Wall clock time and date at job start Fri Apr 10 2020 14:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99980 * 2 1 4 4 C 1.50698 * 109.47011 * 293.95325 * 3 2 1 5 5 H 1.08005 * 120.00255 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99900 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99940 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99764 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47006 * 90.00417 * 8 6 4 10 10 H 1.48504 * 109.46684 * 210.00144 * 8 6 4 11 11 H 1.48496 * 109.47407 * 330.00077 * 8 6 4 12 12 C 1.46900 * 111.00176 * 123.95390 * 2 1 3 13 13 C 1.53001 * 109.47195 * 66.04639 * 12 2 1 14 14 H 1.09000 * 109.47099 * 305.00222 * 13 12 2 15 15 O 1.42903 * 109.47258 * 64.99765 * 13 12 2 16 16 C 1.52995 * 109.47269 * 185.00144 * 13 12 2 17 17 N 1.46904 * 109.47337 * 179.97438 * 16 13 12 18 18 C 1.46894 * 111.00038 * 179.97438 * 17 16 13 19 19 C 1.53003 * 109.47259 * 174.35415 * 18 17 16 20 20 C 1.52999 * 109.54247 * 303.91698 * 19 18 17 21 21 O 1.42893 * 109.47277 * 300.88043 * 20 19 18 22 22 C 1.53175 * 109.54552 * 183.65036 * 19 18 17 23 23 C 1.53094 * 109.15933 * 297.11498 * 22 19 18 24 24 O 1.42904 * 109.41422 * 302.38750 * 23 22 19 25 25 C 1.42903 * 114.09605 * 61.16650 * 24 23 22 26 26 C 1.53092 * 109.41121 * 298.83860 * 25 24 23 27 27 H 1.08999 * 109.47093 * 296.04902 * 1 2 3 28 28 H 1.08998 * 109.47270 * 56.04802 * 1 2 3 29 29 H 1.09002 * 109.47368 * 176.04530 * 1 2 3 30 30 H 1.09000 * 109.47164 * 53.95496 * 3 2 1 31 31 H 1.08997 * 109.46834 * 173.95850 * 3 2 1 32 32 H 0.97003 * 119.99583 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46939 * 306.04692 * 12 2 1 34 34 H 1.09001 * 109.47175 * 186.04693 * 12 2 1 35 35 H 0.96706 * 113.99546 * 60.00303 * 15 13 12 36 36 H 1.09004 * 109.47118 * 60.00104 * 16 13 12 37 37 H 1.09000 * 109.47123 * 300.00062 * 16 13 12 38 38 H 1.00900 * 110.99615 * 56.04714 * 17 16 13 39 39 H 1.09003 * 109.47007 * 54.35476 * 18 17 16 40 40 H 1.09000 * 109.47032 * 294.35641 * 18 17 16 41 41 H 1.09002 * 109.46997 * 60.87687 * 20 19 18 42 42 H 1.09000 * 109.47255 * 180.87177 * 20 19 18 43 43 H 0.96694 * 114.00382 * 180.02562 * 21 20 19 44 44 H 1.08995 * 109.52469 * 57.01827 * 22 19 18 45 45 H 1.08994 * 109.52214 * 177.21199 * 22 19 18 46 46 H 1.09010 * 109.47863 * 182.41280 * 23 22 19 47 47 H 1.08995 * 109.49376 * 62.38359 * 23 22 19 48 48 H 1.08995 * 109.48102 * 178.85543 * 25 24 23 49 49 H 1.08996 * 109.49143 * 58.82356 * 25 24 23 50 50 H 1.09000 * 109.52288 * 297.70317 * 26 25 24 51 51 H 1.09004 * 109.52123 * 177.51501 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 2.7118 4.0018 -0.6150 8 14 1.5817 4.1872 -3.1378 9 1 0.2692 4.8673 -2.9953 10 1 2.6237 5.1887 -3.4791 11 1 1.4984 3.1717 -4.2180 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5532 -2.3389 0.8433 15 8 2.2956 -2.7696 -0.1801 16 6 2.0700 -3.0199 2.2131 17 7 1.7200 -4.4376 2.0528 18 6 2.1275 -5.2167 3.2295 19 6 1.6235 -6.6545 3.0888 20 6 0.1072 -6.6476 2.8846 21 8 -0.5208 -6.0127 4.0001 22 6 1.9682 -7.4446 4.3549 23 6 3.4902 -7.5109 4.5070 24 8 4.0583 -8.1113 3.3412 25 6 3.8087 -7.3902 2.1330 26 6 2.2996 -7.3189 1.8856 27 1 -0.3633 0.4513 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3634 -1.0252 -0.0709 30 1 1.5611 1.9274 0.8309 31 1 3.0797 1.3444 0.1082 32 1 2.9864 4.9180 -0.7770 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6611 1.1756 35 1 3.2602 -2.7167 -0.1360 36 1 1.5634 -2.6179 3.0905 37 1 3.1482 -2.9236 2.3401 38 1 2.1252 -4.8170 1.2102 39 1 1.7016 -4.7686 4.1272 40 1 3.2149 -5.2187 3.3052 41 1 -0.1341 -6.1015 1.9726 42 1 -0.2527 -7.6730 2.8000 43 1 -1.4850 -5.9729 3.9385 44 1 1.5367 -6.9472 5.2235 45 1 1.5658 -8.4544 4.2750 46 1 3.7422 -8.1085 5.3831 47 1 3.8879 -6.5033 4.6276 48 1 4.2901 -7.9006 1.2990 49 1 4.2104 -6.3809 2.2222 50 1 1.9038 -8.3262 1.7558 51 1 2.1049 -6.7316 0.9881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647239363.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:14 Heat of formation + Delta-G solvation = -175.703715 kcal Electronic energy + Delta-G solvation = -27842.183564 eV Core-core repulsion = 23968.054501 eV Total energy + Delta-G solvation = -3874.129063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.20137 -39.55074 -38.00368 -37.31863 -36.13582 -34.63061 -34.29412 -32.11128 -31.11952 -29.13782 -28.35643 -27.68043 -26.20246 -24.88217 -24.14879 -23.43421 -22.61059 -21.80963 -19.58477 -18.58103 -18.17990 -17.57445 -17.35925 -17.08678 -16.91684 -16.70649 -16.38199 -16.18233 -15.88238 -15.78390 -15.51160 -15.14059 -14.93349 -14.48391 -14.44123 -14.10210 -13.87195 -13.78484 -13.37588 -13.25586 -13.17825 -13.02268 -12.74390 -12.60129 -12.53424 -12.38954 -12.35318 -12.25425 -12.03201 -11.94213 -11.63006 -11.42162 -11.38032 -11.21808 -10.76584 -10.63980 -10.63032 -10.42913 -9.29522 -8.97613 -8.21667 -6.31587 1.40599 1.41959 1.54011 2.39640 2.88976 2.95122 3.10873 3.32087 3.50538 3.66425 3.68984 3.75762 3.97112 4.03517 4.07724 4.14150 4.20807 4.26904 4.28122 4.37772 4.45234 4.54882 4.58582 4.65708 4.69879 4.70816 4.72598 4.76663 4.80384 4.82730 4.83062 4.95077 5.03954 5.05433 5.15187 5.16373 5.17208 5.26035 5.31511 5.35669 5.63954 5.99366 6.05113 6.24139 6.31012 6.47059 6.62373 6.84449 6.94361 6.98903 7.38222 8.89434 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026548 B = 0.002258 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.432278 B =12397.620951 C =12739.812885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.024 3.976 13 C 0.132 3.868 14 H 0.095 0.905 15 O -0.559 6.559 16 C 0.041 3.959 17 N -0.679 5.679 18 C 0.076 3.924 19 C -0.052 4.052 20 C 0.099 3.901 21 O -0.585 6.585 22 C -0.134 4.134 23 C 0.055 3.945 24 O -0.400 6.400 25 C 0.057 3.943 26 C -0.143 4.143 27 H 0.010 0.990 28 H 0.055 0.945 29 H 0.077 0.923 30 H -0.040 1.040 31 H 0.004 0.996 32 H 0.265 0.735 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.379 0.621 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.346 0.654 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.391 0.609 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.050 0.950 48 H 0.106 0.894 49 H 0.049 0.951 50 H 0.078 0.922 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 -26.011 9.904 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.263 5.263 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.190 1.190 12 C -0.105 4.105 13 C 0.072 3.928 14 H 0.113 0.887 15 O -0.364 6.364 16 C -0.089 4.089 17 N -0.311 5.311 18 C -0.053 4.053 19 C -0.053 4.053 20 C 0.021 3.979 21 O -0.392 6.392 22 C -0.172 4.172 23 C -0.022 4.022 24 O -0.320 6.320 25 C -0.019 4.019 26 C -0.181 4.181 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.095 0.905 30 H -0.022 1.022 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.226 0.774 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.167 0.833 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.240 0.760 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.122 0.878 47 H 0.068 0.932 48 H 0.124 0.876 49 H 0.067 0.933 50 H 0.096 0.904 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.220 -26.212 9.731 28.048 hybrid contribution 0.440 1.712 0.163 1.775 sum -1.780 -24.500 9.894 26.482 Atomic orbital electron populations 1.22231 0.87858 1.01105 0.99612 1.61949 1.07958 1.14834 1.41548 1.19398 0.93624 0.83971 0.94919 1.21466 1.34788 0.97482 1.02381 0.92049 1.25923 0.95001 0.98047 1.00756 1.70082 1.39393 1.11889 1.36237 0.85377 0.77993 0.78082 0.79143 1.19764 1.20629 1.18973 1.22832 1.00156 0.95509 0.91988 1.21741 0.97695 0.88613 0.84738 0.88744 1.86569 1.24041 1.83623 1.42167 1.22447 0.98760 0.89463 0.98273 1.60298 1.64268 1.01274 1.05286 1.21921 0.96816 0.92829 0.93720 1.20598 0.94711 0.94170 0.95821 1.22006 0.91468 0.95483 0.88933 1.86377 1.25626 1.82346 1.44861 1.22091 0.96453 1.00629 0.98025 1.22737 0.92589 0.98524 0.88338 1.87909 1.76229 1.51692 1.16120 1.22695 0.95083 0.96776 0.87363 1.22179 0.96000 1.01947 0.97977 0.97162 0.92591 0.90495 1.02233 0.97811 0.92665 0.95158 0.91464 0.77354 0.90545 0.94378 0.83349 0.91628 0.95198 0.92863 0.93689 0.76050 0.90467 0.90951 0.87820 0.93162 0.87605 0.93272 0.90364 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.14 127.69 1.17 2.76 16 2 N -0.54 -23.55 4.70 -927.06 -4.36 -27.91 16 3 C 0.21 11.22 4.72 85.56 0.40 11.62 16 4 C -0.52 -30.17 8.46 25.60 0.22 -29.95 16 5 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 6 C 0.00 0.03 5.46 84.66 0.46 0.49 16 7 N -0.94 -56.77 13.29 21.45 0.28 -56.48 16 8 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 C 0.02 0.84 4.60 86.30 0.40 1.23 16 13 C 0.13 3.56 3.19 30.59 0.10 3.66 16 14 H 0.09 2.75 6.34 -2.39 -0.02 2.74 16 15 O -0.56 -15.48 12.62 -148.98 -1.88 -17.37 16 16 C 0.04 0.87 5.38 86.30 0.46 1.34 16 17 N -0.68 -12.86 5.53 -513.88 -2.84 -15.70 16 18 C 0.08 1.32 3.87 86.31 0.33 1.66 16 19 C -0.05 -0.79 0.43 -52.06 -0.02 -0.81 16 20 C 0.10 1.51 5.71 71.98 0.41 1.92 16 21 O -0.58 -9.66 12.47 -148.98 -1.86 -11.51 16 22 C -0.13 -1.94 4.75 30.68 0.15 -1.80 16 23 C 0.05 0.80 6.57 72.01 0.47 1.27 16 24 O -0.40 -7.14 10.77 -148.98 -1.60 -8.74 16 25 C 0.06 0.82 6.57 72.01 0.47 1.29 16 26 C -0.14 -1.91 4.74 30.68 0.15 -1.76 16 27 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 2.40 6.76 -2.39 -0.02 2.39 16 29 H 0.08 2.58 6.37 -2.39 -0.02 2.57 16 30 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 31 H 0.00 0.22 7.93 -2.39 -0.02 0.20 16 32 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 34 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 35 H 0.38 8.34 9.05 -74.05 -0.67 7.67 16 36 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.35 6.33 6.49 -89.69 -0.58 5.75 16 39 H 0.07 1.35 7.77 -2.39 -0.02 1.33 16 40 H 0.03 0.51 5.02 -2.39 -0.01 0.50 16 41 H 0.05 0.91 7.54 -2.39 -0.02 0.89 16 42 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.39 3.65 9.12 -74.06 -0.68 2.97 16 44 H 0.08 1.20 7.82 -2.39 -0.02 1.19 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.05 0.74 6.69 -2.39 -0.02 0.72 16 48 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.05 0.71 6.52 -2.39 -0.02 0.70 16 50 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.08 1.09 6.67 -2.39 -0.02 1.07 16 Total: -1.00 -69.23 388.63 -6.05 -75.28 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.99 Total: 22.76 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 5.17 Total: -7.09 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -6.91 Total: -100.09 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -5.34 Total: -37.62 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.23 -6.05 -75.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647239363.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.419 kcal (2) G-P(sol) polarization free energy of solvation -69.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds