Wall clock time and date at job start Fri Apr 10 2020 14:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34900 * 116.99876 * 2 1 4 4 O 1.21617 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.46469 * 119.99874 * 180.02562 * 3 2 1 6 6 C 1.36641 * 125.99848 * 180.02562 * 5 3 2 7 7 C 1.40307 * 106.70653 * 179.97438 * 6 5 3 8 8 C 1.35178 * 107.12583 * 359.97438 * 7 6 5 9 9 S 1.76197 * 125.60801 * 180.02562 * 8 7 6 10 10 O 1.42099 * 106.39929 * 203.54058 * 9 8 7 11 11 O 1.42095 * 106.40262 * 336.45533 * 9 8 7 12 12 N 1.65593 * 107.22073 * 89.99724 * 9 8 7 13 13 C 1.46496 * 119.99970 * 270.00115 * 12 9 8 14 14 C 1.46510 * 119.99789 * 89.99905 * 12 9 8 15 15 H 1.09003 * 109.46978 * 359.97438 * 14 12 9 16 16 C 1.53003 * 109.46771 * 240.00039 * 14 12 9 17 17 C 1.50696 * 109.46984 * 119.99994 * 14 12 9 18 18 H 1.08005 * 120.00214 * 5.45961 * 17 14 12 19 19 C 1.37880 * 120.00065 * 185.45483 * 17 14 12 20 20 N 1.31515 * 119.99952 * 9.61674 * 19 17 14 21 21 Si 1.86799 * 119.99991 * 189.62163 * 19 17 14 22 22 H 1.48497 * 109.47334 * 84.99536 * 21 19 17 23 23 H 1.48507 * 109.46781 * 204.99136 * 21 19 17 24 24 H 1.48498 * 109.47126 * 324.98918 * 21 19 17 25 25 O 1.33912 * 108.77792 * 0.02562 * 8 7 6 26 26 H 1.08997 * 109.47362 * 299.99576 * 1 2 3 27 27 H 1.09007 * 109.47106 * 60.00026 * 1 2 3 28 28 H 1.09004 * 109.47321 * 179.97438 * 1 2 3 29 29 H 1.07995 * 126.64460 * 0.25477 * 6 5 3 30 30 H 1.08000 * 126.43884 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.47515 * 90.00366 * 13 12 9 32 32 H 1.09012 * 109.47034 * 209.99841 * 13 12 9 33 33 H 1.08998 * 109.47073 * 329.99236 * 13 12 9 34 34 H 1.09000 * 109.47233 * 63.29947 * 16 14 12 35 35 H 1.08998 * 109.46809 * 183.29839 * 16 14 12 36 36 H 1.09003 * 109.47028 * 303.29459 * 16 14 12 37 37 H 0.96996 * 120.00296 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5270 1.2786 -0.0006 6 6 4.2712 2.4246 -0.0001 7 6 5.6179 2.0310 -0.0004 8 6 5.6376 0.6794 -0.0003 9 16 7.0849 -0.3255 0.0001 10 8 6.7018 -1.5809 -0.5445 11 8 8.1274 0.4721 -0.5442 12 7 7.4872 -0.6051 1.5819 13 6 8.3887 0.3134 2.2817 14 6 6.9415 -1.7709 2.2815 15 1 6.2965 -2.3316 1.6049 16 6 6.1287 -1.3053 3.4913 17 6 8.0719 -2.6531 2.7451 18 1 9.0950 -2.3314 2.6178 19 6 7.8000 -3.8708 3.3318 20 7 6.5748 -4.3486 3.3177 21 14 9.1719 -4.8419 4.1468 22 1 9.3507 -4.3696 5.5432 23 1 8.8204 -6.2848 4.1536 24 1 10.4350 -4.6437 3.3915 25 8 4.3762 0.2299 -0.0007 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.8955 3.4371 0.0045 30 1 6.4774 2.6850 0.0003 31 1 7.8060 1.1011 2.7594 32 1 8.9490 -0.2344 3.0396 33 1 9.0821 0.7568 1.5671 34 1 5.2772 -0.7155 3.1518 35 1 5.7716 -2.1736 4.0450 36 1 6.7583 -0.6951 4.1389 37 1 6.3836 -5.2055 3.7301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107700636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:44 Heat of formation + Delta-G solvation = -149.303075 kcal Electronic energy + Delta-G solvation = -25145.295770 eV Core-core repulsion = 21209.846451 eV Total energy + Delta-G solvation = -3935.449320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.07606 -41.50240 -38.53580 -37.97551 -37.88223 -37.09939 -34.56708 -34.51796 -31.97787 -31.05852 -28.83657 -27.21678 -27.06673 -25.46829 -23.46323 -22.72346 -22.07916 -20.54198 -19.74051 -19.00888 -18.73618 -18.30488 -18.18349 -17.94619 -17.15754 -16.99977 -16.38652 -15.57737 -15.30797 -15.11420 -14.79086 -14.50478 -14.47816 -14.42452 -14.33695 -13.86050 -13.53109 -13.40321 -13.31306 -13.23741 -12.93876 -12.77774 -12.72256 -12.61418 -12.30138 -12.23216 -12.18225 -12.02010 -11.89637 -11.48672 -11.23095 -10.55823 -10.45831 -9.77122 -8.12494 -6.23129 -1.00549 -0.75731 0.58939 0.99863 1.47232 1.47762 1.48759 1.57870 1.72616 2.00939 2.46230 2.55044 3.18445 3.26821 3.48608 3.55438 3.97619 4.07643 4.11032 4.17845 4.26683 4.45263 4.63570 4.73805 4.79550 4.87469 4.90572 4.92613 4.98143 5.09619 5.26139 5.27664 5.56168 5.62585 5.83126 6.01807 6.24073 6.24527 6.84751 7.44708 8.95227 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.004480 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.709814 B = 6248.272521 C = 7324.012342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.556 3.444 4 O -0.488 6.488 5 C -0.048 4.048 6 C -0.109 4.109 7 C -0.090 4.090 8 C -0.552 4.552 9 S 2.715 3.285 10 O -0.977 6.977 11 O -0.945 6.945 12 N -0.974 5.974 13 C 0.079 3.921 14 C 0.266 3.734 15 H 0.030 0.970 16 C -0.131 4.131 17 C -0.537 4.537 18 H 0.070 0.930 19 C 0.018 3.982 20 N -0.918 5.918 21 Si 0.958 3.042 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.269 1.269 25 O -0.118 6.118 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.210 0.790 30 H 0.215 0.785 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.027 0.973 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 14.351 -3.452 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.400 3.600 4 O -0.378 6.378 5 C -0.102 4.102 6 C -0.129 4.129 7 C -0.111 4.111 8 C -0.683 4.683 9 S 2.799 3.201 10 O -0.967 6.967 11 O -0.935 6.935 12 N -0.815 5.815 13 C -0.066 4.066 14 C 0.162 3.838 15 H 0.048 0.952 16 C -0.191 4.191 17 C -0.577 4.577 18 H 0.088 0.912 19 C -0.182 4.182 20 N -0.556 5.556 21 Si 0.784 3.216 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.193 1.193 25 O -0.011 6.011 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.227 0.773 30 H 0.232 0.768 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.530 13.902 -4.135 15.906 hybrid contribution -0.376 -0.456 0.657 0.883 sum -6.906 13.446 -3.479 15.511 Atomic orbital electron populations 1.23797 0.72563 1.06478 1.03756 1.86725 1.26791 1.30986 1.83055 1.19103 0.85183 0.82583 0.73140 1.90928 1.64351 1.35960 1.46608 1.21873 0.89293 0.87754 1.11269 1.22592 0.91332 0.99864 0.99075 1.22446 1.00094 0.92169 0.96359 1.36733 1.01088 1.11316 1.19154 1.01650 0.72464 0.72446 0.73555 1.93564 1.83875 1.41615 1.77638 1.93569 1.50748 1.71831 1.77327 1.57321 1.58096 1.35284 1.30822 1.21772 0.93388 0.92467 0.98934 1.18579 0.93505 0.80951 0.90768 0.95188 1.21880 0.97956 0.99948 0.99308 1.21597 0.93547 1.02827 1.39730 0.91197 1.25709 0.97847 0.97990 0.96697 1.70083 1.21259 1.19900 1.44379 0.85570 0.79485 0.77281 0.79307 1.19289 1.21539 1.19321 1.84317 1.13915 1.34211 1.68684 0.90592 0.90341 0.85030 0.77328 0.76837 0.90842 0.89713 0.89430 0.95357 0.93008 0.92349 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.36 -9.81 10.58 -56.77 -0.60 -10.41 16 3 C 0.56 15.60 7.93 69.97 0.55 16.16 16 4 O -0.49 -13.59 16.66 19.45 0.32 -13.26 16 5 C -0.05 -1.42 7.18 24.04 0.17 -1.24 16 6 C -0.11 -2.47 10.62 22.40 0.24 -2.23 16 7 C -0.09 -2.14 10.58 22.07 0.23 -1.91 16 8 C -0.55 -18.00 7.35 67.11 0.49 -17.50 16 9 S 2.71 103.17 5.84 -56.49 -0.33 102.84 16 10 O -0.98 -46.83 16.58 -127.91 -2.12 -48.95 16 11 O -0.94 -33.78 16.43 -128.00 -2.10 -35.88 16 12 N -0.97 -37.93 3.06 -520.42 -1.59 -39.52 16 13 C 0.08 2.34 9.58 127.77 1.22 3.56 16 14 C 0.27 12.84 2.49 44.24 0.11 12.95 16 15 H 0.03 1.70 6.86 -2.39 -0.02 1.68 16 16 C -0.13 -5.76 9.12 71.98 0.66 -5.11 16 17 C -0.54 -27.99 8.01 25.60 0.20 -27.79 16 18 H 0.07 3.49 7.16 -2.91 -0.02 3.47 16 19 C 0.02 0.96 5.17 84.66 0.44 1.39 16 20 N -0.92 -52.09 12.17 21.45 0.26 -51.83 16 21 Si 0.96 42.02 29.55 68.60 2.03 44.04 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 O -0.12 -4.23 10.67 -4.84 -0.05 -4.28 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.13 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.21 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.21 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.65 6.92 -2.38 -0.02 2.64 16 33 H 0.09 2.26 7.02 -2.39 -0.02 2.24 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 2.54 6.84 -2.39 -0.02 2.52 16 36 H 0.06 2.26 7.56 -2.39 -0.02 2.25 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -71.70 338.94 2.44 -69.26 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.10 Total: 8.06 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.52 Total: -20.07 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -1.33 Total: -91.35 kcal Atomic # 8 Polarization: -108.23 SS G_CDS: -4.55 Total: -112.78 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 103.17 SS G_CDS: -0.33 Total: 102.84 kcal Total: -71.70 2.44 -69.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107700636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.042 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds