Wall clock time and date at job start Fri Apr 10 2020 14:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34774 * 117.00060 * 2 1 4 4 O 1.21530 * 119.99844 * 359.97438 * 3 2 1 5 5 C 1.47233 * 120.00278 * 179.72383 * 3 2 1 6 6 C 1.36505 * 127.19703 * 359.68513 * 5 3 2 7 7 O 1.33627 * 108.38053 * 179.87356 * 6 5 3 8 8 C 1.34224 * 110.92334 * 0.40796 * 7 6 5 9 9 S 1.76206 * 125.42405 * 179.77261 * 8 7 6 10 10 O 1.42099 * 106.40388 * 23.51455 * 9 8 7 11 11 O 1.42101 * 106.40017 * 156.43573 * 9 8 7 12 12 N 1.65597 * 107.21571 * 269.97368 * 9 8 7 13 13 C 1.46503 * 120.00343 * 270.00247 * 12 9 8 14 14 C 1.46502 * 120.00044 * 90.00301 * 12 9 8 15 15 H 1.09002 * 109.47039 * 0.02562 * 14 12 9 16 16 C 1.53005 * 109.47195 * 239.99970 * 14 12 9 17 17 C 1.50696 * 109.47411 * 120.00003 * 14 12 9 18 18 H 1.08000 * 119.99669 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00336 * 180.02562 * 17 14 12 20 20 N 1.31511 * 119.99703 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00040 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47290 * 59.99251 * 21 19 17 23 23 H 1.48503 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47093 * 299.99543 * 21 19 17 25 25 C 1.34157 * 109.14609 * 359.74947 * 8 7 6 26 26 H 1.09002 * 109.46640 * 60.00119 * 1 2 3 27 27 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46967 * 299.99916 * 1 2 3 29 29 H 1.07997 * 125.80852 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.47300 * 89.99698 * 13 12 9 31 31 H 1.08999 * 109.47327 * 210.00182 * 13 12 9 32 32 H 1.09000 * 109.46785 * 330.00554 * 13 12 9 33 33 H 1.09003 * 109.46976 * 179.97438 * 16 14 12 34 34 H 1.08996 * 109.46885 * 300.00264 * 16 14 12 35 35 H 1.09000 * 109.46672 * 59.99607 * 16 14 12 36 36 H 0.97001 * 120.00098 * 180.02562 * 20 19 17 37 37 H 1.07997 * 127.02582 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5342 1.2780 0.0061 6 6 4.4152 0.2354 0.0182 7 8 5.6558 0.7320 0.0173 8 6 5.6348 2.0741 0.0139 9 16 7.0546 3.1177 0.0174 10 8 8.1205 2.3469 -0.5201 11 8 6.6401 4.3608 -0.5324 12 7 7.4424 3.4124 1.6001 13 6 6.8625 4.5650 2.2940 14 6 8.3654 2.5205 2.3064 15 1 8.6906 1.7272 1.6333 16 6 7.6563 1.9060 3.5150 17 6 9.5642 3.3055 2.7730 18 1 9.6319 4.3629 2.5639 19 6 10.5749 2.6736 3.4659 20 7 10.4926 1.3859 3.7200 21 14 12.0605 3.6468 4.0449 22 1 11.6176 4.7273 4.9622 23 1 12.9962 2.7427 4.7608 24 1 12.7485 4.2442 2.8723 25 6 4.3607 2.4942 0.0070 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.1540 -0.8125 0.0254 30 1 5.9264 4.2703 2.7684 31 1 7.5589 4.9197 3.0538 32 1 6.6706 5.3624 1.5762 33 1 8.3429 1.2421 4.0402 34 1 7.3314 2.6996 4.1878 35 1 6.7892 1.3383 3.1774 36 1 11.2035 0.9414 4.2078 37 1 4.0132 3.5167 0.0025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152713330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:50 Heat of formation + Delta-G solvation = -129.907728 kcal Electronic energy + Delta-G solvation = -24911.582956 eV Core-core repulsion = 20976.974682 eV Total energy + Delta-G solvation = -3934.608274 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.77642 -40.37737 -36.95023 -36.66669 -36.30690 -35.48448 -33.28736 -32.66329 -30.65089 -29.19071 -28.03925 -25.64283 -25.23968 -24.25623 -22.42693 -21.17090 -20.74489 -19.41252 -18.00211 -17.40299 -17.18919 -16.71404 -16.50177 -16.36116 -16.09564 -15.84030 -15.36517 -14.63374 -13.99082 -13.61354 -13.56183 -13.45978 -13.30906 -13.14209 -12.78164 -12.35949 -12.17283 -11.95766 -11.77665 -11.47085 -11.32029 -11.28872 -11.13140 -10.97089 -10.92240 -10.87175 -10.55702 -10.28371 -10.24686 -10.11204 -9.43278 -9.35654 -8.49775 -8.13473 -6.11812 -4.19270 0.56604 0.86153 1.27358 2.24366 2.74980 2.81080 3.28664 3.33384 3.35777 3.46899 4.02019 4.25234 4.36342 4.45404 4.75589 4.78260 4.86561 4.88199 5.17835 5.20331 5.21988 5.46699 5.58290 5.78883 6.00990 6.02046 6.23024 6.49450 6.58835 6.72110 6.76020 6.95733 7.30132 7.45820 7.55000 7.72101 7.97588 8.19352 8.82062 9.46464 10.93942 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.003634 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.698760 B = 7703.890375 C = 8058.946359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.542 3.458 4 O -0.503 6.503 5 C -0.254 4.254 6 C 0.093 3.907 7 O -0.108 6.108 8 C -0.556 4.556 9 S 2.698 3.302 10 O -0.929 6.929 11 O -0.949 6.949 12 N -0.966 5.966 13 C 0.089 3.911 14 C 0.264 3.736 15 H 0.065 0.935 16 C -0.149 4.149 17 C -0.523 4.523 18 H 0.065 0.935 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.045 4.045 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.230 0.770 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.009 0.991 36 H 0.265 0.735 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.930 -3.446 -4.664 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.387 3.613 4 O -0.391 6.391 5 C -0.257 4.257 6 C 0.018 3.982 7 O 0.001 5.999 8 C -0.681 4.681 9 S 2.778 3.222 10 O -0.919 6.919 11 O -0.939 6.939 12 N -0.808 5.808 13 C -0.057 4.057 14 C 0.162 3.838 15 H 0.083 0.917 16 C -0.209 4.209 17 C -0.563 4.563 18 H 0.083 0.917 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.066 4.066 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.246 0.754 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.426 -3.208 -5.315 16.628 hybrid contribution -0.422 0.113 0.739 0.858 sum -15.847 -3.094 -4.575 16.782 Atomic orbital electron populations 1.23302 0.75512 1.03879 1.02822 1.86528 1.23933 1.32374 1.84685 1.19872 0.87221 0.81579 0.72609 1.90863 1.66390 1.35913 1.45977 1.20633 0.90770 0.94372 1.19973 1.25281 0.81496 0.99974 0.91491 1.84046 1.28899 1.18858 1.68057 1.36790 1.20192 0.90994 1.20092 1.02542 0.72461 0.73068 0.74110 1.93608 1.49689 1.71652 1.76914 1.93583 1.83683 1.39303 1.77374 1.57488 1.56130 1.36477 1.30729 1.21474 0.98247 0.87298 0.98692 1.18918 0.85612 0.88515 0.90756 0.91747 1.22137 0.98400 1.00348 0.99979 1.21248 1.02955 0.95939 1.36130 0.91655 1.24902 0.98209 0.95012 0.95624 1.69846 1.33623 1.08802 1.40367 0.86516 0.82109 0.79655 0.78892 1.20194 1.21196 1.20045 1.22818 0.89729 0.99674 0.94360 0.91699 0.87788 0.91657 0.75399 0.94019 0.88950 0.91328 0.88647 0.94606 0.97165 0.92507 0.80426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.73 10.42 -40.69 -0.42 -4.15 16 3 C 0.54 7.13 7.95 34.38 0.27 7.41 16 4 O -0.50 -7.80 16.77 -19.29 -0.32 -8.12 16 5 C -0.25 -3.44 6.31 -103.29 -0.65 -4.09 16 6 C 0.09 1.10 11.94 30.11 0.36 1.46 16 7 O -0.11 -1.67 10.52 7.69 0.08 -1.59 16 8 C -0.56 -9.19 7.32 29.29 0.21 -8.97 16 9 S 2.70 51.39 5.84 -107.50 -0.63 50.76 16 10 O -0.93 -20.83 16.58 -57.28 -0.95 -21.78 16 11 O -0.95 -18.20 16.42 -57.17 -0.94 -19.14 16 12 N -0.97 -19.25 3.06 -115.85 -0.35 -19.60 16 13 C 0.09 1.48 9.65 59.85 0.58 2.06 16 14 C 0.26 6.25 2.62 -69.08 -0.18 6.07 16 15 H 0.06 1.68 6.91 -51.93 -0.36 1.32 16 16 C -0.15 -3.30 8.97 37.16 0.33 -2.97 16 17 C -0.52 -13.50 7.99 -34.44 -0.28 -13.78 16 18 H 0.07 1.65 7.33 -52.49 -0.38 1.26 16 19 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.02 11.32 55.43 0.63 -23.40 16 21 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 C -0.05 -0.68 10.70 -37.45 -0.40 -1.08 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.23 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.59 7.02 -51.93 -0.36 1.23 16 32 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 33 H 0.10 2.34 6.07 -51.93 -0.32 2.02 16 34 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.18 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 338.27 15.07 5.10 5.10 Total: -1.00 -32.73 338.27 -5.89 -38.62 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.28 Total: -1.22 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 1.22 Total: -10.94 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.27 Total: -43.00 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.56 Total: -54.78 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.63 Total: 50.76 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.73 -5.89 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152713330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.288 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds