Wall clock time and date at job start Fri Apr 10 2020 14:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47235 * 89.99847 * 8 6 4 10 10 H 1.48498 * 109.47219 * 209.99790 * 8 6 4 11 11 H 1.48501 * 109.46836 * 329.99929 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.52997 * 109.47254 * 293.95367 * 12 2 1 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 2 16 16 C 1.52992 * 109.47482 * 179.97438 * 13 12 2 17 17 N 1.46903 * 109.47578 * 185.00096 * 16 13 12 18 18 C 1.46903 * 111.00177 * 180.02562 * 17 16 13 19 19 C 1.52996 * 109.47090 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.54323 * 59.81655 * 19 18 17 21 21 O 1.42896 * 109.47570 * 300.00000 * 20 19 18 22 22 C 1.53177 * 109.54198 * 299.55568 * 19 18 17 23 23 C 1.53101 * 109.16263 * 297.11125 * 22 19 18 24 24 O 1.42905 * 109.41205 * 302.39378 * 23 22 19 25 25 C 1.42906 * 114.09878 * 61.15772 * 24 23 22 26 26 C 1.53087 * 109.41479 * 298.83872 * 25 24 23 27 27 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 28 28 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 29 29 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 30 30 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 31 31 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 32 32 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 34 34 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 35 35 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 36 36 H 1.09001 * 109.47563 * 305.00337 * 16 13 12 37 37 H 1.09004 * 109.47313 * 64.99993 * 16 13 12 38 38 H 1.00906 * 110.99766 * 303.95404 * 17 16 13 39 39 H 1.09001 * 109.46813 * 299.99603 * 18 17 16 40 40 H 1.08993 * 109.47342 * 59.99787 * 18 17 16 41 41 H 1.09007 * 109.46724 * 60.00440 * 20 19 18 42 42 H 1.09000 * 109.47111 * 179.97438 * 20 19 18 43 43 H 0.96693 * 113.99925 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.52821 * 57.01642 * 22 19 18 45 45 H 1.09008 * 109.52296 * 177.20874 * 22 19 18 46 46 H 1.08997 * 109.47770 * 182.41282 * 23 22 19 47 47 H 1.08997 * 109.48720 * 62.38238 * 23 22 19 48 48 H 1.09002 * 109.48185 * 178.85448 * 25 24 23 49 49 H 1.09003 * 109.48962 * 58.82936 * 25 24 23 50 50 H 1.09001 * 109.52374 * 297.70237 * 26 25 24 51 51 H 1.09005 * 109.52395 * 177.51539 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.6603 3.9509 4.1324 10 1 1.4300 5.6465 2.9111 11 1 0.3055 3.6292 3.6504 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2426 -0.9702 14 1 0.5473 -2.3476 -0.9321 15 8 2.2010 -2.7392 0.2428 16 6 2.1794 -3.0404 -2.1552 17 7 1.7289 -4.4352 -2.0568 18 6 2.2375 -5.2332 -3.1804 19 6 1.7480 -6.6763 -3.0437 20 6 0.2182 -6.7005 -3.0485 21 8 -0.2739 -5.9259 -1.9532 22 6 2.2676 -7.2715 -1.7314 23 6 3.7975 -7.3138 -1.7697 24 8 4.2234 -8.0786 -2.8993 25 6 3.8069 -7.5431 -4.1571 26 6 2.2774 -7.5101 -4.2146 27 1 -0.3632 -1.0253 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4511 -0.9233 30 1 3.0797 1.3445 -0.1083 31 1 1.5611 1.9273 -0.8310 32 1 2.9859 4.9182 0.7765 33 1 1.5612 -0.3873 -2.0628 34 1 3.0798 -0.6612 -1.1755 35 1 3.1653 -2.6771 0.2789 36 1 1.8145 -2.6056 -3.0858 37 1 3.2688 -3.0087 -2.1421 38 1 1.9996 -4.8411 -1.1735 39 1 1.8733 -4.8137 -4.1182 40 1 3.3273 -5.2167 -3.1739 41 1 -0.1489 -6.2802 -3.9849 42 1 -0.1292 -7.7291 -2.9515 43 1 -1.2386 -5.8965 -1.8944 44 1 1.9412 -6.6521 -0.8960 45 1 1.8782 -8.2825 -1.6105 46 1 4.1713 -7.7759 -0.8560 47 1 4.1874 -6.2991 -1.8498 48 1 4.1875 -8.1703 -4.9632 49 1 4.1968 -6.5314 -4.2687 50 1 1.8882 -8.5258 -4.1439 51 1 1.9579 -7.0612 -5.1552 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647239351.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:11 Heat of formation + Delta-G solvation = -138.427870 kcal Electronic energy + Delta-G solvation = -28027.703124 eV Core-core repulsion = 24155.190463 eV Total energy + Delta-G solvation = -3872.512661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.53475 -38.18993 -37.17467 -35.78643 -35.01702 -33.48801 -32.48443 -31.48124 -29.72620 -27.74159 -27.11413 -26.35698 -24.72633 -24.02205 -22.95224 -22.74827 -21.20263 -20.11171 -18.91997 -17.39535 -16.64529 -16.50537 -16.31227 -16.20638 -15.88199 -15.46609 -15.29185 -14.83392 -14.79961 -14.62864 -14.16995 -13.83223 -13.57488 -13.51745 -13.32938 -12.95089 -12.72332 -12.56767 -12.29677 -12.09245 -11.87512 -11.65776 -11.61752 -11.27643 -11.12437 -11.05288 -10.85473 -10.81615 -10.68483 -10.60575 -10.56964 -10.21957 -9.97089 -9.92205 -9.75504 -9.54338 -9.07319 -8.40894 -8.21467 -7.14396 -6.00297 -4.01000 3.34539 3.40019 3.44423 3.54608 3.87960 4.01928 4.31575 4.44124 4.52292 4.63038 4.72913 4.79094 4.83930 4.88295 5.00790 5.04929 5.20410 5.24403 5.25409 5.29119 5.33731 5.34831 5.39694 5.44289 5.45522 5.52891 5.57194 5.66265 5.75069 5.77428 5.83565 5.90411 5.99774 6.12687 6.27429 6.39016 6.49962 6.83407 6.85942 7.04517 7.31101 7.36760 7.49630 7.68308 7.83769 8.03495 8.14941 8.25480 8.59660 9.07336 9.63105 11.10781 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.002316 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.507911 B =12088.228876 C =12372.431173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.025 3.975 13 C 0.118 3.882 14 H 0.104 0.896 15 O -0.545 6.545 16 C 0.027 3.973 17 N -0.656 5.656 18 C 0.069 3.931 19 C -0.057 4.057 20 C 0.099 3.901 21 O -0.535 6.535 22 C -0.143 4.143 23 C 0.056 3.944 24 O -0.383 6.383 25 C 0.060 3.940 26 C -0.145 4.145 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.007 0.993 30 H 0.027 0.973 31 H -0.011 1.011 32 H 0.260 0.740 33 H 0.027 0.973 34 H 0.066 0.934 35 H 0.365 0.635 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.347 0.653 39 H 0.067 0.933 40 H 0.026 0.974 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.367 0.633 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.093 0.907 49 H 0.052 0.948 50 H 0.075 0.925 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.390 -25.125 -11.664 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.105 4.105 13 C 0.058 3.942 14 H 0.121 0.879 15 O -0.349 6.349 16 C -0.103 4.103 17 N -0.289 5.289 18 C -0.061 4.061 19 C -0.058 4.058 20 C 0.020 3.980 21 O -0.338 6.338 22 C -0.180 4.180 23 C -0.020 4.020 24 O -0.302 6.302 25 C -0.017 4.017 26 C -0.183 4.183 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.026 0.974 30 H 0.045 0.955 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.211 0.789 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.168 0.832 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.212 0.788 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.112 0.888 47 H 0.068 0.932 48 H 0.112 0.888 49 H 0.071 0.929 50 H 0.094 0.906 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.631 -25.233 -11.287 27.690 hybrid contribution 0.310 1.267 -0.260 1.330 sum -1.321 -23.966 -11.547 26.636 Atomic orbital electron populations 1.22242 0.88942 0.99704 1.00237 1.62012 1.06891 1.17253 1.39135 1.19742 0.95201 0.81765 0.96583 1.21180 1.34585 0.96809 1.01664 0.91780 1.25000 0.95376 0.97366 0.97013 1.69962 1.38632 1.11437 1.34084 0.86485 0.78905 0.78332 0.83617 1.20627 1.21382 1.19828 1.22715 1.00218 0.94159 0.93415 1.21934 0.99020 0.90569 0.82720 0.87866 1.86605 1.24630 1.84911 1.38736 1.22691 0.97005 0.90370 1.00249 1.60329 1.62774 1.00711 1.05074 1.22002 0.96218 0.92074 0.95781 1.20664 0.94812 0.94911 0.95397 1.21895 0.92752 0.93450 0.89894 1.86764 1.24963 1.73182 1.48913 1.22187 0.95711 1.01940 0.98204 1.22680 0.94158 0.95942 0.89250 1.87931 1.76258 1.51938 1.14081 1.22583 0.93417 0.99239 0.86471 1.22179 0.96976 1.00833 0.98320 0.93294 0.90798 0.97448 0.95484 0.99366 0.92994 0.95469 0.91531 0.78933 0.90839 0.95744 0.83181 0.91454 0.95644 0.94348 0.94819 0.78756 0.89272 0.91173 0.88756 0.93214 0.88848 0.92944 0.90645 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.14 60.07 0.55 1.31 16 2 N -0.53 -11.72 4.62 -244.37 -1.13 -12.85 16 3 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 4 C -0.50 -14.48 8.46 -34.44 -0.29 -14.77 16 5 H 0.06 1.84 7.12 -52.48 -0.37 1.46 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.02 0.44 4.62 -3.83 -0.02 0.42 16 13 C 0.12 1.74 3.07 -26.74 -0.08 1.66 16 14 H 0.10 1.67 6.55 -51.93 -0.34 1.33 16 15 O -0.55 -8.54 12.72 -35.23 -0.45 -8.99 16 16 C 0.03 0.33 5.36 -3.83 -0.02 0.31 16 17 N -0.66 -7.23 4.34 -113.78 -0.49 -7.72 16 18 C 0.07 0.64 4.09 -3.82 -0.02 0.62 16 19 C -0.06 -0.46 0.52 -154.32 -0.08 -0.54 16 20 C 0.10 0.78 5.93 37.16 0.22 1.00 16 21 O -0.54 -5.03 10.92 -35.23 -0.38 -5.42 16 22 C -0.14 -1.21 4.49 -26.59 -0.12 -1.33 16 23 C 0.06 0.48 6.57 37.21 0.24 0.73 16 24 O -0.38 -3.70 10.77 -35.23 -0.38 -4.08 16 25 C 0.06 0.44 6.57 37.20 0.24 0.68 16 26 C -0.14 -0.97 4.92 -26.59 -0.13 -1.10 16 27 H 0.05 0.89 6.47 -51.93 -0.34 0.55 16 28 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 29 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 31 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 35 H 0.36 4.73 9.05 45.56 0.41 5.14 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.35 4.08 6.29 -39.29 -0.25 3.83 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.24 5.01 -51.93 -0.26 -0.02 16 41 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 42 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.37 2.30 9.12 45.56 0.42 2.71 16 44 H 0.09 0.86 6.11 -51.93 -0.32 0.54 16 45 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.44 6.60 -51.93 -0.34 0.09 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.38 6.61 -51.93 -0.34 0.04 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -32.73 387.10 -8.44 -41.17 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.54 Total: 5.95 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 0.38 Total: -4.46 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.89 Total: -46.99 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.21 Total: -18.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.73 -8.44 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647239351.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.259 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds