Wall clock time and date at job start Fri Apr 10 2020 14:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99582 * 2 1 4 4 C 1.50701 * 109.47106 * 293.95129 * 3 2 1 5 5 H 1.08006 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99938 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00134 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99837 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47367 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47067 * 120.00340 * 8 6 4 11 11 H 1.48503 * 109.47442 * 240.00205 * 8 6 4 12 12 C 1.46904 * 110.99872 * 123.94988 * 2 1 3 13 13 C 1.52996 * 109.46872 * 164.01433 * 12 2 1 14 14 H 1.09000 * 109.46922 * 58.51147 * 13 12 2 15 15 O 1.42896 * 109.47179 * 298.50901 * 13 12 2 16 16 C 1.53001 * 109.46774 * 178.51044 * 13 12 2 17 17 N 1.46904 * 109.46924 * 184.99989 * 16 13 12 18 18 C 1.46903 * 111.00192 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47279 * 179.97438 * 18 17 16 20 20 C 1.52994 * 109.46839 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.57768 * 300.15729 * 20 19 18 22 22 C 1.53182 * 109.52265 * 180.02562 * 20 19 18 23 23 C 1.53171 * 109.11179 * 183.16063 * 22 20 19 24 24 C 1.53089 * 109.16413 * 56.93557 * 23 22 20 25 25 O 1.42903 * 109.41651 * 302.38897 * 24 23 22 26 26 C 1.42909 * 114.09434 * 61.15850 * 25 24 23 27 27 H 1.08998 * 109.47433 * 301.53330 * 1 2 3 28 28 H 1.09002 * 109.46885 * 61.53692 * 1 2 3 29 29 H 1.09004 * 109.46787 * 181.53067 * 1 2 3 30 30 H 1.08999 * 109.47091 * 53.95252 * 3 2 1 31 31 H 1.09004 * 109.46994 * 173.95263 * 3 2 1 32 32 H 0.96993 * 119.99690 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.46988 * 44.01526 * 12 2 1 34 34 H 1.09003 * 109.47081 * 284.01403 * 12 2 1 35 35 H 0.96700 * 114.00260 * 300.00305 * 15 13 12 36 36 H 1.08991 * 109.47543 * 65.00118 * 16 13 12 37 37 H 1.08999 * 109.47322 * 304.99368 * 16 13 12 38 38 H 1.00905 * 111.00004 * 56.04798 * 17 16 13 39 39 H 1.09002 * 109.47098 * 59.99770 * 18 17 16 40 40 H 1.09002 * 109.46510 * 300.00151 * 18 17 16 41 41 H 1.09000 * 109.46913 * 60.00347 * 19 18 17 42 42 H 1.08998 * 109.47230 * 300.00286 * 19 18 17 43 43 H 0.96702 * 114.00357 * 59.84363 * 21 20 19 44 44 H 1.09003 * 109.54205 * 63.24225 * 22 20 19 45 45 H 1.09002 * 109.53995 * 303.07274 * 22 20 19 46 46 H 1.09000 * 109.52326 * 176.84460 * 23 22 20 47 47 H 1.09000 * 109.52204 * 297.02947 * 23 22 20 48 48 H 1.09003 * 109.48380 * 62.37265 * 24 23 22 49 49 H 1.09006 * 109.48275 * 182.40719 * 24 23 22 50 50 H 1.09001 * 109.47888 * 58.82119 * 26 25 24 51 51 H 1.08999 * 109.48232 * 178.84868 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5111 -2.0489 6 6 2.0275 3.3492 -1.5289 7 7 2.7135 4.0013 -0.6158 8 14 1.5837 4.1864 -3.1387 9 1 0.8155 3.2441 -3.9914 10 1 0.7567 5.3880 -2.8602 11 1 2.8257 4.5929 -3.8441 12 6 1.9955 -0.7659 1.1377 13 6 3.4728 -1.0838 0.8985 14 1 4.0281 -0.1547 0.7699 15 8 3.6035 -1.8837 -0.2783 16 6 4.0307 -1.8493 2.1001 17 7 5.4754 -2.0499 1.9250 18 6 6.0468 -2.7829 3.0626 19 6 7.5493 -2.9727 2.8442 20 6 8.1444 -3.7354 4.0294 21 8 7.9258 -2.9966 5.2329 22 6 9.6488 -3.9256 3.8124 23 6 10.2205 -4.7577 4.9643 24 6 9.4716 -6.0907 5.0412 25 8 8.0752 -5.8418 5.2146 26 6 7.4760 -5.1080 4.1446 27 1 -0.3634 0.5374 0.8759 28 1 -0.3633 0.4898 -0.9035 29 1 -0.3633 -1.0274 0.0275 30 1 1.5610 1.9274 0.8309 31 1 3.0797 1.3445 0.1083 32 1 2.9886 4.9172 -0.7781 33 1 1.4357 -1.6955 1.2399 34 1 1.8933 -0.1780 2.0499 35 1 3.1335 -2.7277 -0.2345 36 1 3.5360 -2.8176 2.1756 37 1 3.8511 -1.2775 3.0105 38 1 5.9488 -1.1694 1.7880 39 1 5.5661 -3.7577 3.1453 40 1 5.8811 -2.2171 3.9794 41 1 8.0303 -1.9980 2.7614 42 1 7.7146 -3.5385 1.9275 43 1 6.9931 -2.8385 5.4334 44 1 10.1394 -2.9525 3.7869 45 1 9.8184 -4.4441 2.8687 46 1 11.2798 -4.9446 4.7879 47 1 10.0965 -4.2156 5.9018 48 1 9.6293 -6.6501 4.1190 49 1 9.8453 -6.6695 5.8860 50 1 7.6078 -5.6545 3.2107 51 1 6.4121 -4.9789 4.3433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356630286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:31 Heat of formation + Delta-G solvation = -149.202909 kcal Electronic energy + Delta-G solvation = -27145.931479 eV Core-core repulsion = 23272.951577 eV Total energy + Delta-G solvation = -3872.979901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.40170 -38.24208 -37.15914 -35.91233 -34.92864 -33.44700 -32.48044 -32.12380 -29.96572 -28.14515 -27.26097 -25.66442 -25.45879 -23.89678 -23.04001 -21.75780 -21.28557 -20.42168 -19.99541 -17.47606 -16.81352 -16.60212 -16.48910 -16.14536 -15.68665 -15.27884 -15.11267 -14.94876 -14.65965 -14.57844 -14.30026 -13.97546 -13.64955 -13.36356 -13.29797 -13.15163 -12.98583 -12.71240 -12.18224 -12.08443 -11.95746 -11.85932 -11.53248 -11.46510 -11.32238 -11.22706 -11.14580 -10.93293 -10.70832 -10.70111 -10.62007 -10.47704 -10.35072 -9.75140 -9.56630 -9.48166 -9.10888 -8.49334 -8.41156 -7.20221 -6.01260 -4.01377 3.32697 3.39957 3.44601 3.45442 3.83211 3.86574 4.25099 4.34890 4.43450 4.48732 4.59607 4.72152 4.78312 4.85971 4.95003 4.96986 5.01703 5.13358 5.17590 5.26742 5.29916 5.33687 5.37884 5.42452 5.44758 5.56681 5.61138 5.68357 5.70169 5.72250 5.75654 5.83840 5.94455 6.03260 6.09451 6.33433 6.48464 6.71633 6.77493 6.87804 7.24764 7.28105 7.31318 7.33902 7.81860 8.09094 8.17901 8.26256 8.56860 9.06159 9.62520 11.09984 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.002065 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.736175 B =13557.245269 C =14178.637988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.101 0.899 15 O -0.531 6.531 16 C 0.028 3.972 17 N -0.678 5.678 18 C 0.053 3.947 19 C -0.144 4.144 20 C 0.104 3.896 21 O -0.549 6.549 22 C -0.109 4.109 23 C -0.153 4.153 24 C 0.059 3.941 25 O -0.375 6.375 26 C 0.035 3.965 27 H 0.010 0.990 28 H 0.074 0.926 29 H 0.043 0.957 30 H -0.012 1.012 31 H 0.031 0.969 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.360 0.640 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.345 0.655 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.375 0.625 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.049 0.951 49 H 0.093 0.907 50 H 0.061 0.939 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.252 -19.568 12.241 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.119 0.881 15 O -0.333 6.333 16 C -0.102 4.102 17 N -0.309 5.309 18 C -0.076 4.076 19 C -0.182 4.182 20 C 0.063 3.937 21 O -0.356 6.356 22 C -0.146 4.146 23 C -0.191 4.191 24 C -0.018 4.018 25 O -0.293 6.293 26 C -0.042 4.042 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.005 0.995 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.205 0.795 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.164 0.836 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.223 0.777 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.067 0.933 49 H 0.111 0.889 50 H 0.079 0.921 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.322 -19.749 11.429 25.932 hybrid contribution -1.305 1.434 0.636 2.040 sum 11.017 -18.315 12.065 24.543 Atomic orbital electron populations 1.22199 0.88855 0.98887 1.00926 1.62042 1.06504 1.17825 1.39116 1.19781 0.95467 0.81484 0.96556 1.21197 1.34471 0.96766 1.01662 0.91805 1.24995 0.95366 0.97403 0.97021 1.69964 1.38613 1.11407 1.34089 0.86434 0.78148 0.79213 0.83587 1.19645 1.21216 1.20991 1.22682 0.95951 0.98205 0.93583 1.21870 0.94556 0.94020 0.83797 0.88127 1.86692 1.75406 1.33094 1.38120 1.22735 0.88780 1.00445 0.98259 1.60375 1.03257 1.26482 1.40757 1.22033 0.94499 0.98915 0.92197 1.22213 0.95317 1.02011 0.98643 1.21808 0.96167 0.90752 0.85014 1.86549 1.30888 1.76068 1.42077 1.21574 0.92915 1.01465 0.98651 1.22131 0.99708 0.96949 1.00280 1.22613 0.81526 0.96022 1.01661 1.87960 1.22408 1.74362 1.44616 1.23356 0.97925 0.91756 0.91196 0.97192 0.90769 0.93863 0.99460 0.95103 0.93052 0.92111 0.95335 0.79475 0.90988 0.94625 0.83618 0.91018 0.95375 0.90603 0.89755 0.77728 0.90533 0.90424 0.90926 0.90196 0.93295 0.88895 0.92128 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.32 60.07 0.56 1.34 16 2 N -0.53 -11.47 4.60 -244.36 -1.12 -12.59 16 3 C 0.19 5.03 4.57 -4.97 -0.02 5.01 16 4 C -0.50 -14.35 8.53 -34.44 -0.29 -14.64 16 5 H 0.06 1.82 7.10 -52.48 -0.37 1.45 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.95 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.03 0.44 4.63 -3.82 -0.02 0.42 16 13 C 0.12 1.89 3.17 -26.73 -0.08 1.81 16 14 H 0.10 1.93 6.55 -51.93 -0.34 1.59 16 15 O -0.53 -9.08 13.18 -35.23 -0.46 -9.54 16 16 C 0.03 0.34 5.32 -3.82 -0.02 0.32 16 17 N -0.68 -7.80 6.45 -113.78 -0.73 -8.53 16 18 C 0.05 0.46 5.03 -3.82 -0.02 0.44 16 19 C -0.14 -1.19 4.75 -26.73 -0.13 -1.31 16 20 C 0.10 0.84 0.76 -90.48 -0.07 0.77 16 21 O -0.55 -5.19 12.36 -42.60 -0.53 -5.72 16 22 C -0.11 -0.83 5.03 -26.55 -0.13 -0.96 16 23 C -0.15 -1.11 5.98 -26.60 -0.16 -1.27 16 24 C 0.06 0.43 6.84 37.20 0.25 0.68 16 25 O -0.38 -3.64 10.70 -42.60 -0.46 -4.10 16 26 C 0.03 0.28 5.35 37.21 0.20 0.48 16 27 H 0.01 0.19 8.13 -51.93 -0.42 -0.24 16 28 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 29 H 0.04 0.70 7.97 -51.93 -0.41 0.29 16 30 H -0.01 -0.35 8.11 -51.93 -0.42 -0.77 16 31 H 0.03 0.86 6.38 -51.93 -0.33 0.53 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 34 H 0.03 0.49 8.05 -51.93 -0.42 0.08 16 35 H 0.36 4.76 9.05 45.56 0.41 5.17 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.35 4.19 8.73 -39.29 -0.34 3.84 16 39 H 0.07 0.58 6.51 -51.93 -0.34 0.25 16 40 H 0.03 0.23 6.78 -51.93 -0.35 -0.12 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.37 2.66 7.34 45.56 0.33 2.99 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 48 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.10 0.70 6.59 -51.93 -0.34 0.36 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -33.29 395.83 -9.54 -42.83 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.89 Total: 6.44 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -0.03 Total: -5.49 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -1.12 Total: -47.34 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -1.45 Total: -19.35 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.29 -9.54 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356630286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.375 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds