Wall clock time and date at job start Fri Apr 10 2020 14:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47279 * 2 1 4 4 C 1.42901 * 114.00286 * 179.97438 * 3 2 1 5 5 C 1.53780 * 113.61418 * 209.99854 * 4 3 2 6 6 C 1.53783 * 87.07888 * 220.01668 * 5 4 3 7 7 O 1.42896 * 113.61519 * 270.79923 * 6 5 4 8 8 C 1.52999 * 113.61307 * 139.98258 * 6 5 4 9 9 N 1.46896 * 109.47399 * 186.53069 * 8 6 5 10 10 C 1.46894 * 111.00015 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46989 * 179.97438 * 10 9 8 12 12 H 1.08991 * 109.47469 * 304.99731 * 11 10 9 13 13 O 1.42899 * 109.46965 * 65.00290 * 11 10 9 14 14 C 1.53006 * 109.47006 * 185.00023 * 11 10 9 15 15 N 1.46902 * 109.46878 * 178.51161 * 14 11 10 16 16 C 1.46903 * 110.99775 * 164.01143 * 15 14 11 17 17 C 1.46897 * 110.99870 * 287.96111 * 15 14 11 18 18 C 1.50698 * 109.47187 * 170.00071 * 17 15 14 19 19 H 1.08002 * 119.99974 * 0.02562 * 18 17 15 20 20 C 1.37876 * 120.00563 * 179.97438 * 18 17 15 21 21 N 1.31512 * 120.00374 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99335 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47173 * 90.00040 * 22 20 18 24 24 H 1.48507 * 109.46902 * 209.99826 * 22 20 18 25 25 H 1.48500 * 109.47482 * 329.99552 * 22 20 18 26 26 C 1.53784 * 87.17371 * 25.39342 * 6 5 4 27 27 H 1.09001 * 109.46858 * 300.00405 * 1 2 3 28 28 H 1.08997 * 109.46803 * 59.99807 * 1 2 3 29 29 H 1.08994 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47656 * 240.00056 * 2 1 3 31 31 H 1.09005 * 109.47207 * 119.99706 * 2 1 3 32 32 H 1.09001 * 112.84460 * 341.19917 * 4 3 2 33 33 H 1.09003 * 113.60946 * 105.47247 * 5 4 3 34 34 H 1.08992 * 113.69422 * 334.58224 * 5 4 3 35 35 H 0.96705 * 114.00061 * 178.47314 * 7 6 5 36 36 H 1.09001 * 109.46903 * 66.52657 * 8 6 5 37 37 H 1.09005 * 109.46868 * 306.53338 * 8 6 5 38 38 H 1.00900 * 110.99612 * 303.95393 * 9 8 6 39 39 H 1.09000 * 109.47515 * 59.99933 * 10 9 8 40 40 H 1.08996 * 109.47472 * 299.99871 * 10 9 8 41 41 H 0.96696 * 114.00274 * 59.99701 * 13 11 10 42 42 H 1.09002 * 109.47115 * 298.50890 * 14 11 10 43 43 H 1.08996 * 109.47293 * 58.51285 * 14 11 10 44 44 H 1.08997 * 109.47125 * 65.47984 * 16 15 14 45 45 H 1.09000 * 109.46901 * 185.48257 * 16 15 14 46 46 H 1.09006 * 109.47036 * 305.47799 * 16 15 14 47 47 H 1.08994 * 109.47285 * 290.00430 * 17 15 14 48 48 H 1.09001 * 109.47312 * 50.00415 * 17 15 14 49 49 H 0.97002 * 119.99642 * 180.02562 * 21 20 18 50 50 H 1.08994 * 113.61250 * 89.15337 * 26 6 5 51 51 H 1.08996 * 113.61299 * 220.06196 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.9483 2.7254 0.7051 6 6 4.9900 2.8313 -0.4212 7 8 6.2022 2.1258 -0.1480 8 6 5.2316 4.2643 -0.8998 9 7 6.1169 4.2465 -2.0719 10 6 6.3720 5.6084 -2.5596 11 6 7.2962 5.5491 -3.7775 12 1 8.2034 5.0031 -3.5191 13 8 6.6281 4.8824 -4.8504 14 6 7.6623 6.9705 -4.2096 15 7 8.5780 6.9130 -5.3569 16 6 8.6550 8.2141 -6.0347 17 6 9.9112 6.4549 -4.9439 18 6 10.7466 6.1734 -6.1661 19 1 10.3290 6.3206 -7.1512 20 6 12.0443 5.7290 -6.0268 21 7 12.7735 5.4838 -7.0935 22 14 12.7667 5.4751 -4.3229 23 1 12.5051 4.0832 -3.8767 24 1 14.2318 5.7141 -4.3658 25 1 12.1377 6.4264 -3.3718 26 6 4.0050 2.0453 -1.3026 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9277 0.5457 0.3247 33 1 4.3836 2.5321 1.6856 34 1 3.2308 3.5458 0.7149 35 1 6.8523 2.1693 -0.8626 36 1 5.6981 4.8405 -0.1007 37 1 4.2800 4.7224 -1.1701 38 1 6.9813 3.7690 -1.8648 39 1 6.8467 6.1935 -1.7720 40 1 5.4287 6.0762 -2.8413 41 1 5.8104 5.3140 -5.1334 42 1 6.7576 7.5084 -4.4934 43 1 8.1482 7.4879 -3.3825 44 1 9.1087 8.9457 -5.3661 45 1 9.2618 8.1192 -6.9351 46 1 7.6516 8.5425 -6.3057 47 1 10.3920 7.2286 -4.3454 48 1 9.8153 5.5447 -4.3518 49 1 13.6864 5.1708 -6.9954 50 1 3.3021 2.6787 -1.8436 51 1 4.4859 1.3038 -1.9406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650167670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:27 Heat of formation + Delta-G solvation = -143.028598 kcal Electronic energy + Delta-G solvation = -27013.406716 eV Core-core repulsion = 23140.694553 eV Total energy + Delta-G solvation = -3872.712163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.09253 -39.53142 -38.39834 -37.27377 -35.65116 -35.23638 -34.58730 -31.87193 -31.29093 -29.98920 -28.36743 -26.86496 -26.18802 -24.72610 -23.75193 -22.86269 -22.81568 -21.56539 -20.77270 -19.05742 -18.36086 -17.64405 -17.32334 -16.93638 -16.76339 -16.65655 -16.31260 -16.10909 -15.97091 -15.66469 -15.36653 -14.88841 -14.68998 -14.44329 -14.35498 -14.13068 -13.92506 -13.80930 -13.46138 -13.24326 -13.11440 -13.05545 -12.87363 -12.83032 -12.60245 -12.39425 -12.38948 -12.26445 -12.14514 -11.87147 -11.84153 -11.65565 -11.45752 -11.38387 -10.87636 -10.77509 -10.59125 -10.36334 -9.39087 -8.94915 -8.28113 -6.31029 1.32483 1.34488 1.44315 2.33394 2.67904 2.87822 3.00440 3.04842 3.31443 3.53141 3.70863 3.74614 3.85129 3.92632 3.95929 4.12551 4.17011 4.18975 4.34976 4.35495 4.45039 4.48826 4.50842 4.55929 4.61875 4.67729 4.70828 4.75822 4.76066 4.78468 4.86051 4.90175 5.00226 5.01073 5.05957 5.13378 5.18049 5.19879 5.21688 5.29955 5.55298 5.90774 6.00123 6.25815 6.31733 6.38424 6.66891 6.67066 6.75339 7.14326 7.32017 8.88791 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.002272 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.617525 B =12323.167048 C =12896.095874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.392 6.392 4 C 0.066 3.934 5 C -0.118 4.118 6 C 0.114 3.886 7 O -0.557 6.557 8 C 0.051 3.949 9 N -0.684 5.684 10 C 0.042 3.958 11 C 0.121 3.879 12 H 0.069 0.931 13 O -0.554 6.554 14 C 0.023 3.977 15 N -0.541 5.541 16 C 0.042 3.958 17 C 0.174 3.826 18 C -0.515 4.515 19 H 0.035 0.965 20 C 0.004 3.996 21 N -0.949 5.949 22 Si 0.947 3.053 23 H -0.264 1.264 24 H -0.281 1.281 25 H -0.250 1.250 26 C -0.161 4.161 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.389 0.611 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.337 0.663 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.378 0.622 42 H 0.097 0.903 43 H 0.038 0.962 44 H 0.017 0.983 45 H 0.043 0.957 46 H 0.082 0.918 47 H -0.015 1.015 48 H 0.026 0.974 49 H 0.266 0.734 50 H 0.094 0.906 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.588 -5.059 19.461 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.312 6.312 4 C 0.008 3.992 5 C -0.155 4.155 6 C 0.072 3.928 7 O -0.365 6.365 8 C -0.078 4.078 9 N -0.317 5.317 10 C -0.088 4.088 11 C 0.061 3.939 12 H 0.087 0.913 13 O -0.359 6.359 14 C -0.106 4.106 15 N -0.265 5.265 16 C -0.106 4.106 17 C 0.047 3.953 18 C -0.553 4.553 19 H 0.053 0.947 20 C -0.193 4.193 21 N -0.590 5.590 22 Si 0.771 3.229 23 H -0.189 1.189 24 H -0.207 1.207 25 H -0.174 1.174 26 C -0.199 4.199 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.240 0.760 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.156 0.844 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.226 0.774 42 H 0.115 0.885 43 H 0.056 0.944 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.002 0.998 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.112 0.888 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.051 -5.945 19.238 31.367 hybrid contribution 1.923 0.965 0.697 2.262 sum -22.128 -4.979 19.935 30.197 Atomic orbital electron populations 1.21761 0.92806 1.03320 1.02752 1.22686 0.96436 0.83219 1.00498 1.87901 1.20971 1.27646 1.94688 1.23665 0.80648 0.98148 0.96763 1.23304 0.95780 0.98546 0.97915 1.21906 0.84327 0.90337 0.96214 1.86432 1.27626 1.75465 1.47016 1.22433 0.98704 0.95538 0.91131 1.60345 1.19902 1.17407 1.34010 1.22546 1.00265 0.89766 0.96174 1.21759 0.94284 0.91705 0.86177 0.91275 1.86650 1.41798 1.54196 1.53287 1.22871 0.97551 0.97667 0.92482 1.61724 1.10462 1.27700 1.26636 1.22192 1.01416 0.88664 0.98337 1.19933 0.86527 0.94304 0.94536 1.21287 0.96953 1.43716 0.93386 0.94682 1.25890 0.97404 0.94826 1.01161 1.70058 1.09917 1.47728 1.31279 0.85716 0.77623 0.79716 0.79888 1.18910 1.20699 1.17418 1.24012 0.98526 1.00234 0.97096 0.92035 0.92344 0.89391 0.93216 0.92683 0.89371 0.90110 0.87018 0.76017 0.94187 0.88942 0.84403 0.93638 0.88878 0.77432 0.88507 0.94424 0.96422 0.93796 0.89895 0.99777 0.95555 0.92483 0.88768 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.67 6.50 71.98 0.47 1.14 16 3 O -0.39 -7.29 10.36 -148.98 -1.54 -8.84 16 4 C 0.07 1.13 4.25 31.18 0.13 1.27 16 5 C -0.12 -1.84 7.31 31.12 0.23 -1.61 16 6 C 0.11 1.91 1.52 -10.27 -0.02 1.89 16 7 O -0.56 -10.51 13.39 -148.98 -2.00 -12.51 16 8 C 0.05 0.81 5.28 86.30 0.46 1.27 16 9 N -0.68 -12.84 6.42 -513.90 -3.30 -16.14 16 10 C 0.04 0.81 5.32 86.30 0.46 1.27 16 11 C 0.12 3.32 3.17 30.60 0.10 3.42 16 12 H 0.07 2.29 6.55 -2.39 -0.02 2.27 16 13 O -0.55 -17.08 13.18 -148.98 -1.96 -19.04 16 14 C 0.02 0.67 4.63 86.30 0.40 1.07 16 15 N -0.54 -21.86 4.60 -927.04 -4.27 -26.13 16 16 C 0.04 1.56 9.32 127.69 1.19 2.75 16 17 C 0.17 8.38 3.64 85.56 0.31 8.69 16 18 C -0.52 -30.46 9.09 25.60 0.23 -30.23 16 19 H 0.03 2.33 7.34 -2.91 -0.02 2.30 16 20 C 0.00 0.24 5.47 84.65 0.46 0.71 16 21 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 22 Si 0.95 44.41 27.47 68.60 1.88 46.29 16 23 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 26 C -0.16 -2.88 7.32 31.18 0.23 -2.65 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.09 1.51 7.87 -2.39 -0.02 1.49 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.11 1.53 8.10 -2.39 -0.02 1.52 16 35 H 0.39 5.98 7.37 -74.05 -0.55 5.43 16 36 H 0.04 0.62 8.14 -2.39 -0.02 0.61 16 37 H 0.09 1.34 8.09 -2.38 -0.02 1.32 16 38 H 0.34 6.40 7.09 -89.69 -0.64 5.76 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.38 8.64 9.05 -74.06 -0.67 7.97 16 42 H 0.10 2.21 7.88 -2.39 -0.02 2.20 16 43 H 0.04 1.05 8.05 -2.39 -0.02 1.03 16 44 H 0.02 0.61 8.13 -2.39 -0.02 0.59 16 45 H 0.04 1.91 6.90 -2.39 -0.02 1.90 16 46 H 0.08 2.43 7.97 -2.38 -0.02 2.41 16 47 H -0.02 -0.73 7.17 -2.39 -0.02 -0.75 16 48 H 0.03 1.26 5.81 -2.39 -0.01 1.24 16 49 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 50 H 0.09 1.75 8.06 -2.39 -0.02 1.73 16 51 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -73.38 404.36 -6.48 -79.87 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.99 Total: 28.50 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 5.39 Total: -11.93 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -7.26 Total: -102.35 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -5.50 Total: -40.38 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -73.38 -6.48 -79.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650167670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.163 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds