Wall clock time and date at job start Fri Apr 10 2020 14:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34774 * 117.00060 * 2 1 4 4 O 1.21530 * 119.99844 * 359.97438 * 3 2 1 5 5 C 1.47233 * 120.00278 * 179.72383 * 3 2 1 6 6 C 1.36505 * 127.19703 * 359.68513 * 5 3 2 7 7 O 1.33627 * 108.38053 * 179.87356 * 6 5 3 8 8 C 1.34224 * 110.92334 * 0.40796 * 7 6 5 9 9 S 1.76206 * 125.42405 * 179.77261 * 8 7 6 10 10 O 1.42099 * 106.40388 * 23.51455 * 9 8 7 11 11 O 1.42101 * 106.40017 * 156.43573 * 9 8 7 12 12 N 1.65597 * 107.21571 * 269.97368 * 9 8 7 13 13 C 1.46503 * 120.00343 * 270.00247 * 12 9 8 14 14 C 1.46502 * 120.00044 * 90.00301 * 12 9 8 15 15 H 1.09002 * 109.47039 * 0.02562 * 14 12 9 16 16 C 1.53005 * 109.47195 * 239.99970 * 14 12 9 17 17 C 1.50696 * 109.47411 * 120.00003 * 14 12 9 18 18 H 1.08000 * 119.99669 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00336 * 180.02562 * 17 14 12 20 20 N 1.31511 * 119.99703 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00040 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47290 * 59.99251 * 21 19 17 23 23 H 1.48503 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47093 * 299.99543 * 21 19 17 25 25 C 1.34157 * 109.14609 * 359.74947 * 8 7 6 26 26 H 1.09002 * 109.46640 * 60.00119 * 1 2 3 27 27 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46967 * 299.99916 * 1 2 3 29 29 H 1.07997 * 125.80852 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.47300 * 89.99698 * 13 12 9 31 31 H 1.08999 * 109.47327 * 210.00182 * 13 12 9 32 32 H 1.09000 * 109.46785 * 330.00554 * 13 12 9 33 33 H 1.09003 * 109.46976 * 179.97438 * 16 14 12 34 34 H 1.08996 * 109.46885 * 300.00264 * 16 14 12 35 35 H 1.09000 * 109.46672 * 59.99607 * 16 14 12 36 36 H 0.97001 * 120.00098 * 180.02562 * 20 19 17 37 37 H 1.07997 * 127.02582 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5342 1.2780 0.0061 6 6 4.4152 0.2354 0.0182 7 8 5.6558 0.7320 0.0173 8 6 5.6348 2.0741 0.0139 9 16 7.0546 3.1177 0.0174 10 8 8.1205 2.3469 -0.5201 11 8 6.6401 4.3608 -0.5324 12 7 7.4424 3.4124 1.6001 13 6 6.8625 4.5650 2.2940 14 6 8.3654 2.5205 2.3064 15 1 8.6906 1.7272 1.6333 16 6 7.6563 1.9060 3.5150 17 6 9.5642 3.3055 2.7730 18 1 9.6319 4.3629 2.5639 19 6 10.5749 2.6736 3.4659 20 7 10.4926 1.3859 3.7200 21 14 12.0605 3.6468 4.0449 22 1 11.6176 4.7273 4.9622 23 1 12.9962 2.7427 4.7608 24 1 12.7485 4.2442 2.8723 25 6 4.3607 2.4942 0.0070 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.1540 -0.8125 0.0254 30 1 5.9264 4.2703 2.7684 31 1 7.5589 4.9197 3.0538 32 1 6.6706 5.3624 1.5762 33 1 8.3429 1.2421 4.0402 34 1 7.3314 2.6996 4.1878 35 1 6.7892 1.3383 3.1774 36 1 11.2035 0.9414 4.2078 37 1 4.0132 3.5167 0.0025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152713330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:49 Heat of formation + Delta-G solvation = -153.151562 kcal Electronic energy + Delta-G solvation = -24912.590885 eV Core-core repulsion = 20976.974682 eV Total energy + Delta-G solvation = -3935.616202 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.90401 -41.30778 -38.52173 -37.97335 -37.59212 -37.08556 -34.54101 -34.40680 -31.76031 -30.95409 -28.72439 -27.23835 -27.06461 -25.21081 -23.64640 -22.62391 -22.07657 -20.56193 -19.49533 -18.71671 -18.36686 -18.27529 -17.72151 -17.39783 -17.20847 -17.06425 -16.98735 -16.37382 -15.28868 -15.04873 -14.79540 -14.49640 -14.45956 -14.38401 -14.14202 -13.84362 -13.53207 -13.35977 -13.20025 -13.03229 -13.00561 -12.75794 -12.69013 -12.64796 -12.24773 -12.11286 -11.93939 -11.92452 -11.89431 -11.39145 -11.18856 -10.55250 -10.47147 -9.76101 -8.09588 -6.23203 -0.89611 -0.15315 0.08590 1.33333 1.47673 1.49527 1.56190 1.72634 1.75770 2.04904 2.46483 2.57624 3.19608 3.21719 3.35968 3.48837 3.95092 3.99472 4.09467 4.28986 4.32521 4.49291 4.68399 4.74162 4.75704 4.75978 4.98637 5.01293 5.13430 5.14028 5.24491 5.39943 5.61954 5.65564 5.85070 6.10553 6.28507 6.52144 6.83592 7.45445 8.94979 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.003634 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.698760 B = 7703.890375 C = 8058.946359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.548 3.452 4 O -0.533 6.533 5 C -0.274 4.274 6 C 0.125 3.875 7 O -0.128 6.128 8 C -0.581 4.581 9 S 2.719 3.281 10 O -0.973 6.973 11 O -0.956 6.956 12 N -0.976 5.976 13 C 0.082 3.918 14 C 0.269 3.731 15 H 0.032 0.968 16 C -0.137 4.137 17 C -0.539 4.539 18 H 0.064 0.936 19 C 0.019 3.981 20 N -0.913 5.913 21 Si 0.957 3.043 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.278 1.278 25 C -0.035 4.035 26 H 0.064 0.936 27 H 0.140 0.860 28 H 0.063 0.937 29 H 0.280 0.720 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.714 -3.971 -4.424 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.268 6.268 3 C 0.394 3.606 4 O -0.425 6.425 5 C -0.277 4.277 6 C 0.051 3.949 7 O -0.020 6.020 8 C -0.709 4.709 9 S 2.804 3.196 10 O -0.963 6.963 11 O -0.946 6.946 12 N -0.818 5.818 13 C -0.063 4.063 14 C 0.165 3.835 15 H 0.050 0.950 16 C -0.197 4.197 17 C -0.579 4.579 18 H 0.083 0.917 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.783 3.217 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.203 1.203 25 C -0.056 4.056 26 H 0.083 0.917 27 H 0.158 0.842 28 H 0.082 0.918 29 H 0.296 0.704 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.186 -3.695 -5.067 18.294 hybrid contribution -0.068 0.178 0.596 0.625 sum -17.253 -3.517 -4.471 18.167 Atomic orbital electron populations 1.23663 0.73544 1.06262 1.02830 1.86516 1.25744 1.30594 1.83944 1.19787 0.86946 0.81952 0.71888 1.90852 1.66930 1.37055 1.47633 1.20745 0.91446 0.94166 1.21332 1.26271 0.79598 1.01635 0.87429 1.84040 1.30850 1.18307 1.68755 1.35849 1.19388 0.91728 1.23900 1.01415 0.72196 0.72687 0.73332 1.93550 1.52435 1.72581 1.77753 1.93565 1.83881 1.39843 1.77306 1.57329 1.56539 1.37125 1.30760 1.21684 0.98920 0.86761 0.98905 1.18571 0.86109 0.88118 0.90685 0.94987 1.21944 0.98295 1.00216 0.99222 1.21600 1.04077 0.96194 1.35997 0.91734 1.25630 1.00665 0.95866 0.95926 1.69966 1.34324 1.09939 1.40990 0.85629 0.79110 0.78626 0.78377 1.19082 1.20936 1.20309 1.23090 0.89442 1.00920 0.92121 0.91676 0.84216 0.91773 0.70434 0.91450 0.89770 0.89838 0.91123 0.93651 0.95208 0.92563 0.79451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.35 -6.22 10.42 -56.86 -0.59 -6.81 16 3 C 0.55 13.17 7.95 70.19 0.56 13.73 16 4 O -0.53 -15.76 16.77 19.74 0.33 -15.43 16 5 C -0.27 -6.76 6.31 -19.00 -0.12 -6.88 16 6 C 0.13 2.58 11.94 67.41 0.80 3.39 16 7 O -0.13 -3.79 10.52 4.60 0.05 -3.75 16 8 C -0.58 -18.73 7.32 66.89 0.49 -18.24 16 9 S 2.72 104.47 5.84 -56.49 -0.33 104.14 16 10 O -0.97 -45.14 16.58 -127.90 -2.12 -47.26 16 11 O -0.96 -36.45 16.42 -128.00 -2.10 -38.55 16 12 N -0.98 -38.93 3.06 -520.43 -1.59 -40.52 16 13 C 0.08 2.66 9.65 127.77 1.23 3.89 16 14 C 0.27 12.91 2.62 44.25 0.12 13.02 16 15 H 0.03 1.74 6.91 -2.39 -0.02 1.73 16 16 C -0.14 -6.07 8.97 71.98 0.65 -5.42 16 17 C -0.54 -28.19 7.99 25.60 0.20 -27.99 16 18 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 19 C 0.02 1.02 5.30 84.65 0.45 1.47 16 20 N -0.91 -50.19 11.32 21.45 0.24 -49.95 16 21 Si 0.96 42.11 29.54 68.60 2.03 44.13 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 C -0.03 -0.99 10.70 23.65 0.25 -0.74 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.28 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.08 2.85 7.02 -2.39 -0.02 2.84 16 32 H 0.08 2.42 7.02 -2.39 -0.02 2.41 16 33 H 0.07 3.50 6.07 -2.39 -0.01 3.48 16 34 H 0.04 1.86 7.67 -2.39 -0.02 1.84 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.19 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -71.72 338.27 2.84 -68.88 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.10 Total: 7.34 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 5.83 Total: -22.21 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -1.35 Total: -90.48 kcal Atomic # 8 Polarization: -107.36 SS G_CDS: -4.43 Total: -111.80 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 104.47 SS G_CDS: -0.33 Total: 104.14 kcal Total: -71.72 2.84 -68.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152713330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.276 kcal (2) G-P(sol) polarization free energy of solvation -71.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds