Wall clock time and date at job start Fri Apr 10 2020 14:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34903 * 117.00229 * 270.00688 * 12 2 1 14 14 O 1.21621 * 119.99975 * 359.97438 * 13 12 2 15 15 C 1.46471 * 119.99966 * 180.02562 * 13 12 2 16 16 C 1.36639 * 125.99599 * 179.97438 * 15 13 12 17 17 C 1.40303 * 106.70336 * 179.97438 * 16 15 13 18 18 C 1.35162 * 107.12698 * 0.02562 * 17 16 15 19 19 S 1.76202 * 125.61143 * 180.02562 * 18 17 16 20 20 O 1.42099 * 106.40507 * 203.54026 * 19 18 17 21 21 O 1.42106 * 106.39714 * 336.45919 * 19 18 17 22 22 N 1.65597 * 107.22108 * 89.99658 * 19 18 17 23 23 C 1.46507 * 119.99852 * 90.00054 * 22 19 18 24 24 C 1.46504 * 120.00325 * 270.00495 * 22 19 18 25 25 O 1.33910 * 108.78397 * 359.76916 * 18 17 16 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08006 * 126.64489 * 359.97438 * 16 15 13 31 31 H 1.07996 * 126.43586 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46671 * 90.00537 * 23 22 19 33 33 H 1.09001 * 109.46816 * 210.00496 * 23 22 19 34 34 H 1.08993 * 109.46538 * 330.00238 * 23 22 19 35 35 H 1.09005 * 109.46947 * 89.99247 * 24 22 19 36 36 H 1.08998 * 109.47295 * 209.99718 * 24 22 19 37 37 H 1.09001 * 109.46609 * 329.99898 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2180 0.0679 2.2866 14 8 1.9976 1.2636 2.2557 15 6 2.7062 -0.5551 3.5191 16 6 2.9546 0.0867 4.6995 17 6 3.4034 -0.8890 5.6024 18 6 3.4100 -2.0687 4.9427 19 16 3.8917 -3.6214 5.6222 20 8 4.2777 -4.4374 4.5247 21 8 4.7520 -3.3314 6.7154 22 7 2.5342 -4.3167 6.2672 23 6 1.6929 -5.1856 5.4404 24 6 2.1744 -4.0629 7.6645 25 8 2.9849 -1.8643 3.6894 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.8297 1.1408 4.8989 31 1 3.6897 -0.7277 6.6311 32 1 2.0395 -6.2154 5.5263 33 1 0.6592 -5.1205 5.7801 34 1 1.7540 -4.8671 4.3998 35 1 1.5300 -3.1855 7.7201 36 1 1.6465 -4.9275 8.0666 37 1 3.0792 -3.8866 8.2463 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:58 Heat of formation + Delta-G solvation = -154.228417 kcal Electronic energy + Delta-G solvation = -24507.254597 eV Core-core repulsion = 20571.591698 eV Total energy + Delta-G solvation = -3935.662898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.08908 -41.33292 -38.67078 -37.91412 -37.30818 -37.11814 -35.45206 -34.57579 -32.26753 -31.29459 -28.99470 -27.53177 -26.22766 -25.63676 -23.65511 -23.08067 -21.74314 -20.63077 -19.84116 -19.12351 -18.77423 -18.63064 -17.86703 -17.71757 -17.26678 -16.65481 -16.56710 -15.76363 -15.51999 -15.22160 -14.97598 -14.66916 -14.41176 -14.34383 -14.20330 -14.07246 -13.67488 -13.49277 -13.34057 -13.32085 -13.10885 -12.96742 -12.86581 -12.69952 -12.59616 -12.46516 -12.24420 -12.04223 -11.75973 -11.51108 -11.12335 -10.66862 -10.57186 -10.17818 -8.34564 -6.51955 -1.11585 -0.77131 0.60596 1.06617 1.40542 1.43912 1.51872 1.56473 1.67200 1.96892 2.34917 2.38952 2.96347 3.16484 3.45312 3.60831 3.77509 3.97016 4.06811 4.39190 4.44010 4.49547 4.56620 4.69890 4.71620 4.78436 4.85841 4.95659 4.96028 4.97857 5.04678 5.25573 5.36803 5.45048 5.50905 5.72354 5.91982 6.42138 6.64619 7.18751 8.73086 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.003332 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.401608 B = 8401.476578 C = 9016.488322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.215 3.785 3 H 0.019 0.981 4 C -0.557 4.557 5 H 0.064 0.936 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.983 3.017 9 H -0.272 1.272 10 H -0.270 1.270 11 H -0.264 1.264 12 O -0.353 6.353 13 C 0.532 3.468 14 O -0.508 6.508 15 C -0.031 4.031 16 C -0.120 4.120 17 C -0.083 4.083 18 C -0.563 4.563 19 S 2.735 3.265 20 O -0.967 6.967 21 O -0.935 6.935 22 N -0.988 5.988 23 C 0.077 3.923 24 C 0.067 3.933 25 O -0.115 6.115 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.088 0.912 29 H 0.274 0.726 30 H 0.198 0.802 31 H 0.222 0.778 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 -9.549 22.947 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.163 3.837 3 H 0.037 0.963 4 C -0.594 4.594 5 H 0.082 0.918 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.806 3.194 9 H -0.197 1.197 10 H -0.195 1.195 11 H -0.189 1.189 12 O -0.269 6.269 13 C 0.376 3.624 14 O -0.399 6.399 15 C -0.085 4.085 16 C -0.140 4.140 17 C -0.103 4.103 18 C -0.692 4.692 19 S 2.815 3.185 20 O -0.957 6.957 21 O -0.925 6.925 22 N -0.831 5.831 23 C -0.067 4.067 24 C -0.077 4.077 25 O -0.009 6.009 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.215 0.785 31 H 0.239 0.761 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.161 -9.596 22.468 24.459 hybrid contribution -0.340 0.847 -1.247 1.545 sum 0.821 -8.750 21.222 22.969 Atomic orbital electron populations 1.22019 0.95957 1.00738 1.01415 1.20615 0.92610 0.92413 0.78071 0.96310 1.21236 1.34025 1.14216 0.89929 0.91753 1.25787 0.94517 0.95620 1.01918 1.69980 1.36110 1.23352 1.25573 0.85231 0.78760 0.78682 0.76747 1.19704 1.19501 1.18884 1.86683 1.75693 1.43247 1.21299 1.19660 0.74764 0.84701 0.83243 1.90875 1.49558 1.15321 1.84177 1.21688 1.08048 0.83498 0.95300 1.22581 0.98893 1.03231 0.89275 1.22418 0.96217 0.88732 1.02982 1.36952 1.17844 1.24633 0.89739 1.01438 0.73323 0.71269 0.72492 1.93593 1.80999 1.65547 1.55525 1.93620 1.61944 1.85020 1.51960 1.57173 1.45636 1.59356 1.20955 1.21866 0.96579 0.94245 0.94046 1.22072 1.03272 1.04443 0.77931 1.84302 1.62537 1.25515 1.28555 0.93464 0.95182 0.89395 0.91678 0.78452 0.76119 0.90316 0.87791 0.91964 0.90781 0.87467 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.37 9.33 71.98 0.67 -6.70 16 2 C 0.22 12.05 2.57 29.85 0.08 12.12 16 3 H 0.02 1.16 7.16 -2.38 -0.02 1.15 16 4 C -0.56 -32.33 8.90 25.60 0.23 -32.11 16 5 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -51.98 11.32 21.45 0.24 -51.74 16 8 Si 0.98 43.28 29.54 68.60 2.03 45.31 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 12 O -0.35 -18.16 9.88 -56.79 -0.56 -18.72 16 13 C 0.53 23.91 7.90 69.97 0.55 24.46 16 14 O -0.51 -24.17 16.13 19.44 0.31 -23.85 16 15 C -0.03 -1.12 7.18 24.04 0.17 -0.95 16 16 C -0.12 -3.11 10.62 22.40 0.24 -2.87 16 17 C -0.08 -1.69 10.58 22.06 0.23 -1.46 16 18 C -0.56 -14.35 7.35 67.11 0.49 -13.86 16 19 S 2.74 59.39 5.80 -56.49 -0.33 59.06 16 20 O -0.97 -29.00 17.09 -127.92 -2.19 -31.18 16 21 O -0.94 -20.51 16.43 -128.00 -2.10 -22.62 16 22 N -0.99 -14.15 3.58 -562.66 -2.02 -16.17 16 23 C 0.08 1.00 10.29 127.77 1.31 2.31 16 24 C 0.07 0.49 10.66 127.77 1.36 1.85 16 25 O -0.12 -4.01 10.67 -4.79 -0.05 -4.06 16 26 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 4.78 6.07 -2.39 -0.01 4.77 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.20 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.22 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.79 8.07 -2.39 -0.02 0.77 16 34 H 0.06 1.06 7.79 -2.39 -0.02 1.04 16 35 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 36 H 0.11 0.31 8.07 -2.39 -0.02 0.29 16 37 H 0.09 0.64 7.02 -2.39 -0.02 0.62 16 Total: -1.00 -76.66 341.44 2.23 -74.44 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 1.10 Total: 5.06 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 5.79 Total: -15.53 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -1.77 Total: -67.91 kcal Atomic # 8 Polarization: -95.84 SS G_CDS: -4.59 Total: -100.43 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 59.39 SS G_CDS: -0.33 Total: 59.06 kcal Total: -76.66 2.23 -74.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.792 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds