Wall clock time and date at job start Fri Apr 10 2020 14:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47279 * 2 1 4 4 C 1.42901 * 114.00286 * 179.97438 * 3 2 1 5 5 C 1.53780 * 113.61418 * 209.99854 * 4 3 2 6 6 C 1.53783 * 87.07888 * 220.01668 * 5 4 3 7 7 O 1.42896 * 113.61519 * 270.79923 * 6 5 4 8 8 C 1.52999 * 113.61307 * 139.98258 * 6 5 4 9 9 N 1.46896 * 109.47399 * 186.53069 * 8 6 5 10 10 C 1.46894 * 111.00015 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46989 * 179.97438 * 10 9 8 12 12 H 1.08991 * 109.47469 * 304.99731 * 11 10 9 13 13 O 1.42899 * 109.46965 * 65.00290 * 11 10 9 14 14 C 1.53006 * 109.47006 * 185.00023 * 11 10 9 15 15 N 1.46902 * 109.46878 * 178.51161 * 14 11 10 16 16 C 1.46903 * 110.99775 * 164.01143 * 15 14 11 17 17 C 1.46897 * 110.99870 * 287.96111 * 15 14 11 18 18 C 1.50698 * 109.47187 * 170.00071 * 17 15 14 19 19 H 1.08002 * 119.99974 * 0.02562 * 18 17 15 20 20 C 1.37876 * 120.00563 * 179.97438 * 18 17 15 21 21 N 1.31512 * 120.00374 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99335 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47173 * 90.00040 * 22 20 18 24 24 H 1.48507 * 109.46902 * 209.99826 * 22 20 18 25 25 H 1.48500 * 109.47482 * 329.99552 * 22 20 18 26 26 C 1.53784 * 87.17371 * 25.39342 * 6 5 4 27 27 H 1.09001 * 109.46858 * 300.00405 * 1 2 3 28 28 H 1.08997 * 109.46803 * 59.99807 * 1 2 3 29 29 H 1.08994 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47656 * 240.00056 * 2 1 3 31 31 H 1.09005 * 109.47207 * 119.99706 * 2 1 3 32 32 H 1.09001 * 112.84460 * 341.19917 * 4 3 2 33 33 H 1.09003 * 113.60946 * 105.47247 * 5 4 3 34 34 H 1.08992 * 113.69422 * 334.58224 * 5 4 3 35 35 H 0.96705 * 114.00061 * 178.47314 * 7 6 5 36 36 H 1.09001 * 109.46903 * 66.52657 * 8 6 5 37 37 H 1.09005 * 109.46868 * 306.53338 * 8 6 5 38 38 H 1.00900 * 110.99612 * 303.95393 * 9 8 6 39 39 H 1.09000 * 109.47515 * 59.99933 * 10 9 8 40 40 H 1.08996 * 109.47472 * 299.99871 * 10 9 8 41 41 H 0.96696 * 114.00274 * 59.99701 * 13 11 10 42 42 H 1.09002 * 109.47115 * 298.50890 * 14 11 10 43 43 H 1.08996 * 109.47293 * 58.51285 * 14 11 10 44 44 H 1.08997 * 109.47125 * 65.47984 * 16 15 14 45 45 H 1.09000 * 109.46901 * 185.48257 * 16 15 14 46 46 H 1.09006 * 109.47036 * 305.47799 * 16 15 14 47 47 H 1.08994 * 109.47285 * 290.00430 * 17 15 14 48 48 H 1.09001 * 109.47312 * 50.00415 * 17 15 14 49 49 H 0.97002 * 119.99642 * 180.02562 * 21 20 18 50 50 H 1.08994 * 113.61250 * 89.15337 * 26 6 5 51 51 H 1.08996 * 113.61299 * 220.06196 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.9483 2.7254 0.7051 6 6 4.9900 2.8313 -0.4212 7 8 6.2022 2.1258 -0.1480 8 6 5.2316 4.2643 -0.8998 9 7 6.1169 4.2465 -2.0719 10 6 6.3720 5.6084 -2.5596 11 6 7.2962 5.5491 -3.7775 12 1 8.2034 5.0031 -3.5191 13 8 6.6281 4.8824 -4.8504 14 6 7.6623 6.9705 -4.2096 15 7 8.5780 6.9130 -5.3569 16 6 8.6550 8.2141 -6.0347 17 6 9.9112 6.4549 -4.9439 18 6 10.7466 6.1734 -6.1661 19 1 10.3290 6.3206 -7.1512 20 6 12.0443 5.7290 -6.0268 21 7 12.7735 5.4838 -7.0935 22 14 12.7667 5.4751 -4.3229 23 1 12.5051 4.0832 -3.8767 24 1 14.2318 5.7141 -4.3658 25 1 12.1377 6.4264 -3.3718 26 6 4.0050 2.0453 -1.3026 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9277 0.5457 0.3247 33 1 4.3836 2.5321 1.6856 34 1 3.2308 3.5458 0.7149 35 1 6.8523 2.1693 -0.8626 36 1 5.6981 4.8405 -0.1007 37 1 4.2800 4.7224 -1.1701 38 1 6.9813 3.7690 -1.8648 39 1 6.8467 6.1935 -1.7720 40 1 5.4287 6.0762 -2.8413 41 1 5.8104 5.3140 -5.1334 42 1 6.7576 7.5084 -4.4934 43 1 8.1482 7.4879 -3.3825 44 1 9.1087 8.9457 -5.3661 45 1 9.2618 8.1192 -6.9351 46 1 7.6516 8.5425 -6.3057 47 1 10.3920 7.2286 -4.3454 48 1 9.8153 5.5447 -4.3518 49 1 13.6864 5.1708 -6.9954 50 1 3.3021 2.6787 -1.8436 51 1 4.4859 1.3038 -1.9406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650167670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:28 Heat of formation + Delta-G solvation = -112.996628 kcal Electronic energy + Delta-G solvation = -27012.104432 eV Core-core repulsion = 23140.694553 eV Total energy + Delta-G solvation = -3871.409879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.37974 -38.33871 -37.62035 -35.91229 -34.68473 -34.50431 -32.43160 -31.26446 -30.14822 -28.11574 -27.31804 -26.13494 -24.94389 -23.29930 -23.06939 -22.07716 -21.64426 -20.06638 -19.95655 -17.58092 -16.97654 -16.83837 -16.44224 -16.07140 -15.69677 -15.65804 -15.21936 -14.96771 -14.65184 -14.30408 -14.20346 -13.75896 -13.55624 -13.38186 -13.20038 -13.07234 -12.90782 -12.61856 -12.47543 -12.36471 -12.26438 -12.04073 -11.73389 -11.57935 -11.52544 -11.34031 -11.17925 -11.09401 -10.81286 -10.68311 -10.51689 -10.21180 -10.10048 -9.89471 -9.70306 -9.54311 -9.20897 -8.60829 -8.55342 -7.35209 -6.03679 -4.00350 3.27338 3.33698 3.34669 3.34879 3.68234 3.72546 4.21730 4.40121 4.41862 4.51948 4.58927 4.65372 4.72372 4.75299 4.85326 4.94479 5.01637 5.11229 5.14635 5.26440 5.27817 5.34155 5.40829 5.44999 5.47099 5.48995 5.54004 5.56619 5.59120 5.71927 5.76723 5.84184 5.88952 5.93457 6.01721 6.22833 6.32049 6.63287 6.71944 6.83538 6.96004 6.96383 7.05482 7.34080 7.59530 7.87286 8.02763 8.15653 8.67384 9.05760 9.57834 11.09642 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.002272 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.617525 B =12323.167048 C =12896.095874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.377 6.377 4 C 0.066 3.934 5 C -0.121 4.121 6 C 0.112 3.888 7 O -0.546 6.546 8 C 0.045 3.955 9 N -0.676 5.676 10 C 0.029 3.971 11 C 0.117 3.883 12 H 0.097 0.903 13 O -0.529 6.529 14 C 0.022 3.978 15 N -0.520 5.520 16 C 0.039 3.961 17 C 0.162 3.838 18 C -0.506 4.506 19 H 0.081 0.919 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.874 3.126 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.270 1.270 26 C -0.162 4.162 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.383 0.617 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.338 0.662 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.363 0.637 42 H 0.065 0.935 43 H 0.029 0.971 44 H 0.010 0.990 45 H 0.080 0.920 46 H 0.046 0.954 47 H -0.015 1.015 48 H 0.024 0.976 49 H 0.263 0.737 50 H 0.097 0.903 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.065 -5.464 16.820 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.296 6.296 4 C 0.008 3.992 5 C -0.159 4.159 6 C 0.071 3.929 7 O -0.352 6.352 8 C -0.085 4.085 9 N -0.308 5.308 10 C -0.101 4.101 11 C 0.057 3.943 12 H 0.115 0.885 13 O -0.332 6.332 14 C -0.107 4.107 15 N -0.244 5.244 16 C -0.109 4.109 17 C 0.036 3.964 18 C -0.544 4.544 19 H 0.099 0.901 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.701 3.299 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.195 1.195 26 C -0.200 4.200 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.233 0.767 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.157 0.843 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.208 0.792 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.029 0.971 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.003 0.997 48 H 0.041 0.959 49 H 0.073 0.927 50 H 0.116 0.884 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.490 -6.363 16.595 28.665 hybrid contribution 1.538 1.105 1.640 2.506 sum -20.952 -5.258 18.235 28.269 Atomic orbital electron populations 1.21749 0.93827 1.02222 1.03100 1.22502 0.95530 0.84016 1.00046 1.87923 1.20779 1.26304 1.94616 1.23662 0.80717 0.97887 0.96896 1.23298 0.95921 0.98541 0.98154 1.21891 0.84583 0.90364 0.96109 1.86450 1.27166 1.75195 1.46436 1.22466 0.98720 0.95682 0.91641 1.60361 1.19663 1.17645 1.33168 1.22737 1.00381 0.89242 0.97748 1.21858 0.94405 0.93056 0.85023 0.88494 1.86694 1.40706 1.53279 1.52472 1.22745 0.97639 0.96376 0.93983 1.61856 1.11772 1.26617 1.24158 1.22235 0.99846 0.89060 0.99798 1.20219 0.85093 0.94162 0.96940 1.21019 0.96015 1.43963 0.93386 0.90102 1.24903 0.96942 0.95206 0.96359 1.69892 1.09329 1.46310 1.28399 0.86889 0.78507 0.78975 0.85525 1.20071 1.21193 1.19489 1.24053 0.98463 1.00389 0.97081 0.91938 0.91796 0.91173 0.93306 0.93491 0.89280 0.90182 0.87916 0.76743 0.94531 0.89706 0.84345 0.94554 0.90606 0.79193 0.91607 0.95319 0.97124 0.90179 0.93513 0.99720 0.95858 0.92696 0.88426 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.42 6.50 37.16 0.24 0.66 16 3 O -0.38 -3.70 10.36 -35.23 -0.36 -4.06 16 4 C 0.07 0.61 4.25 -25.83 -0.11 0.50 16 5 C -0.12 -1.05 7.31 -25.92 -0.19 -1.24 16 6 C 0.11 1.03 1.52 -89.80 -0.14 0.90 16 7 O -0.55 -5.50 13.39 -35.23 -0.47 -5.97 16 8 C 0.04 0.41 5.28 -3.83 -0.02 0.39 16 9 N -0.68 -7.09 6.42 -113.78 -0.73 -7.82 16 10 C 0.03 0.32 5.32 -3.83 -0.02 0.30 16 11 C 0.12 1.73 3.17 -26.73 -0.08 1.64 16 12 H 0.10 1.66 6.55 -51.93 -0.34 1.32 16 13 O -0.53 -8.54 13.18 -35.23 -0.46 -9.01 16 14 C 0.02 0.36 4.63 -3.82 -0.02 0.34 16 15 N -0.52 -10.76 4.60 -244.37 -1.12 -11.89 16 16 C 0.04 0.74 9.32 60.07 0.56 1.30 16 17 C 0.16 3.93 3.64 -4.98 -0.02 3.91 16 18 C -0.51 -14.52 9.09 -34.44 -0.31 -14.84 16 19 H 0.08 2.54 7.34 -52.49 -0.39 2.15 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 22 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 26 C -0.16 -1.53 7.32 -25.82 -0.19 -1.72 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.80 7.87 -51.93 -0.41 0.39 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.38 3.14 7.37 45.56 0.34 3.47 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.34 3.48 7.09 -39.29 -0.28 3.20 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.36 4.53 9.05 45.56 0.41 4.94 16 42 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 43 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 44 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 45 H 0.08 1.70 6.90 -51.93 -0.36 1.34 16 46 H 0.05 0.74 7.97 -51.93 -0.41 0.32 16 47 H -0.01 -0.36 7.17 -51.93 -0.37 -0.74 16 48 H 0.02 0.57 5.81 -51.93 -0.30 0.27 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.10 0.96 8.06 -51.93 -0.42 0.54 16 51 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 404.36 15.07 6.09 6.09 Total: -1.00 -33.27 404.36 -8.98 -42.25 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.01 Total: 7.10 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -0.01 Total: -6.55 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -1.08 Total: -46.73 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -1.30 Total: -19.04 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.27 -8.98 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650167670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.747 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds