Wall clock time and date at job start Fri Apr 10 2020 14:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99980 * 2 1 4 4 C 1.50698 * 109.47011 * 293.95325 * 3 2 1 5 5 H 1.08005 * 120.00255 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99900 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99940 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99764 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47006 * 90.00417 * 8 6 4 10 10 H 1.48504 * 109.46684 * 210.00144 * 8 6 4 11 11 H 1.48496 * 109.47407 * 330.00077 * 8 6 4 12 12 C 1.46900 * 111.00176 * 123.95390 * 2 1 3 13 13 C 1.53001 * 109.47195 * 66.04639 * 12 2 1 14 14 H 1.09000 * 109.47099 * 305.00222 * 13 12 2 15 15 O 1.42903 * 109.47258 * 64.99765 * 13 12 2 16 16 C 1.52995 * 109.47269 * 185.00144 * 13 12 2 17 17 N 1.46904 * 109.47337 * 179.97438 * 16 13 12 18 18 C 1.46894 * 111.00038 * 179.97438 * 17 16 13 19 19 C 1.53003 * 109.47259 * 174.35415 * 18 17 16 20 20 C 1.52999 * 109.54247 * 303.91698 * 19 18 17 21 21 O 1.42893 * 109.47277 * 300.88043 * 20 19 18 22 22 C 1.53175 * 109.54552 * 183.65036 * 19 18 17 23 23 C 1.53094 * 109.15933 * 297.11498 * 22 19 18 24 24 O 1.42904 * 109.41422 * 302.38750 * 23 22 19 25 25 C 1.42903 * 114.09605 * 61.16650 * 24 23 22 26 26 C 1.53092 * 109.41121 * 298.83860 * 25 24 23 27 27 H 1.08999 * 109.47093 * 296.04902 * 1 2 3 28 28 H 1.08998 * 109.47270 * 56.04802 * 1 2 3 29 29 H 1.09002 * 109.47368 * 176.04530 * 1 2 3 30 30 H 1.09000 * 109.47164 * 53.95496 * 3 2 1 31 31 H 1.08997 * 109.46834 * 173.95850 * 3 2 1 32 32 H 0.97003 * 119.99583 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46939 * 306.04692 * 12 2 1 34 34 H 1.09001 * 109.47175 * 186.04693 * 12 2 1 35 35 H 0.96706 * 113.99546 * 60.00303 * 15 13 12 36 36 H 1.09004 * 109.47118 * 60.00104 * 16 13 12 37 37 H 1.09000 * 109.47123 * 300.00062 * 16 13 12 38 38 H 1.00900 * 110.99615 * 56.04714 * 17 16 13 39 39 H 1.09003 * 109.47007 * 54.35476 * 18 17 16 40 40 H 1.09000 * 109.47032 * 294.35641 * 18 17 16 41 41 H 1.09002 * 109.46997 * 60.87687 * 20 19 18 42 42 H 1.09000 * 109.47255 * 180.87177 * 20 19 18 43 43 H 0.96694 * 114.00382 * 180.02562 * 21 20 19 44 44 H 1.08995 * 109.52469 * 57.01827 * 22 19 18 45 45 H 1.08994 * 109.52214 * 177.21199 * 22 19 18 46 46 H 1.09010 * 109.47863 * 182.41280 * 23 22 19 47 47 H 1.08995 * 109.49376 * 62.38359 * 23 22 19 48 48 H 1.08995 * 109.48102 * 178.85543 * 25 24 23 49 49 H 1.08996 * 109.49143 * 58.82356 * 25 24 23 50 50 H 1.09000 * 109.52288 * 297.70317 * 26 25 24 51 51 H 1.09004 * 109.52123 * 177.51501 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 2.7118 4.0018 -0.6150 8 14 1.5817 4.1872 -3.1378 9 1 0.2692 4.8673 -2.9953 10 1 2.6237 5.1887 -3.4791 11 1 1.4984 3.1717 -4.2180 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5532 -2.3389 0.8433 15 8 2.2956 -2.7696 -0.1801 16 6 2.0700 -3.0199 2.2131 17 7 1.7200 -4.4376 2.0528 18 6 2.1275 -5.2167 3.2295 19 6 1.6235 -6.6545 3.0888 20 6 0.1072 -6.6476 2.8846 21 8 -0.5208 -6.0127 4.0001 22 6 1.9682 -7.4446 4.3549 23 6 3.4902 -7.5109 4.5070 24 8 4.0583 -8.1113 3.3412 25 6 3.8087 -7.3902 2.1330 26 6 2.2996 -7.3189 1.8856 27 1 -0.3633 0.4513 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3634 -1.0252 -0.0709 30 1 1.5611 1.9274 0.8309 31 1 3.0797 1.3444 0.1082 32 1 2.9864 4.9180 -0.7770 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6611 1.1756 35 1 3.2602 -2.7167 -0.1360 36 1 1.5634 -2.6179 3.0905 37 1 3.1482 -2.9236 2.3401 38 1 2.1252 -4.8170 1.2102 39 1 1.7016 -4.7686 4.1272 40 1 3.2149 -5.2187 3.3052 41 1 -0.1341 -6.1015 1.9726 42 1 -0.2527 -7.6730 2.8000 43 1 -1.4850 -5.9729 3.9385 44 1 1.5367 -6.9472 5.2235 45 1 1.5658 -8.4544 4.2750 46 1 3.7422 -8.1085 5.3831 47 1 3.8879 -6.5033 4.6276 48 1 4.2901 -7.9006 1.2990 49 1 4.2104 -6.3809 2.2222 50 1 1.9038 -8.3262 1.7558 51 1 2.1049 -6.7316 0.9881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647239363.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:15 Heat of formation + Delta-G solvation = -146.859539 kcal Electronic energy + Delta-G solvation = -27840.932786 eV Core-core repulsion = 23968.054501 eV Total energy + Delta-G solvation = -3872.878285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53590 -38.29027 -37.26237 -35.95069 -35.16690 -33.49368 -32.51683 -31.49500 -29.81253 -27.72087 -27.14179 -26.43704 -24.87522 -23.99529 -23.02662 -22.73869 -21.28194 -20.17621 -18.88991 -17.53439 -16.74973 -16.59415 -16.32669 -16.25870 -15.98467 -15.52800 -15.20411 -15.01255 -14.80064 -14.62835 -14.22224 -13.88999 -13.75552 -13.59022 -13.35172 -13.13613 -12.72149 -12.59020 -12.36566 -12.12209 -11.90752 -11.70161 -11.59628 -11.32535 -11.26086 -11.10046 -10.87159 -10.76449 -10.72747 -10.69105 -10.60382 -10.27179 -10.08046 -9.99502 -9.77733 -9.60455 -9.11045 -8.47220 -8.43551 -7.19043 -6.02412 -4.03335 3.32364 3.38355 3.43558 3.54889 3.78130 4.07070 4.31284 4.39823 4.43853 4.62324 4.69025 4.71998 4.80291 4.89521 4.92095 5.02841 5.17006 5.20378 5.27241 5.32308 5.33048 5.36759 5.40253 5.44002 5.47217 5.56408 5.59061 5.65932 5.71519 5.74893 5.79364 5.90391 6.00810 6.07001 6.20833 6.33597 6.42352 6.78386 6.85571 6.86274 7.27107 7.28780 7.33392 7.47118 7.80684 7.94087 8.10361 8.21155 8.56031 9.04742 9.60864 11.08615 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026548 B = 0.002258 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.432278 B =12397.620951 C =12739.812885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.025 3.975 13 C 0.115 3.885 14 H 0.103 0.897 15 O -0.547 6.547 16 C 0.029 3.971 17 N -0.679 5.679 18 C 0.069 3.931 19 C -0.053 4.053 20 C 0.097 3.903 21 O -0.569 6.569 22 C -0.140 4.140 23 C 0.057 3.943 24 O -0.383 6.383 25 C 0.060 3.940 26 C -0.149 4.149 27 H 0.008 0.992 28 H 0.074 0.926 29 H 0.047 0.953 30 H -0.011 1.011 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.366 0.634 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.343 0.657 39 H 0.079 0.921 40 H 0.027 0.973 41 H 0.062 0.938 42 H 0.034 0.966 43 H 0.377 0.623 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.051 0.949 48 H 0.095 0.905 49 H 0.051 0.949 50 H 0.074 0.926 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 -24.757 10.484 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.105 4.105 13 C 0.055 3.945 14 H 0.121 0.879 15 O -0.350 6.350 16 C -0.101 4.101 17 N -0.311 5.311 18 C -0.060 4.060 19 C -0.053 4.053 20 C 0.019 3.981 21 O -0.374 6.374 22 C -0.178 4.178 23 C -0.020 4.020 24 O -0.302 6.302 25 C -0.017 4.017 26 C -0.187 4.187 27 H 0.027 0.973 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.007 0.993 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.212 0.788 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.163 0.837 39 H 0.098 0.902 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.223 0.777 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.113 0.887 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.805 -24.931 10.303 27.037 hybrid contribution 0.311 1.368 -0.073 1.405 sum -1.494 -23.564 10.231 25.732 Atomic orbital electron populations 1.22255 0.88988 0.99607 1.00388 1.62033 1.06844 1.17395 1.39112 1.19742 0.95233 0.81664 0.96624 1.21171 1.34634 0.96835 1.01696 0.91796 1.24999 0.95327 0.97365 0.97035 1.69961 1.38518 1.11420 1.34151 0.86492 0.77966 0.79202 0.83742 1.20751 1.21272 1.19717 1.22710 1.00336 0.93936 0.93478 1.21990 0.98208 0.90694 0.83600 0.87885 1.86604 1.22750 1.83840 1.41842 1.22659 0.98346 0.89037 1.00031 1.60340 1.64100 1.01924 1.04771 1.22004 0.96784 0.92414 0.94817 1.20592 0.94586 0.94887 0.95273 1.22027 0.91475 0.95094 0.89493 1.86410 1.24157 1.82207 1.44601 1.22161 0.96487 1.00750 0.98414 1.22655 0.92699 0.98357 0.88303 1.87929 1.75888 1.51027 1.15374 1.22597 0.94770 0.96804 0.87487 1.22228 0.96335 1.01808 0.98325 0.97324 0.90715 0.93410 0.99319 0.95433 0.92964 0.95352 0.91374 0.78845 0.90348 0.95251 0.83718 0.90229 0.95477 0.91955 0.94752 0.77680 0.89994 0.91101 0.88951 0.93062 0.88663 0.93106 0.90738 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.53 -11.54 4.70 -244.37 -1.15 -12.69 16 3 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 4 C -0.50 -14.38 8.46 -34.44 -0.29 -14.67 16 5 H 0.06 1.82 7.12 -52.48 -0.37 1.44 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 12 C 0.03 0.44 4.60 -3.82 -0.02 0.42 16 13 C 0.11 1.63 3.19 -26.73 -0.09 1.54 16 14 H 0.10 1.59 6.34 -51.93 -0.33 1.26 16 15 O -0.55 -8.03 12.62 -35.23 -0.44 -8.48 16 16 C 0.03 0.34 5.38 -3.82 -0.02 0.32 16 17 N -0.68 -6.99 5.53 -113.78 -0.63 -7.61 16 18 C 0.07 0.65 3.87 -3.83 -0.01 0.63 16 19 C -0.05 -0.43 0.43 -154.33 -0.07 -0.50 16 20 C 0.10 0.81 5.71 37.16 0.21 1.02 16 21 O -0.57 -5.07 12.47 -35.23 -0.44 -5.51 16 22 C -0.14 -1.11 4.75 -26.59 -0.13 -1.24 16 23 C 0.06 0.45 6.57 37.21 0.24 0.69 16 24 O -0.38 -3.69 10.77 -35.23 -0.38 -4.07 16 25 C 0.06 0.48 6.57 37.20 0.24 0.72 16 26 C -0.15 -1.12 4.74 -26.59 -0.13 -1.25 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 1.61 6.76 -51.93 -0.35 1.25 16 29 H 0.05 0.84 6.37 -51.93 -0.33 0.50 16 30 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 31 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 35 H 0.37 4.33 9.05 45.56 0.41 4.75 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.34 3.47 6.49 -39.29 -0.26 3.21 16 39 H 0.08 0.86 7.77 -51.93 -0.40 0.46 16 40 H 0.03 0.25 5.02 -51.93 -0.26 -0.01 16 41 H 0.06 0.58 7.54 -51.93 -0.39 0.19 16 42 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.38 2.00 9.12 45.56 0.42 2.42 16 44 H 0.08 0.68 7.82 -51.93 -0.41 0.28 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 47 H 0.05 0.40 6.69 -51.93 -0.35 0.06 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.05 0.41 6.52 -51.93 -0.34 0.07 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.08 0.61 6.67 -51.93 -0.35 0.26 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -32.55 388.63 -8.58 -41.13 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.49 Total: 5.33 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 0.38 Total: -4.54 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -1.04 Total: -46.55 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -1.26 Total: -18.06 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.55 -8.58 -41.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647239363.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.728 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds