Wall clock time and date at job start Fri Apr 10 2020 14:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47235 * 89.99847 * 8 6 4 10 10 H 1.48498 * 109.47219 * 209.99790 * 8 6 4 11 11 H 1.48501 * 109.46836 * 329.99929 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.52997 * 109.47254 * 293.95367 * 12 2 1 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 2 16 16 C 1.52992 * 109.47482 * 179.97438 * 13 12 2 17 17 N 1.46903 * 109.47578 * 185.00096 * 16 13 12 18 18 C 1.46903 * 111.00177 * 180.02562 * 17 16 13 19 19 C 1.52996 * 109.47090 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.54323 * 59.81655 * 19 18 17 21 21 O 1.42896 * 109.47570 * 300.00000 * 20 19 18 22 22 C 1.53177 * 109.54198 * 299.55568 * 19 18 17 23 23 C 1.53101 * 109.16263 * 297.11125 * 22 19 18 24 24 O 1.42905 * 109.41205 * 302.39378 * 23 22 19 25 25 C 1.42906 * 114.09878 * 61.15772 * 24 23 22 26 26 C 1.53087 * 109.41479 * 298.83872 * 25 24 23 27 27 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 28 28 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 29 29 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 30 30 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 31 31 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 32 32 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 34 34 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 35 35 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 36 36 H 1.09001 * 109.47563 * 305.00337 * 16 13 12 37 37 H 1.09004 * 109.47313 * 64.99993 * 16 13 12 38 38 H 1.00906 * 110.99766 * 303.95404 * 17 16 13 39 39 H 1.09001 * 109.46813 * 299.99603 * 18 17 16 40 40 H 1.08993 * 109.47342 * 59.99787 * 18 17 16 41 41 H 1.09007 * 109.46724 * 60.00440 * 20 19 18 42 42 H 1.09000 * 109.47111 * 179.97438 * 20 19 18 43 43 H 0.96693 * 113.99925 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.52821 * 57.01642 * 22 19 18 45 45 H 1.09008 * 109.52296 * 177.20874 * 22 19 18 46 46 H 1.08997 * 109.47770 * 182.41282 * 23 22 19 47 47 H 1.08997 * 109.48720 * 62.38238 * 23 22 19 48 48 H 1.09002 * 109.48185 * 178.85448 * 25 24 23 49 49 H 1.09003 * 109.48962 * 58.82936 * 25 24 23 50 50 H 1.09001 * 109.52374 * 297.70237 * 26 25 24 51 51 H 1.09005 * 109.52395 * 177.51539 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.6603 3.9509 4.1324 10 1 1.4300 5.6465 2.9111 11 1 0.3055 3.6292 3.6504 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2426 -0.9702 14 1 0.5473 -2.3476 -0.9321 15 8 2.2010 -2.7392 0.2428 16 6 2.1794 -3.0404 -2.1552 17 7 1.7289 -4.4352 -2.0568 18 6 2.2375 -5.2332 -3.1804 19 6 1.7480 -6.6763 -3.0437 20 6 0.2182 -6.7005 -3.0485 21 8 -0.2739 -5.9259 -1.9532 22 6 2.2676 -7.2715 -1.7314 23 6 3.7975 -7.3138 -1.7697 24 8 4.2234 -8.0786 -2.8993 25 6 3.8069 -7.5431 -4.1571 26 6 2.2774 -7.5101 -4.2146 27 1 -0.3632 -1.0253 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4511 -0.9233 30 1 3.0797 1.3445 -0.1083 31 1 1.5611 1.9273 -0.8310 32 1 2.9859 4.9182 0.7765 33 1 1.5612 -0.3873 -2.0628 34 1 3.0798 -0.6612 -1.1755 35 1 3.1653 -2.6771 0.2789 36 1 1.8145 -2.6056 -3.0858 37 1 3.2688 -3.0087 -2.1421 38 1 1.9996 -4.8411 -1.1735 39 1 1.8733 -4.8137 -4.1182 40 1 3.3273 -5.2167 -3.1739 41 1 -0.1489 -6.2802 -3.9849 42 1 -0.1292 -7.7291 -2.9515 43 1 -1.2386 -5.8965 -1.8944 44 1 1.9412 -6.6521 -0.8960 45 1 1.8782 -8.2825 -1.6105 46 1 4.1713 -7.7759 -0.8560 47 1 4.1874 -6.2991 -1.8498 48 1 4.1875 -8.1703 -4.9632 49 1 4.1968 -6.5314 -4.2687 50 1 1.8882 -8.5258 -4.1439 51 1 1.9579 -7.0612 -5.1552 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647239351.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:10 Heat of formation + Delta-G solvation = -166.642088 kcal Electronic energy + Delta-G solvation = -28028.926584 eV Core-core repulsion = 24155.190463 eV Total energy + Delta-G solvation = -3873.736121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.18879 -39.50551 -37.93457 -37.21707 -35.95330 -34.61895 -34.29712 -32.10585 -31.06720 -29.12768 -28.36353 -27.63208 -26.11637 -24.80882 -24.13649 -23.42214 -22.56505 -21.77470 -19.60470 -18.57325 -18.04449 -17.44211 -17.28231 -17.04019 -16.91232 -16.72389 -16.33116 -16.17584 -15.90837 -15.63856 -15.40398 -15.29853 -14.86223 -14.45854 -14.20489 -14.10431 -13.80017 -13.66422 -13.36331 -13.20745 -13.13890 -13.05765 -12.76609 -12.55116 -12.52891 -12.37185 -12.30107 -12.24904 -12.00425 -11.78294 -11.60389 -11.47485 -11.36536 -11.18852 -10.68291 -10.62277 -10.53745 -10.39624 -9.06869 -8.95987 -8.21318 -6.31170 1.40723 1.42428 1.53674 2.39984 2.92767 2.98617 3.11170 3.37249 3.45825 3.66731 3.72676 3.87836 3.99959 4.06168 4.12417 4.20690 4.25007 4.26736 4.30345 4.44054 4.47169 4.57482 4.62275 4.64373 4.68753 4.70927 4.72410 4.73774 4.78485 4.82560 4.85959 4.92844 5.02258 5.07060 5.15788 5.16566 5.18917 5.27724 5.32748 5.33582 5.64500 6.04074 6.18712 6.24237 6.32646 6.58728 6.64087 6.85028 6.97199 7.17885 7.38579 8.89820 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.002316 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.507911 B =12088.228876 C =12372.431173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.538 5.538 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.025 3.975 13 C 0.134 3.866 14 H 0.094 0.906 15 O -0.559 6.559 16 C 0.038 3.962 17 N -0.657 5.657 18 C 0.072 3.928 19 C -0.056 4.056 20 C 0.099 3.901 21 O -0.556 6.556 22 C -0.136 4.136 23 C 0.056 3.944 24 O -0.401 6.401 25 C 0.054 3.946 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.010 0.990 30 H 0.003 0.997 31 H -0.040 1.040 32 H 0.265 0.735 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.377 0.623 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.344 0.656 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.379 0.621 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.046 0.954 48 H 0.108 0.892 49 H 0.051 0.949 50 H 0.079 0.921 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 -26.303 -11.763 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.189 1.189 12 C -0.104 4.104 13 C 0.074 3.926 14 H 0.112 0.888 15 O -0.365 6.365 16 C -0.092 4.092 17 N -0.290 5.290 18 C -0.058 4.058 19 C -0.057 4.057 20 C 0.020 3.980 21 O -0.361 6.361 22 C -0.174 4.174 23 C -0.020 4.020 24 O -0.320 6.320 25 C -0.022 4.022 26 C -0.177 4.177 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.022 0.978 31 H -0.022 1.022 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.224 0.776 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.164 0.836 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.226 0.774 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.117 0.883 47 H 0.064 0.936 48 H 0.126 0.874 49 H 0.070 0.930 50 H 0.098 0.902 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.145 -26.439 -11.400 28.871 hybrid contribution 0.479 1.583 -0.279 1.677 sum -1.665 -24.856 -11.678 27.513 Atomic orbital electron populations 1.22203 0.87861 1.01030 0.99503 1.61933 1.07956 1.14763 1.41555 1.19401 0.93595 0.83998 0.94921 1.21467 1.34806 0.97480 1.02340 0.92093 1.25922 0.95023 0.98024 1.00752 1.70082 1.39449 1.11915 1.36167 0.85373 0.78978 0.77245 0.78970 1.19805 1.20633 1.18929 1.22827 1.00029 0.95595 0.91988 1.21714 0.98512 0.88673 0.83717 0.88824 1.86569 1.25840 1.84788 1.39261 1.22494 0.97236 0.90742 0.98760 1.60322 1.62937 1.00234 1.05486 1.22016 0.96205 0.92564 0.94980 1.20679 0.95080 0.94216 0.95698 1.21940 0.92488 0.93847 0.89687 1.86718 1.26270 1.73572 1.49562 1.22094 0.95584 1.01596 0.98104 1.22689 0.94216 0.95706 0.89388 1.87908 1.76668 1.52517 1.14953 1.22754 0.93975 0.99515 0.85994 1.22145 0.96364 1.00874 0.98317 0.90635 0.92695 0.97175 0.97849 1.02223 0.92665 0.95157 0.91626 0.77595 0.90521 0.95055 0.83592 0.91341 0.95624 0.93896 0.93885 0.77391 0.90523 0.91239 0.88315 0.93608 0.87357 0.93033 0.90246 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 9.14 127.69 1.17 2.89 16 2 N -0.54 -23.99 4.62 -927.04 -4.28 -28.27 16 3 C 0.21 11.34 4.72 85.56 0.40 11.75 16 4 C -0.52 -30.45 8.46 25.60 0.22 -30.23 16 5 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 6 C 0.00 0.03 5.46 84.66 0.46 0.49 16 7 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 8 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 12 C 0.02 0.88 4.62 86.30 0.40 1.28 16 13 C 0.13 3.82 3.07 30.59 0.09 3.91 16 14 H 0.09 2.89 6.55 -2.39 -0.02 2.88 16 15 O -0.56 -16.93 12.72 -148.98 -1.90 -18.83 16 16 C 0.04 0.86 5.36 86.30 0.46 1.32 16 17 N -0.66 -13.55 4.34 -513.90 -2.23 -15.78 16 18 C 0.07 1.20 4.09 86.30 0.35 1.56 16 19 C -0.06 -0.80 0.52 -52.06 -0.03 -0.83 16 20 C 0.10 1.37 5.93 71.98 0.43 1.80 16 21 O -0.56 -9.67 10.92 -148.98 -1.63 -11.29 16 22 C -0.14 -2.16 4.49 30.69 0.14 -2.02 16 23 C 0.06 0.92 6.57 72.02 0.47 1.39 16 24 O -0.40 -7.26 10.77 -148.98 -1.60 -8.87 16 25 C 0.05 0.70 6.57 72.01 0.47 1.17 16 26 C -0.14 -1.55 4.92 30.68 0.15 -1.40 16 27 H 0.08 2.65 6.47 -2.38 -0.02 2.64 16 28 H 0.05 2.42 6.76 -2.39 -0.02 2.40 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.00 0.20 7.93 -2.39 -0.02 0.18 16 31 H -0.04 -2.36 8.12 -2.38 -0.02 -2.38 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 34 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 35 H 0.38 9.39 9.05 -74.06 -0.67 8.72 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.34 7.67 6.29 -89.69 -0.56 7.11 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.03 0.44 5.01 -2.39 -0.01 0.43 16 41 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.38 4.24 9.12 -74.06 -0.68 3.56 16 44 H 0.08 1.42 6.11 -2.39 -0.01 1.41 16 45 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.05 0.77 6.60 -2.39 -0.02 0.75 16 48 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.05 0.67 6.61 -2.39 -0.02 0.66 16 50 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 51 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -69.67 387.10 -5.11 -74.78 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.98 Total: 24.86 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 5.19 Total: -6.93 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -6.23 Total: -100.85 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -5.13 Total: -38.99 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.67 -5.11 -74.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647239351.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.864 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds