364 -11.40508 -11.30569 -11.12160 -10.61801 -10.61332 -10.18121 -9.35776 -8.96352 -8.21043 -6.31062 1.40928 1.44302 1.52225 2.40004 2.83654 2.92694 3.11246 3.28448 3.39654 3.63237 3.73373 3.75915 3.87183 3.94055 4.03696 4.08564 4.20881 4.25323 4.27151 4.37683 4.42954 4.46933 4.52879 4.55763 4.59930 4.67532 4.70522 4.71988 4.77048 4.83085 4.86503 4.98219 5.05646 5.10946 5.11755 5.15138 5.17367 5.18736 5.30960 5.35733 5.64049 5.98914 6.05504 6.20757 6.31360 6.39722 6.63693 6.77523 6.84720 7.04785 7.38594 8.89620 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.040895 B = 0.001776 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.515587 B =15764.744918 C =15925.458756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.129 3.871 14 H 0.090 0.910 15 O -0.554 6.554 16 C 0.037 3.963 17 N -0.683 5.683 18 C 0.054 3.946 19 C -0.132 4.132 20 C 0.107 3.893 21 O -0.566 6.566 22 C -0.113 4.113 23 C -0.149 4.149 24 C 0.052 3.948 25 O -0.399 6.399 26 C 0.032 3.968 27 H 0.011 0.989 28 H 0.054 0.946 29 H 0.077 0.923 30 H -0.039 1.039 31 H 0.004 0.996 32 H 0.265 0.735 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.378 0.622 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.343 0.657 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.383 0.617 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -27.885 12.310 30.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.106 4.106 13 C 0.069 3.931 14 H 0.108 0.892 15 O -0.359 6.359 16 C -0.093 4.093 17 N -0.314 5.314 18 C -0.074 4.074 19 C -0.170 4.170 20 C 0.066 3.934 21 O -0.373 6.373 22 C -0.150 4.150 23 C -0.187 4.187 24 C -0.024 4.024 25 O -0.318 6.318 26 C -0.045 4.045 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.095 0.905 30 H -0.021 1.021 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.226 0.774 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.161 0.839 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.232 0.768 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.119 0.881 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.149 -28.753 11.534 30.981 hybrid contribution -0.391 2.302 0.807 2.471 sum -0.540 -26.451 12.341 29.193 Atomic orbital electron populations 1.22237 0.87879 1.01089 0.99652 1.61937 1.07952 1.14877 1.41724 1.19394 0.93657 0.83941 0.94894 1.21447 1.34957 0.97500 1.02437 0.92089 1.25920 0.95013 0.98034 1.00746 1.70073 1.39329 1.11896 1.36169 0.85429 0.78816 0.77154 0.79169 1.19264 1.20733 1.19403 1.22851 1.00332 0.95454 0.91918 1.21739 0.97325 0.88650 0.85428 0.89195 1.86551 1.23973 1.83831 1.41538 1.22529 1.01917 0.88349 0.96470 1.60333 1.23969 1.08157 1.38984 1.22081 1.01147 0.93023 0.91198 1.22100 1.02451 0.94248 0.98222 1.21811 0.90842 0.95329 0.85453 1.86533 1.70104 1.32162 1.48550 1.21647 1.02683 0.91758 0.98937 1.22093 0.96758 1.01078 0.98773 1.22779 0.95571 0.81327 1.02726 1.87929 1.84804 1.18301 1.40809 1.23456 0.94227 0.96476 0.90344 0.97054 0.92687 0.90462 1.02142 0.97783 0.92670 0.95024 0.91357 0.77415 0.93766 0.90110 0.83866 0.90439 0.94567 0.91107 0.89783 0.76799 0.91008 0.89060 0.92191 0.89190 0.88106 0.92003 0.91322 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.14 127.69 1.17 2.71 16 2 N -0.54 -23.48 4.70 -927.04 -4.36 -27.83 16 3 C 0.21 11.18 4.72 85.56 0.40 11.59 16 4 C -0.53 -30.28 8.46 25.60 0.22 -30.06 16 5 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 6 C 0.00 0.05 5.46 84.65 0.46 0.51 16 7 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 8 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 C 0.02 0.79 4.59 86.30 0.40 1.19 16 13 C 0.13 3.39 3.13 30.59 0.10 3.48 16 14 H 0.09 2.41 6.33 -2.39 -0.02 2.40 16 15 O -0.55 -16.44 13.15 -148.98 -1.96 -18.39 16 16 C 0.04 0.73 5.35 86.30 0.46 1.19 16 17 N -0.68 -11.82 6.37 -513.88 -3.27 -15.09 16 18 C 0.05 0.71 4.99 86.30 0.43 1.14 16 19 C -0.13 -1.61 4.78 30.59 0.15 -1.46 16 20 C 0.11 1.38 0.76 -10.70 -0.01 1.38 16 21 O -0.57 -8.98 12.39 -141.93 -1.76 -10.74 16 22 C -0.11 -1.35 5.04 30.71 0.15 -1.20 16 23 C -0.15 -1.78 5.98 30.68 0.18 -1.60 16 24 C 0.05 0.65 6.84 72.01 0.49 1.14 16 25 O -0.40 -7.02 10.70 -141.93 -1.52 -8.53 16 26 C 0.03 0.43 5.21 72.01 0.38 0.80 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.05 2.34 6.76 -2.39 -0.02 2.33 16 29 H 0.08 2.51 6.37 -2.38 -0.02 2.50 16 30 H -0.04 -2.27 8.12 -2.38 -0.02 -2.29 16 31 H 0.00 0.23 7.93 -2.39 -0.02 0.22 16 32 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 34 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 35 H 0.38 9.36 9.05 -74.06 -0.67 8.69 16 36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.34 5.83 8.73 -89.69 -0.78 5.04 16 39 H 0.08 0.98 6.41 -2.39 -0.02 0.96 16 40 H 0.04 0.42 6.89 -2.39 -0.02 0.41 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 43 H 0.38 4.23 7.53 -74.06 -0.56 3.67 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 0.96 7.83 -2.39 -0.02 0.94 16 47 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.10 1.22 6.51 -2.39 -0.02 1.21 16 Total: -1.00 -70.51 395.42 -6.66 -77.17 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -1.08 Total: 22.11 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 4.98 Total: -9.19 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -7.35 Total: -99.16 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -5.24 Total: -37.67 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.51 -6.66 -77.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356630275.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.976 kcal (2) G-P(sol) polarization free energy of solvation -70.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds