Wall clock time and date at job start Fri Apr 10 2020 14:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.49933 * 2 1 4 4 C 1.53195 * 109.49678 * 120.09517 * 2 1 3 5 5 N 1.46927 * 108.77312 * 174.58318 * 4 2 1 6 6 S 1.65608 * 120.62640 * 126.37050 * 5 4 2 7 7 O 1.42099 * 106.40074 * 203.54000 * 6 5 4 8 8 O 1.42098 * 106.40411 * 336.45824 * 6 5 4 9 9 C 1.76196 * 107.21842 * 89.99989 * 6 5 4 10 10 H 1.08005 * 120.00266 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00229 * 179.97438 * 9 6 5 12 12 N 1.31518 * 119.99968 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 120.00422 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.46603 * 60.00364 * 13 11 9 15 15 H 1.48494 * 109.47297 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46891 * 300.00650 * 13 11 9 17 17 C 1.46924 * 118.74264 * 306.39217 * 5 4 2 18 18 C 1.53185 * 108.77318 * 53.60902 * 17 5 4 19 19 C 1.53041 * 109.31407 * 305.36212 * 18 17 5 20 20 O 1.42893 * 109.46048 * 301.34879 * 19 18 17 21 21 C 1.53003 * 109.45133 * 181.37765 * 19 18 17 22 22 F 1.39900 * 109.47262 * 173.87593 * 21 19 18 23 23 F 1.39896 * 109.47258 * 293.88132 * 21 19 18 24 24 F 1.39903 * 109.46804 * 53.88026 * 21 19 18 25 25 H 1.09002 * 109.47395 * 171.67065 * 1 2 3 26 26 H 1.09003 * 109.46866 * 291.66830 * 1 2 3 27 27 H 1.08996 * 109.47215 * 51.66968 * 1 2 3 28 28 H 1.08996 * 109.59066 * 294.37293 * 4 2 1 29 29 H 1.09000 * 109.58959 * 54.80192 * 4 2 1 30 30 H 0.97001 * 120.00042 * 179.97438 * 12 11 9 31 31 H 1.09004 * 109.58819 * 173.39591 * 17 5 4 32 32 H 1.08993 * 109.58339 * 293.82254 * 17 5 4 33 33 H 1.09003 * 109.50095 * 185.41421 * 18 17 5 34 34 H 1.09000 * 109.50226 * 65.31611 * 18 17 5 35 35 H 0.96699 * 114.00049 * 300.06229 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7241 1.2494 5 7 3.5046 -0.8295 1.1693 6 16 4.4588 -0.2848 2.4085 7 8 5.7327 -0.0090 1.8425 8 8 3.6925 0.6860 3.1081 9 6 4.6894 -1.6322 3.5202 10 1 4.2342 -2.5890 3.3109 11 6 5.4519 -1.4654 4.6567 12 7 6.0066 -0.3005 4.9114 13 14 5.6970 -2.8941 5.8350 14 1 6.3576 -4.0164 5.1214 15 1 6.5494 -2.4587 6.9704 16 1 4.3784 -3.3427 6.3501 17 6 4.1053 -1.4268 -0.0311 18 6 3.5709 -0.6948 -1.2661 19 6 2.0408 -0.7229 -1.2485 20 8 1.5897 -2.0786 -1.2317 21 6 1.5039 -0.0224 -2.4984 22 9 0.1137 -0.1690 -2.5543 23 9 1.8278 1.3375 -2.4462 24 9 2.0794 -0.5955 -3.6375 25 1 -0.3634 -1.0168 -0.1489 26 1 -0.3633 0.3795 0.9551 27 1 -0.3633 0.6373 -0.8061 28 1 1.7638 -0.1585 2.1389 29 1 1.6053 -1.7220 1.2976 30 1 6.5427 -0.1831 5.7112 31 1 5.1896 -1.3247 0.0134 32 1 3.8375 -2.4818 -0.0873 33 1 3.9334 -1.1892 -2.1674 34 1 3.9159 0.3391 -1.2540 35 1 1.8768 -2.5981 -1.9951 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:35 Heat of formation + Delta-G solvation = -320.660828 kcal Electronic energy + Delta-G solvation = -26951.190217 eV Core-core repulsion = 22466.453528 eV Total energy + Delta-G solvation = -4484.736690 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.074 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.22877 -48.71248 -48.66740 -40.63827 -37.48043 -36.78990 -36.13101 -35.16195 -34.21586 -32.50852 -28.56587 -28.23793 -27.09963 -24.10991 -23.53683 -21.35866 -20.77179 -19.64954 -19.51730 -19.40373 -18.98667 -18.30421 -17.04758 -16.88116 -16.72856 -16.09924 -15.83411 -15.63417 -15.43820 -15.34509 -15.22611 -15.01847 -14.87680 -14.75149 -14.70873 -14.42565 -13.96951 -13.56734 -13.43953 -13.30670 -12.99866 -12.98809 -12.75218 -12.60683 -12.48115 -12.32137 -12.28501 -12.09264 -11.87546 -11.49571 -11.23212 -11.22221 -10.96585 -9.82531 -8.73651 -7.47666 0.28576 1.34898 1.36819 1.49913 1.57281 2.21190 2.58523 2.59261 2.64866 2.80836 2.83520 3.21263 3.52661 3.59022 3.78392 3.87027 4.12144 4.24372 4.29599 4.30904 4.39965 4.58995 4.70305 4.74287 4.86684 4.94359 5.04609 5.09907 5.21287 5.33192 5.39186 5.91383 5.93148 6.50522 6.79187 8.21101 Molecular weight = 317.07amu Principal moments of inertia in cm(-1) A = 0.028630 B = 0.004371 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.771064 B = 6404.317480 C = 6448.598105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.134 3.866 5 N -1.009 6.009 6 S 2.718 3.282 7 O -1.038 7.038 8 O -1.039 7.039 9 C -1.041 5.041 10 H 0.119 0.881 11 C 0.070 3.930 12 N -0.895 5.895 13 Si 0.989 3.011 14 H -0.249 1.249 15 H -0.265 1.265 16 H -0.251 1.251 17 C 0.125 3.875 18 C -0.162 4.162 19 C 0.120 3.880 20 O -0.521 6.521 21 C 0.429 3.571 22 F -0.172 7.172 23 F -0.185 7.185 24 F -0.179 7.179 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.299 0.701 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 -5.233 -14.223 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 H 0.103 0.897 4 C 0.009 3.991 5 N -0.847 5.847 6 S 2.820 3.180 7 O -1.028 7.028 8 O -1.029 7.029 9 C -1.174 5.174 10 H 0.137 0.863 11 C -0.143 4.143 12 N -0.526 5.526 13 Si 0.807 3.193 14 H -0.173 1.173 15 H -0.189 1.189 16 H -0.175 1.175 17 C 0.000 4.000 18 C -0.201 4.201 19 C 0.076 3.924 20 O -0.329 6.329 21 C 0.374 3.626 22 F -0.154 7.154 23 F -0.167 7.167 24 F -0.160 7.160 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.568 -4.013 -13.550 17.066 hybrid contribution 0.462 -0.675 0.074 0.821 sum -9.106 -4.688 -13.477 16.927 Atomic orbital electron populations 1.22024 0.91551 1.03991 1.03373 1.21595 0.98652 0.99049 0.92506 0.89666 1.21373 0.78568 1.01798 0.97372 1.57730 1.16004 1.78575 1.32344 1.00028 0.71008 0.74818 0.72108 1.93290 1.43233 1.86528 1.79747 1.93291 1.72640 1.62948 1.74053 1.30974 1.44574 1.18437 1.23396 0.86279 1.26019 0.89853 0.99847 0.98594 1.69986 1.28608 1.25761 1.28291 0.85175 0.79895 0.77406 0.76796 1.17311 1.18910 1.17465 1.21372 0.98124 0.98212 0.82247 1.22672 0.92571 1.03881 1.00988 1.22076 0.94901 0.84913 0.90517 1.86669 1.77346 1.18546 1.50338 1.21598 0.76395 0.77838 0.86782 1.93166 1.30263 1.95348 1.96594 1.93177 1.92489 1.34428 1.96588 1.93173 1.84382 1.84260 1.54219 0.90330 0.91199 0.91148 0.90136 0.89126 0.89138 0.89736 0.88566 0.85908 0.90449 0.74752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 7.98 71.98 0.57 -2.81 16 2 C -0.10 -2.63 2.04 -10.71 -0.02 -2.65 16 3 H 0.09 2.48 7.71 -2.39 -0.02 2.47 16 4 C 0.13 4.40 5.51 86.36 0.48 4.88 16 5 N -1.01 -38.78 3.29 -513.09 -1.69 -40.46 16 6 S 2.72 143.70 5.01 -56.49 -0.28 143.41 16 7 O -1.04 -60.40 16.61 -128.00 -2.13 -62.52 16 8 O -1.04 -61.04 16.61 -128.00 -2.13 -63.17 16 9 C -1.04 -56.48 9.75 67.73 0.66 -55.82 16 10 H 0.12 5.81 7.81 -2.91 -0.02 5.79 16 11 C 0.07 3.84 5.46 84.65 0.46 4.30 16 12 N -0.89 -53.16 13.19 21.45 0.28 -52.88 16 13 Si 0.99 40.78 29.54 68.60 2.03 42.80 16 14 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 15 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 16 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 17 C 0.13 3.80 6.24 86.36 0.54 4.33 16 18 C -0.16 -3.81 4.83 30.67 0.15 -3.66 16 19 C 0.12 2.66 0.29 -10.76 0.00 2.66 16 20 O -0.52 -9.47 10.80 -148.98 -1.61 -11.08 16 21 C 0.43 9.10 2.25 71.98 0.16 9.27 16 22 F -0.17 -3.67 14.04 44.97 0.63 -3.04 16 23 F -0.19 -4.51 16.34 44.97 0.73 -3.77 16 24 F -0.18 -3.40 16.35 44.97 0.74 -2.66 16 25 H 0.08 1.65 7.49 -2.39 -0.02 1.63 16 26 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 27 H 0.07 1.48 6.11 -2.39 -0.01 1.46 16 28 H 0.08 2.94 6.92 -2.39 -0.02 2.93 16 29 H 0.09 2.63 7.81 -2.39 -0.02 2.61 16 30 H 0.30 15.97 8.31 -92.71 -0.77 15.20 16 31 H 0.08 2.85 6.92 -2.38 -0.02 2.83 16 32 H 0.10 2.38 7.81 -2.39 -0.02 2.36 16 33 H 0.12 2.00 7.62 -2.39 -0.02 1.99 16 34 H 0.08 2.04 8.00 -2.39 -0.02 2.02 16 35 H 0.40 3.95 8.87 -74.06 -0.66 3.29 16 Total: -1.00 -74.40 306.94 0.07 -74.34 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.49 Total: 18.53 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 3.00 Total: -39.51 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -1.40 Total: -93.34 kcal Atomic # 8 Polarization: -130.90 SS G_CDS: -5.86 Total: -136.76 kcal Atomic # 9 Polarization: -11.57 SS G_CDS: 2.10 Total: -9.47 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: 143.70 SS G_CDS: -0.28 Total: 143.41 kcal Total: -74.40 0.07 -74.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -246.325 kcal (2) G-P(sol) polarization free energy of solvation -74.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -320.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -320.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds