Wall clock time and date at job start Fri Apr 10 2020 14:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34903 * 117.00229 * 270.00688 * 12 2 1 14 14 O 1.21621 * 119.99975 * 359.97438 * 13 12 2 15 15 C 1.46471 * 119.99966 * 180.02562 * 13 12 2 16 16 C 1.36639 * 125.99599 * 179.97438 * 15 13 12 17 17 C 1.40303 * 106.70336 * 179.97438 * 16 15 13 18 18 C 1.35162 * 107.12698 * 0.02562 * 17 16 15 19 19 S 1.76202 * 125.61143 * 180.02562 * 18 17 16 20 20 O 1.42099 * 106.40507 * 203.54026 * 19 18 17 21 21 O 1.42106 * 106.39714 * 336.45919 * 19 18 17 22 22 N 1.65597 * 107.22108 * 89.99658 * 19 18 17 23 23 C 1.46507 * 119.99852 * 90.00054 * 22 19 18 24 24 C 1.46504 * 120.00325 * 270.00495 * 22 19 18 25 25 O 1.33910 * 108.78397 * 359.76916 * 18 17 16 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08006 * 126.64489 * 359.97438 * 16 15 13 31 31 H 1.07996 * 126.43586 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46671 * 90.00537 * 23 22 19 33 33 H 1.09001 * 109.46816 * 210.00496 * 23 22 19 34 34 H 1.08993 * 109.46538 * 330.00238 * 23 22 19 35 35 H 1.09005 * 109.46947 * 89.99247 * 24 22 19 36 36 H 1.08998 * 109.47295 * 209.99718 * 24 22 19 37 37 H 1.09001 * 109.46609 * 329.99898 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2180 0.0679 2.2866 14 8 1.9976 1.2636 2.2557 15 6 2.7062 -0.5551 3.5191 16 6 2.9546 0.0867 4.6995 17 6 3.4034 -0.8890 5.6024 18 6 3.4100 -2.0687 4.9427 19 16 3.8917 -3.6214 5.6222 20 8 4.2777 -4.4374 4.5247 21 8 4.7520 -3.3314 6.7154 22 7 2.5342 -4.3167 6.2672 23 6 1.6929 -5.1856 5.4404 24 6 2.1744 -4.0629 7.6645 25 8 2.9849 -1.8643 3.6894 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.8297 1.1408 4.8989 31 1 3.6897 -0.7277 6.6311 32 1 2.0395 -6.2154 5.5263 33 1 0.6592 -5.1205 5.7801 34 1 1.7540 -4.8671 4.3998 35 1 1.5300 -3.1855 7.7201 36 1 1.6465 -4.9275 8.0666 37 1 3.0792 -3.8866 8.2463 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:59 Heat of formation + Delta-G solvation = -129.561545 kcal Electronic energy + Delta-G solvation = -24506.184961 eV Core-core repulsion = 20571.591698 eV Total energy + Delta-G solvation = -3934.593263 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.89914 -39.55595 -37.68383 -36.57989 -36.22684 -36.06499 -33.51567 -33.29865 -30.74860 -29.51654 -28.49751 -25.43682 -25.15081 -24.63131 -22.44755 -21.44068 -20.10662 -19.62691 -18.68335 -17.97242 -17.52426 -16.78313 -16.53953 -16.45063 -15.85755 -15.07853 -14.95926 -14.80880 -14.61984 -14.03524 -13.77991 -13.48507 -13.28276 -13.07373 -12.98574 -12.74985 -12.48861 -12.41178 -12.11181 -12.06928 -11.96014 -11.83534 -11.35427 -11.14706 -10.93208 -10.51018 -10.43929 -10.42129 -10.22197 -9.74787 -9.62980 -9.32137 -9.04298 -8.56320 -6.25199 -4.32629 -0.18962 0.47942 1.73457 2.30831 2.62617 3.10499 3.22333 3.25331 3.28285 3.31097 3.44411 4.11084 4.28672 4.35114 4.47762 4.94155 4.97511 4.98958 5.06690 5.08712 5.23732 5.30494 5.35074 5.48905 5.51695 5.52450 5.87635 6.03010 6.41415 6.46593 6.73647 6.76840 6.89517 7.42244 7.59277 7.75736 8.00930 8.30870 8.75510 9.32929 10.82312 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.003332 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.401608 B = 8401.476578 C = 9016.488322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H 0.051 0.949 4 C -0.525 4.525 5 H 0.072 0.928 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.915 3.085 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.273 1.273 12 O -0.337 6.337 13 C 0.533 3.467 14 O -0.484 6.484 15 C 0.019 3.981 16 C -0.152 4.152 17 C -0.096 4.096 18 C -0.566 4.566 19 S 2.722 3.278 20 O -0.928 6.928 21 O -0.932 6.932 22 N -0.998 5.998 23 C 0.087 3.913 24 C 0.079 3.921 25 O -0.088 6.088 26 H 0.040 0.960 27 H 0.017 0.983 28 H 0.103 0.897 29 H 0.268 0.732 30 H 0.175 0.825 31 H 0.175 0.825 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 -8.618 20.894 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.563 4.563 5 H 0.090 0.910 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.742 3.258 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.198 1.198 12 O -0.253 6.253 13 C 0.375 3.625 14 O -0.374 6.374 15 C -0.037 4.037 16 C -0.171 4.171 17 C -0.117 4.117 18 C -0.697 4.697 19 S 2.803 3.197 20 O -0.918 6.918 21 O -0.923 6.923 22 N -0.839 5.839 23 C -0.058 4.058 24 C -0.066 4.066 25 O 0.020 5.980 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.193 0.807 31 H 0.192 0.808 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.169 -8.695 20.394 22.202 hybrid contribution -0.350 0.608 -0.828 1.085 sum 0.819 -8.088 19.566 21.188 Atomic orbital electron populations 1.22199 0.97066 1.00481 1.01673 1.20870 0.91731 0.94063 0.77086 0.93087 1.20981 1.32909 1.13792 0.88591 0.91031 1.24886 0.94778 0.95068 0.99094 1.69879 1.35840 1.22484 1.24501 0.86269 0.79320 0.79550 0.80660 1.20972 1.19855 1.19796 1.86712 1.74947 1.42816 1.20790 1.19182 0.75576 0.84782 0.82997 1.90914 1.48332 1.14547 1.83632 1.22142 1.03401 0.82388 0.95740 1.22149 1.02249 1.01948 0.90804 1.21875 0.97809 0.90565 1.01477 1.36289 1.19595 1.22942 0.90888 1.01824 0.72667 0.71880 0.73317 1.93640 1.79659 1.64752 1.53732 1.93634 1.61022 1.85132 1.52478 1.57341 1.46279 1.60395 1.19861 1.21653 0.95196 0.93960 0.94946 1.21721 1.02474 1.02501 0.79953 1.84344 1.61340 1.25745 1.26602 0.94108 0.96394 0.87825 0.92194 0.80749 0.80759 0.91554 0.90447 0.90102 0.92306 0.89953 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.33 37.16 0.35 -3.55 16 2 C 0.21 5.73 2.57 -27.89 -0.07 5.66 16 3 H 0.05 1.47 7.16 -51.92 -0.37 1.10 16 4 C -0.52 -14.76 8.90 -34.44 -0.31 -15.06 16 5 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.92 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 O -0.34 -8.25 9.88 -42.49 -0.42 -8.67 16 13 C 0.53 11.50 7.90 34.05 0.27 11.77 16 14 O -0.48 -11.09 16.13 -19.36 -0.31 -11.41 16 15 C 0.02 0.34 7.18 -36.85 -0.26 0.07 16 16 C -0.15 -2.11 10.62 -39.38 -0.42 -2.53 16 17 C -0.10 -1.13 10.58 -39.90 -0.42 -1.55 16 18 C -0.57 -7.62 7.35 29.64 0.22 -7.40 16 19 S 2.72 31.46 5.80 -107.50 -0.62 30.84 16 20 O -0.93 -13.88 17.09 -57.25 -0.98 -14.86 16 21 O -0.93 -11.32 16.43 -57.17 -0.94 -12.26 16 22 N -1.00 -8.31 3.58 -129.20 -0.46 -8.77 16 23 C 0.09 0.64 10.29 59.85 0.62 1.26 16 24 C 0.08 0.43 10.66 59.85 0.64 1.07 16 25 O -0.09 -1.51 10.67 4.70 0.05 -1.46 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.18 2.04 8.06 -52.48 -0.42 1.62 16 31 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.08 0.69 7.79 -51.93 -0.40 0.29 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 37 H 0.09 0.46 7.02 -51.93 -0.36 0.09 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -34.13 341.44 -6.80 -40.93 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.38 Total: -2.63 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 0.51 Total: -8.60 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.16 Total: -33.06 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -2.60 Total: -48.67 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 31.46 SS G_CDS: -0.62 Total: 30.84 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.13 -6.80 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.627 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds