Wall clock time and date at job start Fri Apr 10 2020 14:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99582 * 2 1 4 4 C 1.50701 * 109.47106 * 293.95129 * 3 2 1 5 5 H 1.08006 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99938 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00134 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99837 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47367 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47067 * 120.00340 * 8 6 4 11 11 H 1.48503 * 109.47442 * 240.00205 * 8 6 4 12 12 C 1.46904 * 110.99872 * 123.94988 * 2 1 3 13 13 C 1.52996 * 109.46872 * 164.01433 * 12 2 1 14 14 H 1.09000 * 109.46922 * 58.51147 * 13 12 2 15 15 O 1.42896 * 109.47179 * 298.50901 * 13 12 2 16 16 C 1.53001 * 109.46774 * 178.51044 * 13 12 2 17 17 N 1.46904 * 109.46924 * 184.99989 * 16 13 12 18 18 C 1.46903 * 111.00192 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47279 * 179.97438 * 18 17 16 20 20 C 1.52994 * 109.46839 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.57768 * 300.15729 * 20 19 18 22 22 C 1.53182 * 109.52265 * 180.02562 * 20 19 18 23 23 C 1.53171 * 109.11179 * 183.16063 * 22 20 19 24 24 C 1.53089 * 109.16413 * 56.93557 * 23 22 20 25 25 O 1.42903 * 109.41651 * 302.38897 * 24 23 22 26 26 C 1.42909 * 114.09434 * 61.15850 * 25 24 23 27 27 H 1.08998 * 109.47433 * 301.53330 * 1 2 3 28 28 H 1.09002 * 109.46885 * 61.53692 * 1 2 3 29 29 H 1.09004 * 109.46787 * 181.53067 * 1 2 3 30 30 H 1.08999 * 109.47091 * 53.95252 * 3 2 1 31 31 H 1.09004 * 109.46994 * 173.95263 * 3 2 1 32 32 H 0.96993 * 119.99690 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.46988 * 44.01526 * 12 2 1 34 34 H 1.09003 * 109.47081 * 284.01403 * 12 2 1 35 35 H 0.96700 * 114.00260 * 300.00305 * 15 13 12 36 36 H 1.08991 * 109.47543 * 65.00118 * 16 13 12 37 37 H 1.08999 * 109.47322 * 304.99368 * 16 13 12 38 38 H 1.00905 * 111.00004 * 56.04798 * 17 16 13 39 39 H 1.09002 * 109.47098 * 59.99770 * 18 17 16 40 40 H 1.09002 * 109.46510 * 300.00151 * 18 17 16 41 41 H 1.09000 * 109.46913 * 60.00347 * 19 18 17 42 42 H 1.08998 * 109.47230 * 300.00286 * 19 18 17 43 43 H 0.96702 * 114.00357 * 59.84363 * 21 20 19 44 44 H 1.09003 * 109.54205 * 63.24225 * 22 20 19 45 45 H 1.09002 * 109.53995 * 303.07274 * 22 20 19 46 46 H 1.09000 * 109.52326 * 176.84460 * 23 22 20 47 47 H 1.09000 * 109.52204 * 297.02947 * 23 22 20 48 48 H 1.09003 * 109.48380 * 62.37265 * 24 23 22 49 49 H 1.09006 * 109.48275 * 182.40719 * 24 23 22 50 50 H 1.09001 * 109.47888 * 58.82119 * 26 25 24 51 51 H 1.08999 * 109.48232 * 178.84868 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5111 -2.0489 6 6 2.0275 3.3492 -1.5289 7 7 2.7135 4.0013 -0.6158 8 14 1.5837 4.1864 -3.1387 9 1 0.8155 3.2441 -3.9914 10 1 0.7567 5.3880 -2.8602 11 1 2.8257 4.5929 -3.8441 12 6 1.9955 -0.7659 1.1377 13 6 3.4728 -1.0838 0.8985 14 1 4.0281 -0.1547 0.7699 15 8 3.6035 -1.8837 -0.2783 16 6 4.0307 -1.8493 2.1001 17 7 5.4754 -2.0499 1.9250 18 6 6.0468 -2.7829 3.0626 19 6 7.5493 -2.9727 2.8442 20 6 8.1444 -3.7354 4.0294 21 8 7.9258 -2.9966 5.2329 22 6 9.6488 -3.9256 3.8124 23 6 10.2205 -4.7577 4.9643 24 6 9.4716 -6.0907 5.0412 25 8 8.0752 -5.8418 5.2146 26 6 7.4760 -5.1080 4.1446 27 1 -0.3634 0.5374 0.8759 28 1 -0.3633 0.4898 -0.9035 29 1 -0.3633 -1.0274 0.0275 30 1 1.5610 1.9274 0.8309 31 1 3.0797 1.3445 0.1083 32 1 2.9886 4.9172 -0.7781 33 1 1.4357 -1.6955 1.2399 34 1 1.8933 -0.1780 2.0499 35 1 3.1335 -2.7277 -0.2345 36 1 3.5360 -2.8176 2.1756 37 1 3.8511 -1.2775 3.0105 38 1 5.9488 -1.1694 1.7880 39 1 5.5661 -3.7577 3.1453 40 1 5.8811 -2.2171 3.9794 41 1 8.0303 -1.9980 2.7614 42 1 7.7146 -3.5385 1.9275 43 1 6.9931 -2.8385 5.4334 44 1 10.1394 -2.9525 3.7869 45 1 9.8184 -4.4441 2.8687 46 1 11.2798 -4.9446 4.7879 47 1 10.0965 -4.2156 5.9018 48 1 9.6293 -6.6501 4.1190 49 1 9.8453 -6.6695 5.8860 50 1 7.6078 -5.6545 3.2107 51 1 6.4121 -4.9789 4.3433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356630286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:30 Heat of formation + Delta-G solvation = -178.716929 kcal Electronic energy + Delta-G solvation = -27147.211303 eV Core-core repulsion = 23272.951577 eV Total energy + Delta-G solvation = -3874.259725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.03124 -39.53923 -37.98272 -37.22221 -36.04657 -34.60633 -34.07242 -32.91079 -31.07748 -29.47203 -28.88188 -26.73120 -26.24938 -25.33184 -24.16509 -22.89484 -22.16969 -21.58472 -21.04562 -18.61990 -18.13557 -17.67013 -17.44765 -16.98452 -16.79357 -16.59204 -16.29094 -16.04686 -15.84136 -15.66440 -15.39717 -15.10272 -14.80789 -14.63629 -14.30464 -14.02958 -13.94693 -13.89107 -13.57934 -13.22294 -12.98607 -12.92806 -12.76440 -12.67058 -12.57957 -12.53796 -12.32484 -12.17948 -12.13469 -12.06897 -11.82500 -11.50546 -11.31076 -11.29353 -11.13530 -10.64238 -10.61259 -10.18501 -9.37610 -8.95059 -8.21370 -6.30402 1.39215 1.40616 1.54103 2.39864 2.83630 2.94293 3.11291 3.27537 3.39751 3.62248 3.74523 3.75470 3.86348 3.94425 4.03353 4.10826 4.21868 4.26332 4.29333 4.39172 4.42814 4.49341 4.53467 4.57171 4.60524 4.60910 4.70130 4.74555 4.77788 4.82511 4.85934 4.97772 5.07188 5.08974 5.11117 5.11839 5.17405 5.24301 5.30607 5.34937 5.64804 6.01322 6.07151 6.20155 6.30010 6.35008 6.65374 6.76480 6.85771 7.15017 7.38960 8.89969 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.002065 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.736175 B =13557.245269 C =14178.637988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.026 3.974 13 C 0.125 3.875 14 H 0.058 0.942 15 O -0.553 6.553 16 C 0.042 3.958 17 N -0.688 5.688 18 C 0.056 3.944 19 C -0.134 4.134 20 C 0.107 3.893 21 O -0.567 6.567 22 C -0.114 4.114 23 C -0.150 4.150 24 C 0.053 3.947 25 O -0.398 6.398 26 C 0.034 3.966 27 H 0.008 0.992 28 H 0.053 0.947 29 H 0.083 0.917 30 H -0.042 1.042 31 H 0.005 0.995 32 H 0.264 0.736 33 H 0.099 0.901 34 H 0.026 0.974 35 H 0.378 0.622 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.338 0.662 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.383 0.617 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.102 0.898 50 H 0.070 0.930 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.815 -21.407 11.895 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.104 4.104 13 C 0.064 3.936 14 H 0.076 0.924 15 O -0.358 6.358 16 C -0.088 4.088 17 N -0.319 5.319 18 C -0.073 4.073 19 C -0.173 4.173 20 C 0.066 3.934 21 O -0.375 6.375 22 C -0.151 4.151 23 C -0.187 4.187 24 C -0.023 4.023 25 O -0.317 6.317 26 C -0.043 4.043 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.102 0.898 30 H -0.025 1.025 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.044 0.956 35 H 0.226 0.774 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.155 0.845 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.232 0.768 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.120 0.880 50 H 0.088 0.912 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.869 -21.624 11.096 27.048 hybrid contribution -1.152 1.947 0.777 2.392 sum 10.717 -19.677 11.873 25.357 Atomic orbital electron populations 1.22222 0.87477 1.01171 0.99838 1.61944 1.07883 1.15118 1.41725 1.19386 0.93785 0.83892 0.94628 1.21519 1.34573 0.97415 1.02469 0.92122 1.25930 0.95110 0.98144 1.00747 1.70086 1.39480 1.11867 1.36147 0.85333 0.78071 0.78178 0.79031 1.18776 1.20277 1.20449 1.22818 0.96964 0.98854 0.91719 1.21665 0.93561 0.93090 0.85238 0.92381 1.86642 1.75990 1.34289 1.38886 1.22539 0.89227 1.00928 0.96103 1.60400 1.02970 1.26239 1.42273 1.22074 0.94646 0.99144 0.91430 1.22109 0.94940 1.01414 0.98802 1.21821 0.96526 0.90764 0.84324 1.86534 1.31827 1.76382 1.42723 1.21652 0.92631 1.01338 0.99520 1.22097 1.00833 0.96709 0.99076 1.22777 0.80538 0.96149 1.02843 1.87925 1.23623 1.74606 1.45521 1.23419 0.98185 0.91382 0.91288 0.97378 0.92765 0.89798 1.02465 0.97698 0.92751 0.88323 0.95622 0.77399 0.88584 0.94220 0.84499 0.89689 0.94722 0.91799 0.89692 0.76800 0.91379 0.89023 0.89196 0.92229 0.91894 0.87957 0.91164 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.32 127.69 1.19 2.75 16 2 N -0.54 -23.41 4.60 -927.02 -4.27 -27.67 16 3 C 0.21 11.37 4.57 85.56 0.39 11.76 16 4 C -0.52 -30.42 8.53 25.60 0.22 -30.21 16 5 H 0.06 3.50 7.10 -2.91 -0.02 3.48 16 6 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 7 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 8 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 9 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 C 0.03 0.84 4.63 86.30 0.40 1.24 16 13 C 0.12 3.97 3.17 30.59 0.10 4.07 16 14 H 0.06 2.35 6.55 -2.39 -0.02 2.33 16 15 O -0.55 -18.40 13.18 -148.98 -1.96 -20.37 16 16 C 0.04 0.95 5.32 86.30 0.46 1.41 16 17 N -0.69 -15.17 6.45 -513.88 -3.31 -18.48 16 18 C 0.06 0.89 5.03 86.30 0.43 1.32 16 19 C -0.13 -2.09 4.75 30.59 0.15 -1.94 16 20 C 0.11 1.62 0.76 -10.70 -0.01 1.61 16 21 O -0.57 -10.39 12.36 -141.94 -1.75 -12.14 16 22 C -0.11 -1.63 5.03 30.71 0.15 -1.47 16 23 C -0.15 -2.02 5.98 30.68 0.18 -1.83 16 24 C 0.05 0.70 6.84 72.01 0.49 1.19 16 25 O -0.40 -7.19 10.70 -141.94 -1.52 -8.71 16 26 C 0.03 0.49 5.35 72.02 0.39 0.87 16 27 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 28 H 0.05 2.24 6.90 -2.39 -0.02 2.22 16 29 H 0.08 2.48 7.97 -2.38 -0.02 2.46 16 30 H -0.04 -2.49 8.11 -2.39 -0.02 -2.50 16 31 H 0.00 0.29 6.38 -2.39 -0.02 0.28 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.10 2.52 7.88 -2.39 -0.02 2.50 16 34 H 0.03 0.87 8.05 -2.39 -0.02 0.85 16 35 H 0.38 9.14 9.05 -74.06 -0.67 8.47 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.34 8.29 8.73 -89.69 -0.78 7.51 16 39 H 0.08 1.15 6.51 -2.39 -0.02 1.14 16 40 H 0.03 0.52 6.78 -2.39 -0.02 0.50 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.38 5.13 7.34 -74.06 -0.54 4.59 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 1.05 7.84 -2.39 -0.02 1.03 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 50 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.10 1.28 6.59 -2.39 -0.02 1.26 16 Total: -1.00 -73.08 395.83 -6.57 -79.65 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -1.07 Total: 26.17 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.01 Total: -8.87 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -7.30 Total: -103.12 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -5.24 Total: -41.22 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -73.08 -6.57 -79.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356630286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.064 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds