Wall clock time and date at job start Fri Apr 10 2020 14:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00002 * 2 1 4 4 C 1.50699 * 109.46777 * 66.04909 * 3 2 1 5 5 H 1.07994 * 120.00541 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99872 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99928 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00284 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46918 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47075 * 119.99697 * 8 6 4 11 11 H 1.48500 * 109.47242 * 240.00192 * 8 6 4 12 12 C 1.46902 * 111.00169 * 236.04827 * 2 1 3 13 13 C 1.52995 * 109.47257 * 199.85223 * 12 2 1 14 14 H 1.09005 * 109.47149 * 300.45977 * 13 12 2 15 15 O 1.42902 * 109.47324 * 60.46082 * 13 12 2 16 16 C 1.52997 * 109.47067 * 180.46135 * 13 12 2 17 17 N 1.46899 * 109.47248 * 179.97438 * 16 13 12 18 18 C 1.46897 * 111.00247 * 180.02562 * 17 16 13 19 19 C 1.52999 * 109.47560 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47606 * 179.97438 * 19 18 17 21 21 O 1.42904 * 109.51871 * 299.99800 * 20 19 18 22 22 C 1.53175 * 109.52446 * 179.87403 * 20 19 18 23 23 C 1.53168 * 109.03667 * 183.11352 * 22 20 19 24 24 C 1.53096 * 109.16346 * 56.97982 * 23 22 20 25 25 O 1.42899 * 109.41555 * 302.38960 * 24 23 22 26 26 C 1.42906 * 114.15161 * 61.12271 * 25 24 23 27 27 H 1.09002 * 109.46966 * 188.77479 * 1 2 3 28 28 H 1.08997 * 109.46867 * 308.76919 * 1 2 3 29 29 H 1.08991 * 109.47063 * 68.77441 * 1 2 3 30 30 H 1.09003 * 109.47106 * 186.04544 * 3 2 1 31 31 H 1.08999 * 109.47183 * 306.04529 * 3 2 1 32 32 H 0.96996 * 120.00540 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47264 * 79.84650 * 12 2 1 34 34 H 1.09007 * 109.46619 * 319.85197 * 12 2 1 35 35 H 0.96693 * 114.00156 * 60.00044 * 15 13 12 36 36 H 1.08996 * 109.47717 * 59.99800 * 16 13 12 37 37 H 1.09005 * 109.47455 * 299.99637 * 16 13 12 38 38 H 1.00901 * 111.00547 * 56.04468 * 17 16 13 39 39 H 1.09006 * 109.47364 * 299.99701 * 18 17 16 40 40 H 1.08998 * 109.47478 * 59.99355 * 18 17 16 41 41 H 1.09006 * 109.47044 * 299.99960 * 19 18 17 42 42 H 1.09002 * 109.46962 * 59.99700 * 19 18 17 43 43 H 0.96706 * 113.99939 * 60.00089 * 21 20 19 44 44 H 1.09001 * 109.54370 * 302.97958 * 22 20 19 45 45 H 1.08996 * 109.54507 * 63.15455 * 22 20 19 46 46 H 1.09006 * 109.52459 * 176.88754 * 23 22 20 47 47 H 1.09004 * 109.52367 * 297.07472 * 23 22 20 48 48 H 1.08994 * 109.47969 * 62.37592 * 24 23 22 49 49 H 1.09005 * 109.47874 * 182.40782 * 24 23 22 50 50 H 1.09002 * 109.53953 * 178.92497 * 26 25 24 51 51 H 1.09000 * 109.42773 * 58.88963 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0268 3.3494 1.5286 7 7 2.7119 4.0019 0.6150 8 14 1.5819 4.1872 3.1378 9 1 0.8148 3.2444 3.9911 10 1 2.8233 4.5947 3.8434 11 1 0.7542 5.3881 2.8584 12 6 1.9955 -0.7659 -1.1376 13 6 3.4449 -1.1666 -0.8557 14 1 4.0464 -0.2705 -0.7027 15 8 3.4945 -1.9798 0.3184 16 6 3.9968 -1.9545 -2.0454 17 7 5.3887 -2.3387 -1.7750 18 6 5.9530 -3.0981 -2.8987 19 6 7.4004 -3.4791 -2.5811 20 6 7.9881 -4.2705 -3.7512 21 8 7.2187 -5.4566 -3.9596 22 6 9.4382 -4.6499 -3.4357 23 6 10.0397 -5.3731 -4.6445 24 6 9.9300 -4.4703 -5.8761 25 8 8.5595 -4.1301 -6.0951 26 6 7.9562 -3.4110 -5.0176 27 1 -0.3633 -1.0157 0.1568 28 1 -0.3633 0.6435 0.8012 29 1 -0.3633 0.3720 -0.9579 30 1 3.0798 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 2.9865 4.9180 0.7770 33 1 1.9566 -0.1526 -2.0378 34 1 1.3923 -1.6623 -1.2824 35 1 2.9804 -2.7961 0.2535 36 1 3.9590 -1.3343 -2.9409 37 1 3.3954 -2.8506 -2.1983 38 1 5.4592 -2.8602 -0.9141 39 1 5.3655 -4.0023 -3.0577 40 1 5.9283 -2.4856 -3.8000 41 1 7.9878 -2.5746 -2.4224 42 1 7.4255 -4.0914 -1.6797 43 1 6.2886 -5.2909 -4.1662 44 1 10.0138 -3.7481 -3.2269 45 1 9.4623 -5.3072 -2.5667 46 1 11.0884 -5.5979 -4.4498 47 1 9.4945 -6.3001 -4.8227 48 1 10.5087 -3.5612 -5.7130 49 1 10.3177 -4.9967 -6.7483 50 1 6.9226 -3.1746 -5.2706 51 1 8.5084 -2.4874 -4.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356630285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:26 Heat of formation + Delta-G solvation = -180.012790 kcal Electronic energy + Delta-G solvation = -27132.473649 eV Core-core repulsion = 23258.157731 eV Total energy + Delta-G solvation = -3874.315918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.03835 -39.58403 -37.98566 -37.27626 -36.00738 -34.60349 -34.06925 -32.89732 -31.13976 -29.46316 -28.89075 -26.75279 -26.26153 -25.32420 -24.18182 -22.78317 -22.17310 -21.63250 -21.04930 -18.62128 -18.13297 -17.56124 -17.47850 -17.23567 -16.79779 -16.56803 -16.30966 -16.12575 -15.71274 -15.66097 -15.39925 -15.10365 -14.80090 -14.72674 -14.27768 -14.00113 -13.90302 -13.74921 -13.57911 -13.35390 -13.13397 -12.87672 -12.75957 -12.67547 -12.56500 -12.53986 -12.28814 -12.17661 -12.13773 -12.05775 -11.82846 -11.51730 -11.33680 -11.29698 -11.14117 -10.71239 -10.61381 -10.19214 -9.35894 -8.94547 -8.20339 -6.29679 1.39676 1.41201 1.54574 2.40409 2.82965 2.93715 3.12157 3.27525 3.40531 3.62327 3.71337 3.74857 3.85101 3.99664 4.03103 4.10624 4.17156 4.27026 4.30049 4.37160 4.43145 4.44903 4.52852 4.57139 4.59184 4.63949 4.69659 4.78054 4.79473 4.82793 4.86098 4.97921 5.08644 5.09016 5.09603 5.14439 5.17345 5.26387 5.30839 5.35128 5.65300 6.02715 6.08132 6.19580 6.35144 6.43417 6.65415 6.77336 6.86628 7.05514 7.39572 8.91049 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022307 B = 0.002057 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.937862 B =13609.547485 C =14109.288686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.522 4.522 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.026 3.974 13 C 0.125 3.875 14 H 0.062 0.938 15 O -0.558 6.558 16 C 0.044 3.956 17 N -0.698 5.698 18 C 0.057 3.943 19 C -0.135 4.135 20 C 0.110 3.890 21 O -0.563 6.563 22 C -0.114 4.114 23 C -0.149 4.149 24 C 0.052 3.948 25 O -0.398 6.398 26 C 0.032 3.968 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.012 0.988 30 H 0.003 0.997 31 H -0.042 1.042 32 H 0.264 0.736 33 H 0.028 0.972 34 H 0.096 0.904 35 H 0.379 0.621 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.348 0.652 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.383 0.617 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.103 0.897 50 H 0.103 0.897 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.996 -20.489 -12.295 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.200 4.200 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.205 1.205 11 H -0.202 1.202 12 C -0.103 4.103 13 C 0.065 3.935 14 H 0.080 0.920 15 O -0.364 6.364 16 C -0.086 4.086 17 N -0.330 5.330 18 C -0.072 4.072 19 C -0.173 4.173 20 C 0.068 3.932 21 O -0.371 6.371 22 C -0.151 4.151 23 C -0.186 4.186 24 C -0.024 4.024 25 O -0.317 6.317 26 C -0.045 4.045 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.021 0.979 31 H -0.024 1.024 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.115 0.885 35 H 0.226 0.774 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.167 0.833 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.233 0.767 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.121 0.879 50 H 0.121 0.879 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.333 -19.805 -11.950 26.213 hybrid contribution -1.577 0.498 -0.056 1.655 sum 10.756 -19.307 -12.006 25.151 Atomic orbital electron populations 1.22249 0.87504 1.01745 0.99462 1.61942 1.07873 1.15073 1.41730 1.19372 0.93682 0.83960 0.94660 1.21514 1.34606 0.97404 1.02479 0.92066 1.25941 0.95108 0.98153 1.00748 1.70091 1.39470 1.11851 1.36144 0.85329 0.78062 0.78190 0.79001 1.18759 1.20480 1.20239 1.22795 0.97072 0.98634 0.91821 1.21691 0.93945 0.93014 0.84848 0.92014 1.86652 1.73908 1.36929 1.38870 1.22458 0.88998 0.99263 0.97922 1.60267 1.18555 1.48175 1.06045 1.22048 0.94654 0.96149 0.94371 1.22116 0.96053 1.00666 0.98464 1.21767 0.92609 0.85385 0.93428 1.86530 1.25761 1.31679 1.93163 1.21646 0.92677 1.01816 0.98964 1.22094 1.02134 0.99446 0.94948 1.22788 0.82245 0.98478 0.98919 1.87916 1.26485 1.76008 1.41273 1.23434 0.99818 0.94087 0.87167 0.90003 0.92727 0.96951 0.97914 1.02399 0.92734 0.95426 0.88533 0.77376 0.90415 0.92594 0.83255 0.93834 0.90678 0.90307 0.91087 0.76742 0.89359 0.90917 0.89170 0.91932 0.92208 0.87892 0.87941 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 9.37 127.69 1.20 2.65 16 2 N -0.54 -23.39 4.56 -927.05 -4.22 -27.62 16 3 C 0.21 11.45 4.55 85.56 0.39 11.84 16 4 C -0.52 -30.48 8.39 25.60 0.21 -30.26 16 5 H 0.06 3.53 7.16 -2.91 -0.02 3.51 16 6 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 7 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 8 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 9 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.03 0.86 4.66 86.30 0.40 1.26 16 13 C 0.13 3.97 3.30 30.59 0.10 4.07 16 14 H 0.06 2.57 6.78 -2.38 -0.02 2.56 16 15 O -0.56 -17.51 12.55 -148.98 -1.87 -19.38 16 16 C 0.04 0.98 5.39 86.30 0.47 1.45 16 17 N -0.70 -15.25 6.50 -513.90 -3.34 -18.59 16 18 C 0.06 0.89 5.03 86.30 0.43 1.33 16 19 C -0.13 -2.06 4.75 30.59 0.15 -1.91 16 20 C 0.11 1.64 0.76 -10.70 -0.01 1.63 16 21 O -0.56 -9.52 12.36 -141.94 -1.75 -11.27 16 22 C -0.11 -1.58 5.04 30.71 0.15 -1.43 16 23 C -0.15 -1.97 5.98 30.68 0.18 -1.79 16 24 C 0.05 0.71 6.84 72.01 0.49 1.21 16 25 O -0.40 -7.52 10.69 -141.94 -1.52 -9.04 16 26 C 0.03 0.49 5.36 72.01 0.39 0.88 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 2.29 6.66 -2.39 -0.02 2.28 16 29 H 0.01 0.44 8.13 -2.39 -0.02 0.42 16 30 H 0.00 0.17 6.63 -2.39 -0.02 0.15 16 31 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.03 0.95 8.00 -2.39 -0.02 0.93 16 34 H 0.10 2.47 7.94 -2.38 -0.02 2.45 16 35 H 0.38 8.24 9.04 -74.06 -0.67 7.57 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.35 7.68 8.12 -89.69 -0.73 6.95 16 39 H 0.04 0.56 6.78 -2.38 -0.02 0.55 16 40 H 0.07 1.17 6.49 -2.39 -0.02 1.15 16 41 H 0.08 1.30 8.14 -2.38 -0.02 1.29 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.38 4.50 7.34 -74.05 -0.54 3.95 16 44 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.06 1.05 7.83 -2.38 -0.02 1.03 16 48 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 49 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.10 1.42 6.58 -2.39 -0.02 1.40 16 51 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.04 395.17 -6.40 -79.44 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -1.02 Total: 25.01 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 5.02 Total: -8.73 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -7.28 Total: -103.45 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -5.14 Total: -39.69 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.04 -6.40 -79.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356630285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.575 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds