Wall clock time and date at job start Fri Apr 10 2020 14:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34900 * 116.99876 * 2 1 4 4 O 1.21617 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.46469 * 119.99874 * 180.02562 * 3 2 1 6 6 C 1.36641 * 125.99848 * 180.02562 * 5 3 2 7 7 C 1.40307 * 106.70653 * 179.97438 * 6 5 3 8 8 C 1.35178 * 107.12583 * 359.97438 * 7 6 5 9 9 S 1.76197 * 125.60801 * 180.02562 * 8 7 6 10 10 O 1.42099 * 106.39929 * 203.54058 * 9 8 7 11 11 O 1.42095 * 106.40262 * 336.45533 * 9 8 7 12 12 N 1.65593 * 107.22073 * 89.99724 * 9 8 7 13 13 C 1.46496 * 119.99970 * 270.00115 * 12 9 8 14 14 C 1.46510 * 119.99789 * 89.99905 * 12 9 8 15 15 H 1.09003 * 109.46978 * 359.97438 * 14 12 9 16 16 C 1.53003 * 109.46771 * 240.00039 * 14 12 9 17 17 C 1.50696 * 109.46984 * 119.99994 * 14 12 9 18 18 H 1.08005 * 120.00214 * 5.45961 * 17 14 12 19 19 C 1.37880 * 120.00065 * 185.45483 * 17 14 12 20 20 N 1.31515 * 119.99952 * 9.61674 * 19 17 14 21 21 Si 1.86799 * 119.99991 * 189.62163 * 19 17 14 22 22 H 1.48497 * 109.47334 * 84.99536 * 21 19 17 23 23 H 1.48507 * 109.46781 * 204.99136 * 21 19 17 24 24 H 1.48498 * 109.47126 * 324.98918 * 21 19 17 25 25 O 1.33912 * 108.77792 * 0.02562 * 8 7 6 26 26 H 1.08997 * 109.47362 * 299.99576 * 1 2 3 27 27 H 1.09007 * 109.47106 * 60.00026 * 1 2 3 28 28 H 1.09004 * 109.47321 * 179.97438 * 1 2 3 29 29 H 1.07995 * 126.64460 * 0.25477 * 6 5 3 30 30 H 1.08000 * 126.43884 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.47515 * 90.00366 * 13 12 9 32 32 H 1.09012 * 109.47034 * 209.99841 * 13 12 9 33 33 H 1.08998 * 109.47073 * 329.99236 * 13 12 9 34 34 H 1.09000 * 109.47233 * 63.29947 * 16 14 12 35 35 H 1.08998 * 109.46809 * 183.29839 * 16 14 12 36 36 H 1.09003 * 109.47028 * 303.29459 * 16 14 12 37 37 H 0.96996 * 120.00296 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5270 1.2786 -0.0006 6 6 4.2712 2.4246 -0.0001 7 6 5.6179 2.0310 -0.0004 8 6 5.6376 0.6794 -0.0003 9 16 7.0849 -0.3255 0.0001 10 8 6.7018 -1.5809 -0.5445 11 8 8.1274 0.4721 -0.5442 12 7 7.4872 -0.6051 1.5819 13 6 8.3887 0.3134 2.2817 14 6 6.9415 -1.7709 2.2815 15 1 6.2965 -2.3316 1.6049 16 6 6.1287 -1.3053 3.4913 17 6 8.0719 -2.6531 2.7451 18 1 9.0950 -2.3314 2.6178 19 6 7.8000 -3.8708 3.3318 20 7 6.5748 -4.3486 3.3177 21 14 9.1719 -4.8419 4.1468 22 1 9.3507 -4.3696 5.5432 23 1 8.8204 -6.2848 4.1536 24 1 10.4350 -4.6437 3.3915 25 8 4.3762 0.2299 -0.0007 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.8955 3.4371 0.0045 30 1 6.4774 2.6850 0.0003 31 1 7.8060 1.1011 2.7594 32 1 8.9490 -0.2344 3.0396 33 1 9.0821 0.7568 1.5671 34 1 5.2772 -0.7155 3.1518 35 1 5.7716 -2.1736 4.0450 36 1 6.7583 -0.6951 4.1389 37 1 6.3836 -5.2055 3.7301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107700636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:45 Heat of formation + Delta-G solvation = -126.420046 kcal Electronic energy + Delta-G solvation = -25144.303488 eV Core-core repulsion = 21209.846451 eV Total energy + Delta-G solvation = -3934.457037 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.89911 -40.44846 -36.98094 -36.83239 -36.33206 -35.50554 -33.41642 -32.63977 -30.85225 -29.31062 -27.98812 -25.69935 -25.22456 -24.35579 -22.33292 -21.13125 -20.80835 -19.27580 -18.44479 -17.65322 -17.29844 -17.09677 -16.84715 -16.35939 -15.90258 -15.40935 -14.65388 -14.49317 -13.97370 -13.64258 -13.54120 -13.48347 -13.31075 -13.25533 -12.79534 -12.45549 -12.20442 -11.97655 -11.81325 -11.59347 -11.39885 -11.29364 -11.14025 -11.11573 -11.02112 -10.86656 -10.57928 -10.39070 -10.36791 -10.10102 -9.41626 -9.35331 -8.46862 -8.17970 -6.13711 -4.17950 0.27794 0.59478 1.69393 2.03387 2.56143 2.85006 3.26944 3.34113 3.35797 3.43727 3.98953 4.36282 4.44874 4.52246 4.81696 4.84583 4.94238 5.10629 5.17948 5.19063 5.28947 5.41466 5.54918 5.88048 5.89007 5.96988 6.19233 6.39172 6.53670 6.65049 6.66102 6.89599 7.22650 7.29045 7.52774 7.66411 7.88358 8.16702 8.83024 9.46142 10.94214 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.004480 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.709814 B = 6248.272521 C = 7324.012342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.340 6.340 3 C 0.555 3.445 4 O -0.484 6.484 5 C -0.031 4.031 6 C -0.125 4.125 7 C -0.118 4.118 8 C -0.519 4.519 9 S 2.693 3.307 10 O -0.924 6.924 11 O -0.947 6.947 12 N -0.964 5.964 13 C 0.088 3.912 14 C 0.261 3.739 15 H 0.072 0.928 16 C -0.143 4.143 17 C -0.526 4.526 18 H 0.067 0.933 19 C 0.068 3.932 20 N -0.883 5.883 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 O -0.085 6.085 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.014 0.986 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.839 11.886 -3.888 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.255 6.255 3 C 0.399 3.601 4 O -0.373 6.373 5 C -0.086 4.086 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.648 4.648 9 S 2.772 3.228 10 O -0.914 6.914 11 O -0.937 6.937 12 N -0.806 5.806 13 C -0.058 4.058 14 C 0.159 3.841 15 H 0.089 0.911 16 C -0.203 4.203 17 C -0.565 4.565 18 H 0.085 0.915 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 O 0.023 5.977 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.191 0.809 30 H 0.195 0.805 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.968 11.442 -4.582 14.159 hybrid contribution -0.140 0.191 0.872 0.904 sum -7.108 11.633 -3.710 14.128 Atomic orbital electron populations 1.23426 0.74942 1.04575 1.02807 1.86737 1.24292 1.31107 1.83382 1.19136 0.85317 0.82404 0.73236 1.90943 1.64324 1.35901 1.46102 1.21349 0.88810 0.87365 1.11041 1.22113 0.92088 0.99055 1.01271 1.21911 0.98568 0.93455 0.99966 1.37429 1.01790 1.10302 1.15231 1.02816 0.72392 0.73260 0.74302 1.93629 1.82865 1.38298 1.76568 1.93579 1.50358 1.72235 1.77534 1.57508 1.56961 1.35319 1.30813 1.21493 0.93153 0.92521 0.98626 1.18962 0.94351 0.79874 0.90919 0.91056 1.22068 0.97453 1.00701 1.00093 1.21226 0.92791 1.02377 1.40149 0.91523 1.24925 0.95839 0.96811 0.96050 1.69953 1.19353 1.19487 1.43255 0.86524 0.82165 0.78985 0.79837 1.20491 1.21181 1.19773 1.84357 1.13306 1.32703 1.67291 0.91367 0.91470 0.87265 0.80926 0.80521 0.93977 0.88939 0.91261 0.96690 0.90319 0.94338 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.34 -4.67 10.58 -42.48 -0.45 -5.12 16 3 C 0.56 8.05 7.93 34.05 0.27 8.32 16 4 O -0.48 -7.14 16.66 -19.35 -0.32 -7.46 16 5 C -0.03 -0.48 7.18 -36.85 -0.26 -0.75 16 6 C -0.13 -1.62 10.62 -39.38 -0.42 -2.04 16 7 C -0.12 -1.60 10.58 -39.89 -0.42 -2.03 16 8 C -0.52 -8.72 7.35 29.64 0.22 -8.51 16 9 S 2.69 51.15 5.84 -107.50 -0.63 50.52 16 10 O -0.92 -21.14 16.58 -57.26 -0.95 -22.09 16 11 O -0.95 -17.60 16.43 -57.18 -0.94 -18.54 16 12 N -0.96 -18.95 3.06 -115.84 -0.35 -19.31 16 13 C 0.09 1.40 9.58 59.84 0.57 1.97 16 14 C 0.26 6.18 2.49 -69.08 -0.17 6.01 16 15 H 0.07 1.90 6.86 -51.93 -0.36 1.55 16 16 C -0.14 -3.14 9.12 37.16 0.34 -2.80 16 17 C -0.53 -13.52 8.01 -34.44 -0.28 -13.79 16 18 H 0.07 1.66 7.16 -52.48 -0.38 1.29 16 19 C 0.07 1.78 5.17 -17.82 -0.09 1.69 16 20 N -0.88 -24.32 12.17 55.43 0.67 -23.65 16 21 Si 0.90 20.36 29.55 -169.99 -5.02 15.33 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 O -0.09 -1.52 10.67 4.68 0.05 -1.47 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.18 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.52 6.92 -51.92 -0.36 1.16 16 33 H 0.07 0.98 7.02 -51.93 -0.36 0.62 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 1.89 6.84 -51.93 -0.36 1.54 16 36 H 0.04 0.76 7.56 -51.93 -0.39 0.37 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -32.18 338.94 -6.31 -38.49 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.30 Total: -1.29 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 0.82 Total: -10.53 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.32 Total: -42.95 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -2.61 Total: -54.69 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 51.15 SS G_CDS: -0.63 Total: 50.52 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.18 -6.31 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107700636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.929 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds