Wall clock time and date at job start Fri Apr 10 2020 14:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00002 * 2 1 4 4 C 1.50699 * 109.46777 * 66.04909 * 3 2 1 5 5 H 1.07994 * 120.00541 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99872 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99928 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00284 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46918 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47075 * 119.99697 * 8 6 4 11 11 H 1.48500 * 109.47242 * 240.00192 * 8 6 4 12 12 C 1.46902 * 111.00169 * 236.04827 * 2 1 3 13 13 C 1.52995 * 109.47257 * 199.85223 * 12 2 1 14 14 H 1.09005 * 109.47149 * 300.45977 * 13 12 2 15 15 O 1.42902 * 109.47324 * 60.46082 * 13 12 2 16 16 C 1.52997 * 109.47067 * 180.46135 * 13 12 2 17 17 N 1.46899 * 109.47248 * 179.97438 * 16 13 12 18 18 C 1.46897 * 111.00247 * 180.02562 * 17 16 13 19 19 C 1.52999 * 109.47560 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47606 * 179.97438 * 19 18 17 21 21 O 1.42904 * 109.51871 * 299.99800 * 20 19 18 22 22 C 1.53175 * 109.52446 * 179.87403 * 20 19 18 23 23 C 1.53168 * 109.03667 * 183.11352 * 22 20 19 24 24 C 1.53096 * 109.16346 * 56.97982 * 23 22 20 25 25 O 1.42899 * 109.41555 * 302.38960 * 24 23 22 26 26 C 1.42906 * 114.15161 * 61.12271 * 25 24 23 27 27 H 1.09002 * 109.46966 * 188.77479 * 1 2 3 28 28 H 1.08997 * 109.46867 * 308.76919 * 1 2 3 29 29 H 1.08991 * 109.47063 * 68.77441 * 1 2 3 30 30 H 1.09003 * 109.47106 * 186.04544 * 3 2 1 31 31 H 1.08999 * 109.47183 * 306.04529 * 3 2 1 32 32 H 0.96996 * 120.00540 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47264 * 79.84650 * 12 2 1 34 34 H 1.09007 * 109.46619 * 319.85197 * 12 2 1 35 35 H 0.96693 * 114.00156 * 60.00044 * 15 13 12 36 36 H 1.08996 * 109.47717 * 59.99800 * 16 13 12 37 37 H 1.09005 * 109.47455 * 299.99637 * 16 13 12 38 38 H 1.00901 * 111.00547 * 56.04468 * 17 16 13 39 39 H 1.09006 * 109.47364 * 299.99701 * 18 17 16 40 40 H 1.08998 * 109.47478 * 59.99355 * 18 17 16 41 41 H 1.09006 * 109.47044 * 299.99960 * 19 18 17 42 42 H 1.09002 * 109.46962 * 59.99700 * 19 18 17 43 43 H 0.96706 * 113.99939 * 60.00089 * 21 20 19 44 44 H 1.09001 * 109.54370 * 302.97958 * 22 20 19 45 45 H 1.08996 * 109.54507 * 63.15455 * 22 20 19 46 46 H 1.09006 * 109.52459 * 176.88754 * 23 22 20 47 47 H 1.09004 * 109.52367 * 297.07472 * 23 22 20 48 48 H 1.08994 * 109.47969 * 62.37592 * 24 23 22 49 49 H 1.09005 * 109.47874 * 182.40782 * 24 23 22 50 50 H 1.09002 * 109.53953 * 178.92497 * 26 25 24 51 51 H 1.09000 * 109.42773 * 58.88963 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0268 3.3494 1.5286 7 7 2.7119 4.0019 0.6150 8 14 1.5819 4.1872 3.1378 9 1 0.8148 3.2444 3.9911 10 1 2.8233 4.5947 3.8434 11 1 0.7542 5.3881 2.8584 12 6 1.9955 -0.7659 -1.1376 13 6 3.4449 -1.1666 -0.8557 14 1 4.0464 -0.2705 -0.7027 15 8 3.4945 -1.9798 0.3184 16 6 3.9968 -1.9545 -2.0454 17 7 5.3887 -2.3387 -1.7750 18 6 5.9530 -3.0981 -2.8987 19 6 7.4004 -3.4791 -2.5811 20 6 7.9881 -4.2705 -3.7512 21 8 7.2187 -5.4566 -3.9596 22 6 9.4382 -4.6499 -3.4357 23 6 10.0397 -5.3731 -4.6445 24 6 9.9300 -4.4703 -5.8761 25 8 8.5595 -4.1301 -6.0951 26 6 7.9562 -3.4110 -5.0176 27 1 -0.3633 -1.0157 0.1568 28 1 -0.3633 0.6435 0.8012 29 1 -0.3633 0.3720 -0.9579 30 1 3.0798 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 2.9865 4.9180 0.7770 33 1 1.9566 -0.1526 -2.0378 34 1 1.3923 -1.6623 -1.2824 35 1 2.9804 -2.7961 0.2535 36 1 3.9590 -1.3343 -2.9409 37 1 3.3954 -2.8506 -2.1983 38 1 5.4592 -2.8602 -0.9141 39 1 5.3655 -4.0023 -3.0577 40 1 5.9283 -2.4856 -3.8000 41 1 7.9878 -2.5746 -2.4224 42 1 7.4255 -4.0914 -1.6797 43 1 6.2886 -5.2909 -4.1662 44 1 10.0138 -3.7481 -3.2269 45 1 9.4623 -5.3072 -2.5667 46 1 11.0884 -5.5979 -4.4498 47 1 9.4945 -6.3001 -4.8227 48 1 10.5087 -3.5612 -5.7130 49 1 10.3177 -4.9967 -6.7483 50 1 6.9226 -3.1746 -5.2706 51 1 8.5084 -2.4874 -4.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356630285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:27 Heat of formation + Delta-G solvation = -150.724909 kcal Electronic energy + Delta-G solvation = -27131.203632 eV Core-core repulsion = 23258.157731 eV Total energy + Delta-G solvation = -3873.045900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.40491 -38.31213 -37.15553 -35.94366 -34.94398 -33.44969 -32.47570 -32.11556 -30.02257 -28.17164 -27.23983 -25.66119 -25.46973 -23.90713 -23.03507 -21.66912 -21.28771 -20.42867 -20.03361 -17.47926 -16.79158 -16.73382 -16.34068 -16.15208 -15.89621 -15.38601 -15.06538 -14.92215 -14.65977 -14.58457 -14.23208 -13.99731 -13.64881 -13.48008 -13.26797 -13.11884 -12.98778 -12.45365 -12.38546 -12.10754 -11.96731 -11.91942 -11.53543 -11.44694 -11.34000 -11.23213 -11.15577 -10.89222 -10.71163 -10.69408 -10.61430 -10.48743 -10.34038 -9.75373 -9.61629 -9.54884 -9.10378 -8.51844 -8.40419 -7.19561 -5.99684 -4.00058 3.33398 3.40643 3.45097 3.45938 3.82790 3.85306 4.25145 4.34736 4.43873 4.49207 4.59437 4.71779 4.75816 4.87643 4.90728 4.97366 5.01978 5.13341 5.18994 5.26850 5.28096 5.34541 5.38772 5.40928 5.42601 5.55749 5.57651 5.68515 5.70277 5.74748 5.77917 5.82715 5.93818 6.03116 6.13122 6.32114 6.52205 6.72733 6.78549 6.88590 7.28764 7.31337 7.32357 7.33676 7.82553 8.06081 8.12781 8.22920 8.57772 9.07459 9.63660 11.11451 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022307 B = 0.002057 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.937862 B =13609.547485 C =14109.288686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.111 0.889 15 O -0.540 6.540 16 C 0.029 3.971 17 N -0.681 5.681 18 C 0.053 3.947 19 C -0.144 4.144 20 C 0.105 3.895 21 O -0.550 6.550 22 C -0.108 4.108 23 C -0.153 4.153 24 C 0.058 3.942 25 O -0.375 6.375 26 C 0.034 3.966 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.007 0.993 30 H 0.032 0.968 31 H -0.012 1.012 32 H 0.260 0.740 33 H 0.033 0.967 34 H 0.058 0.942 35 H 0.359 0.641 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.349 0.651 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.374 0.626 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.049 0.951 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.359 -19.117 -12.451 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.129 0.871 15 O -0.343 6.343 16 C -0.101 4.101 17 N -0.313 5.313 18 C -0.076 4.076 19 C -0.182 4.182 20 C 0.063 3.937 21 O -0.356 6.356 22 C -0.146 4.146 23 C -0.190 4.190 24 C -0.018 4.018 25 O -0.294 6.294 26 C -0.043 4.043 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.026 0.974 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.203 0.797 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.169 0.831 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.222 0.778 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.067 0.933 49 H 0.111 0.889 50 H 0.116 0.884 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.713 -18.399 -12.093 25.424 hybrid contribution -1.699 0.140 0.024 1.705 sum 11.014 -18.260 -12.068 24.502 Atomic orbital electron populations 1.22226 0.88919 0.99907 1.00060 1.62029 1.06471 1.17847 1.39142 1.19778 0.95541 0.81470 0.96520 1.21193 1.34540 0.96769 1.01712 0.91822 1.24997 0.95373 0.97402 0.96983 1.69965 1.38553 1.11378 1.34030 0.86444 0.78149 0.79225 0.83617 1.19671 1.20995 1.21206 1.22661 0.95884 0.98097 0.93733 1.21973 0.95268 0.93845 0.83278 0.87146 1.86704 1.73223 1.35827 1.38518 1.22689 0.88287 0.98868 1.00226 1.60305 1.18780 1.47112 1.05150 1.22029 0.94405 0.95790 0.95366 1.22221 0.96393 1.01056 0.98545 1.21806 0.92435 0.85738 0.93734 1.86545 1.24884 1.31049 1.93126 1.21571 0.92721 1.01343 0.98946 1.22133 1.01346 1.00392 0.95179 1.22613 0.83063 0.97823 0.98341 1.87952 1.25249 1.75709 1.40450 1.23368 0.99470 0.94072 0.87402 0.93815 0.90435 0.97419 0.95025 0.99415 0.93036 0.94911 0.92377 0.79664 0.90365 0.95363 0.83138 0.95453 0.90936 0.89716 0.90665 0.77778 0.90385 0.90566 0.90933 0.90225 0.93261 0.88888 0.88420 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.37 60.06 0.56 1.29 16 2 N -0.53 -11.47 4.56 -244.37 -1.11 -12.58 16 3 C 0.19 5.05 4.55 -4.97 -0.02 5.03 16 4 C -0.50 -14.40 8.39 -34.44 -0.29 -14.69 16 5 H 0.06 1.82 7.16 -52.49 -0.38 1.44 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.03 0.45 4.66 -3.83 -0.02 0.43 16 13 C 0.12 1.85 3.30 -26.74 -0.09 1.77 16 14 H 0.11 2.18 6.78 -51.93 -0.35 1.82 16 15 O -0.54 -8.73 12.55 -35.23 -0.44 -9.17 16 16 C 0.03 0.35 5.39 -3.83 -0.02 0.33 16 17 N -0.68 -7.81 6.50 -113.78 -0.74 -8.55 16 18 C 0.05 0.47 5.03 -3.83 -0.02 0.45 16 19 C -0.14 -1.18 4.75 -26.73 -0.13 -1.30 16 20 C 0.10 0.84 0.76 -90.48 -0.07 0.77 16 21 O -0.55 -4.97 12.36 -42.59 -0.53 -5.50 16 22 C -0.11 -0.81 5.04 -26.55 -0.13 -0.95 16 23 C -0.15 -1.10 5.98 -26.59 -0.16 -1.26 16 24 C 0.06 0.43 6.84 37.21 0.25 0.69 16 25 O -0.38 -3.72 10.69 -42.59 -0.46 -4.17 16 26 C 0.03 0.28 5.36 37.20 0.20 0.48 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.64 6.66 -51.93 -0.35 1.29 16 29 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 30 H 0.03 0.89 6.63 -51.93 -0.34 0.55 16 31 H -0.01 -0.33 8.12 -51.93 -0.42 -0.76 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 34 H 0.06 0.84 7.94 -51.93 -0.41 0.43 16 35 H 0.36 4.33 9.04 45.56 0.41 4.74 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.35 4.03 8.12 -39.29 -0.32 3.71 16 39 H 0.03 0.21 6.78 -51.93 -0.35 -0.14 16 40 H 0.07 0.62 6.49 -51.93 -0.34 0.28 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.37 2.49 7.34 45.56 0.33 2.82 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.69 7.83 -51.93 -0.41 0.29 16 48 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.10 0.73 6.58 -51.93 -0.34 0.39 16 51 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -33.15 395.17 -9.52 -42.67 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.89 Total: 6.19 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.03 Total: -5.52 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -1.12 Total: -47.42 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.42 Total: -18.84 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.15 -9.52 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356630285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.053 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds