Wall clock time and date at job start Fri Apr 10 2020 14:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.49933 * 2 1 4 4 C 1.53195 * 109.49678 * 120.09517 * 2 1 3 5 5 N 1.46927 * 108.77312 * 174.58318 * 4 2 1 6 6 S 1.65608 * 120.62640 * 126.37050 * 5 4 2 7 7 O 1.42099 * 106.40074 * 203.54000 * 6 5 4 8 8 O 1.42098 * 106.40411 * 336.45824 * 6 5 4 9 9 C 1.76196 * 107.21842 * 89.99989 * 6 5 4 10 10 H 1.08005 * 120.00266 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00229 * 179.97438 * 9 6 5 12 12 N 1.31518 * 119.99968 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 120.00422 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.46603 * 60.00364 * 13 11 9 15 15 H 1.48494 * 109.47297 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46891 * 300.00650 * 13 11 9 17 17 C 1.46924 * 118.74264 * 306.39217 * 5 4 2 18 18 C 1.53185 * 108.77318 * 53.60902 * 17 5 4 19 19 C 1.53041 * 109.31407 * 305.36212 * 18 17 5 20 20 O 1.42893 * 109.46048 * 301.34879 * 19 18 17 21 21 C 1.53003 * 109.45133 * 181.37765 * 19 18 17 22 22 F 1.39900 * 109.47262 * 173.87593 * 21 19 18 23 23 F 1.39896 * 109.47258 * 293.88132 * 21 19 18 24 24 F 1.39903 * 109.46804 * 53.88026 * 21 19 18 25 25 H 1.09002 * 109.47395 * 171.67065 * 1 2 3 26 26 H 1.09003 * 109.46866 * 291.66830 * 1 2 3 27 27 H 1.08996 * 109.47215 * 51.66968 * 1 2 3 28 28 H 1.08996 * 109.59066 * 294.37293 * 4 2 1 29 29 H 1.09000 * 109.58959 * 54.80192 * 4 2 1 30 30 H 0.97001 * 120.00042 * 179.97438 * 12 11 9 31 31 H 1.09004 * 109.58819 * 173.39591 * 17 5 4 32 32 H 1.08993 * 109.58339 * 293.82254 * 17 5 4 33 33 H 1.09003 * 109.50095 * 185.41421 * 18 17 5 34 34 H 1.09000 * 109.50226 * 65.31611 * 18 17 5 35 35 H 0.96699 * 114.00049 * 300.06229 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7241 1.2494 5 7 3.5046 -0.8295 1.1693 6 16 4.4588 -0.2848 2.4085 7 8 5.7327 -0.0090 1.8425 8 8 3.6925 0.6860 3.1081 9 6 4.6894 -1.6322 3.5202 10 1 4.2342 -2.5890 3.3109 11 6 5.4519 -1.4654 4.6567 12 7 6.0066 -0.3005 4.9114 13 14 5.6970 -2.8941 5.8350 14 1 6.3576 -4.0164 5.1214 15 1 6.5494 -2.4587 6.9704 16 1 4.3784 -3.3427 6.3501 17 6 4.1053 -1.4268 -0.0311 18 6 3.5709 -0.6948 -1.2661 19 6 2.0408 -0.7229 -1.2485 20 8 1.5897 -2.0786 -1.2317 21 6 1.5039 -0.0224 -2.4984 22 9 0.1137 -0.1690 -2.5543 23 9 1.8278 1.3375 -2.4462 24 9 2.0794 -0.5955 -3.6375 25 1 -0.3634 -1.0168 -0.1489 26 1 -0.3633 0.3795 0.9551 27 1 -0.3633 0.6373 -0.8061 28 1 1.7638 -0.1585 2.1389 29 1 1.6053 -1.7220 1.2976 30 1 6.5427 -0.1831 5.7112 31 1 5.1896 -1.3247 0.0134 32 1 3.8375 -2.4818 -0.0873 33 1 3.9334 -1.1892 -2.1674 34 1 3.9159 0.3391 -1.2540 35 1 1.8768 -2.5981 -1.9951 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:35 Heat of formation + Delta-G solvation = -293.270484 kcal Electronic energy + Delta-G solvation = -26950.002483 eV Core-core repulsion = 22466.453528 eV Total energy + Delta-G solvation = -4483.548955 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.28836 -47.79747 -47.70470 -39.55065 -35.64853 -35.36992 -34.00743 -33.17351 -32.97489 -31.37292 -27.48874 -26.17958 -25.87342 -22.96853 -22.38456 -20.24774 -18.84060 -18.60203 -18.51218 -18.41836 -17.42968 -16.34478 -15.86401 -15.27836 -15.08233 -14.86794 -14.66570 -14.47522 -14.34404 -14.10237 -14.05316 -13.84344 -13.73435 -13.69618 -13.39405 -13.20931 -12.51847 -12.06962 -12.05749 -11.80882 -11.61291 -11.49822 -11.21340 -11.16888 -10.91274 -10.69560 -10.63404 -10.41712 -10.33694 -10.06703 -10.04654 -9.25730 -8.97097 -8.29568 -6.71763 -5.34376 2.18958 2.53901 3.07470 3.11946 3.17450 3.54326 3.56534 3.81324 4.03303 4.18480 4.40441 4.57145 4.60327 4.63058 5.02572 5.30642 5.33355 5.40508 5.53077 5.59968 5.78788 5.83803 5.92150 6.01132 6.08625 6.15462 6.22287 6.34551 6.46131 6.72897 7.15757 7.30511 7.49094 7.95342 8.87006 10.21818 Molecular weight = 317.07amu Principal moments of inertia in cm(-1) A = 0.028630 B = 0.004371 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.771064 B = 6404.317480 C = 6448.598105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.094 4.094 3 H 0.097 0.903 4 C 0.138 3.862 5 N -1.013 6.013 6 S 2.714 3.286 7 O -1.003 7.003 8 O -1.002 7.002 9 C -1.020 5.020 10 H 0.102 0.898 11 C 0.133 3.867 12 N -0.846 5.846 13 Si 0.921 3.079 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.264 1.264 17 C 0.135 3.865 18 C -0.164 4.164 19 C 0.111 3.889 20 O -0.519 6.519 21 C 0.422 3.578 22 F -0.174 7.174 23 F -0.177 7.177 24 F -0.187 7.187 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.292 0.708 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 -3.055 -13.191 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.114 4.114 3 H 0.115 0.885 4 C 0.012 3.988 5 N -0.847 5.847 6 S 2.815 3.185 7 O -0.993 6.993 8 O -0.992 6.992 9 C -1.153 5.153 10 H 0.121 0.879 11 C -0.085 4.085 12 N -0.476 5.476 13 Si 0.745 3.255 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.188 1.188 17 C 0.008 3.992 18 C -0.204 4.204 19 C 0.067 3.933 20 O -0.325 6.325 21 C 0.367 3.633 22 F -0.155 7.155 23 F -0.159 7.159 24 F -0.169 7.169 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -8.578 -1.835 -12.487 15.260 hybrid contribution 0.205 -1.341 -0.146 1.364 sum -8.373 -3.176 -12.633 15.485 Atomic orbital electron populations 1.22056 0.93259 1.03377 1.02846 1.21635 0.97265 0.99730 0.92817 0.88469 1.21200 0.80321 1.00693 0.96597 1.58250 1.15305 1.78445 1.32699 1.00559 0.71362 0.74951 0.71616 1.93348 1.40978 1.85911 1.79096 1.93351 1.72080 1.61352 1.72437 1.30579 1.44489 1.17488 1.22782 0.87947 1.24758 0.90512 0.96794 0.96477 1.69887 1.27356 1.23251 1.27094 0.86194 0.79120 0.81164 0.79041 1.18866 1.20125 1.18842 1.21083 0.98968 0.96471 0.82670 1.22681 0.92049 1.04531 1.01115 1.22382 0.95545 0.84114 0.91215 1.86697 1.77388 1.19414 1.48963 1.21785 0.76372 0.78279 0.86818 1.93161 1.30358 1.95393 1.96598 1.93184 1.92417 1.33738 1.96545 1.93154 1.84520 1.84471 1.54723 0.91037 0.91482 0.91870 0.88167 0.90938 0.89808 0.88069 0.91306 0.89524 0.89200 0.77026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 7.98 37.16 0.30 -1.60 16 2 C -0.09 -1.32 2.04 -90.50 -0.18 -1.51 16 3 H 0.10 1.42 7.71 -51.93 -0.40 1.02 16 4 C 0.14 2.30 5.51 -3.71 -0.02 2.28 16 5 N -1.01 -19.50 3.29 -113.53 -0.37 -19.87 16 6 S 2.71 69.78 5.01 -107.50 -0.54 69.24 16 7 O -1.00 -28.17 16.61 -57.17 -0.95 -29.12 16 8 O -1.00 -28.27 16.61 -57.17 -0.95 -29.22 16 9 C -1.02 -27.49 9.75 30.60 0.30 -27.19 16 10 H 0.10 2.53 7.81 -52.48 -0.41 2.12 16 11 C 0.13 3.64 5.46 -17.82 -0.10 3.55 16 12 N -0.85 -24.56 13.19 55.43 0.73 -23.83 16 13 Si 0.92 20.30 29.54 -169.99 -5.02 15.27 16 14 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 17 C 0.13 2.12 6.24 -3.72 -0.02 2.09 16 18 C -0.16 -2.10 4.83 -26.61 -0.13 -2.23 16 19 C 0.11 1.37 0.29 -90.57 -0.03 1.34 16 20 O -0.52 -5.65 10.80 -35.23 -0.38 -6.03 16 21 C 0.42 5.02 2.25 37.16 0.08 5.10 16 22 F -0.17 -2.09 14.04 2.25 0.03 -2.06 16 23 F -0.18 -2.30 16.34 2.25 0.04 -2.26 16 24 F -0.19 -2.08 16.35 2.25 0.04 -2.04 16 25 H 0.07 0.84 7.49 -51.93 -0.39 0.46 16 26 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 27 H 0.06 0.73 6.11 -51.93 -0.32 0.41 16 28 H 0.10 1.79 6.92 -51.93 -0.36 1.43 16 29 H 0.07 1.11 7.81 -51.93 -0.41 0.71 16 30 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.10 1.71 6.92 -51.93 -0.36 1.35 16 32 H 0.07 0.94 7.81 -51.93 -0.41 0.54 16 33 H 0.09 0.86 7.62 -51.93 -0.40 0.46 16 34 H 0.09 1.22 8.00 -51.93 -0.42 0.81 16 35 H 0.38 2.70 8.87 45.56 0.40 3.11 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -33.73 306.94 -5.56 -39.30 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.01 Total: 4.16 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 0.20 Total: -18.17 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.36 Total: -43.70 kcal Atomic # 8 Polarization: -62.08 SS G_CDS: -2.28 Total: -64.36 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.11 Total: -6.36 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 69.78 SS G_CDS: -0.54 Total: 69.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.73 -5.56 -39.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -253.974 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -293.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds